Suncus etruscus (white-toothed pygmy shrew): 125998118
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Entry
125998118 CDS
T09902
Symbol
SCN10A
Name
(RefSeq) sodium channel protein type 10 subunit alpha isoform X1
KO
K04842
voltage-gated sodium channel type X alpha
Organism
setr
Suncus etruscus (white-toothed pygmy shrew)
Brite
KEGG Orthology (KO) [BR:
setr00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
setr04040
]
125998118 (SCN10A)
Ion channels [BR:
setr04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
125998118 (SCN10A)
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
PKD_channel
IQ_SCN5A_C
Na_trans_cytopl
GPHH
CcmD_alt
Lustrin_cystein
Motif
Other DBs
NCBI-GeneID:
125998118
NCBI-ProteinID:
XP_049622332
LinkDB
All DBs
Position
20:1977433..2076191
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AA seq
1954 aa
AA seq
DB search
MELPFGSLETTNFRRLTPESLVEIEKQIAAKKAAKKVKKKCKEQVNEKEKPRPQLDLKAC
NQLPKFYGELPAELVGEPLEDLDPFYSTCRTFMVLNKGRTISRFSATRALWLLSPFNLIR
RTAIKVSVHSYPLWFSMFITLTILANCVFMARTDLPEKIEYVFTGIYTFEALIKILARGF
CLNEFTYLRDPWNWLDFSVITLAYLGEAIDLRGMSGLRTFRVLRALKTVSVIPGLKVIVG
ALIHSVRKLADVTILTVFCLSVFALVGLQLFKGNLKNNCLKNCTTNDSYEIHAWNDCHQG
KDYYYIKNGTSDPLLCGNGSDAGQCPPGYLCLKTSSNPDYNYTSFDSFSWAFLSLFRLMT
QDSWERLYQQTLRASGKIYMIFFVIVIFLGSFYLVNLILAVVTMAYEEQNQATIDEIEAK
EKKFQEALELLRKEQEVLEALGVDTSSLHSYSGSPPAFKTSSGRMHRMKSKMSEGSTEDN
KSPQSEPYNQHQKSFLGLTSGRRRASHGSVFHFRVPGRDVSFPDGTTDEGVLSGDQESNR
GSLLLGGSVSQQGPLPRSPLPEAPNRGSGLGEDGQTTLLASETVAPASGTIDISATDAGQ
KTFLSAEYLNEPFRVKRAMSVVSIMTSVLEEFEESERRCPPCFTNLAQKYLIWECSPMWL
KFKKILFEIVTDPFTELTITFCIVVNTVFMAMEHHGMSRAFDTMLQIGNYVFTGFFTAEM
FLKIIAFDPYYYFQKKWNIFDCIIVTISLMELGMSKKGSLSVLRTFRLLRVFKLAKSWPT
LNTLIKIIGNSVGALGNLTLILAIIVFIFALVGKQLLGENYKEKRTEIAANNEPWPRWHM
YDFFHSFLIVFRILCGEWIENMWLCMEVGQQSICLVLFLMVMVLGNLVVLNLFIALLLNS
FSADNLTAPEEDGEVNNLQVALARIQTFGGRIRKAFHSFFSRPCLLPKPKTEPHDLVVKL
PLSNSKVENHIMPEVLKDPQDELTDFITNANVWVSVPIAEAESDLEDLEEDAEDAQSSTQ
EAISSMQQEALQQAKKSERPVIPRSPDSKTSSEDLALYVDEKWKNKPTEAPVEGMDDTSS
SEGSTVDCPDPEEILKKIPELAEDLEEPDDCFTEGCVRHCPWCQVDTTKSPWVTGWQVRK
ICYRIVEHSWFESFIIFMILLSSGALAFEDYYLDQKPTVKALLEYTDRVFTFVFVFEMLL
KWVAYGFKKYFTNAWCWLDFLIVNISLTSLVAKILQYSDMAPIKALRTLRALRPLRALSR
FEGMRVVVDALVGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKFWKCIDTSDPLIFMSFN
NVTNKTECENKNETGQLFWVNVKVNFDNVAMGYLALLQVATFKGWMEIMYAAVDSPTEVD
LQPKWENSLYMYLYFVIFIIFGGFFTLNLFVGVIIDNFNQQKKKLGGQDIFMTEEQKKYY
NAMKKLGSKKPQKPIPRPLNKYQGFVFDIVTKQTFDIIIMVLICLNMITMMVETDDQSEE
KTKVLNKINQFFVAVFTGECVMKMFALRQYYFTNGWNVFDFIVVILSIGSLVFSAILKSL
ENYFSPTLFRVIRLARIGRILRLIRAAKGIRTLLFALMMSLPALFNIGLLLFLVMFIYSI
FGMASFPNVKYESGIDDMFNFKTFPNSMLCLFQITTSAGWDGLLSPILNTGPPYCDPNLN
ISNSSSGNCGSPAVGIIFFTTYIIISFLIVVNMYIAVILENFNVATEESTEPLSEDDFDM
FYETWEKFDPEATQFISFSALSDFANTLSGPLQIPKPNKNILIQMDLPLVPGDKIHCLDI
LFAFTKNVLGESGELDSLKANMEEKFMATNLSKASYEPIATTLRWKQEDISATVIQKAYR
SYVLHHSRTLSNAQRVPRAEEEIGSLPNEDFQGTYVANEHCVLPDKSVTSSATSFPPSYD
SVTRGLSDQINMSTSSSVQNEDEASSKTAIAPGP
NT seq
5865 nt
NT seq
+upstream
nt +downstream
nt
atggaattgccctttggatccctggaaactaccaacttccgccgactcaccccagagtcc
ctggtggagattgagaagcaaattgctgccaagaaggctgcaaagaaagtcaaaaagaag
tgcaaggagcaagtgaatgaaaaagagaagcctcggcctcagctggacttgaaagcctgc
aaccaactgcccaagttttatggggagctcccagctgagctggttggtgagcccttggag
gatctagaccccttttacagcacatgcaggacattcatggtgctgaacaaagggaggacc
atttcacggtttagcgctactcgggccctgtggttactcagtcctttcaacctgatcaga
agaacggccataaaagtttctgttcactcatatcctttgtggttcagtatgtttatcact
ctcactattttggctaattgtgtattcatggcccgaactgatcttccagagaaaattgag
tatgtcttcactggcatttatacctttgaagctttgataaaaatactggcaagagggttt
tgtctaaatgagttcacttacctgcgagatccttggaactggctggatttcagcgtcatt
acactggcataccttggtgaagcaatagatcttcgtgggatgtcgggcctgaggaccttc
agagttcttagagctttaaagacagtgtctgtgataccagggctgaaagtcattgtggga
gccctcattcactcagtgaggaaactggctgatgtgacaatcctcaccgtcttctgcctc
agtgtatttgccctggtgggcctacagctcttcaagggcaacctcaagaacaactgtctc
aagaattgtacaaccaatgactcctatgaaatacacgcttggaatgactgccatcaggga
aaagattactattacataaagaatggcaccagtgatcccttactttgtggcaatggatct
gatgcaggtcaatgccctcctggctacctgtgccttaaaacttctagcaacccagattat
aactataccagctttgattccttctcttgggccttcctctcactctttcgcctcatgaca
caggattcctgggaacgcctttaccaacagaccctgagggcatctgggaaaatctatatg
atcttttttgtgattgttatcttcctgggatctttctacctggtcaatttgatcttggct
gtggttaccatggcttatgaggaacagaaccaggcaactatagatgaaattgaagcaaag
gagaaaaagttccaggaggcccttgaactactccgaaaggagcaggaggtgctggaagca
ctaggagtggacacaagctctctccactcctacagtgggtctcctccagctttcaaaact
tccagtgggcggatgcacagaatgaagtcaaagatgtcagagggctccacagaggacaac
aaatctcctcaatctgagccctacaaccagcaccagaagtcttttctaggcctcacctct
gggagacgccgagctagtcatggcagtgtgttccatttccgggtccctggacgagatgtc
tcatttcctgatgggaccacagatgaaggagtcctgtcaggagatcaagaaagtaatcgg
ggatccctactgctgggtggaagtgtcagtcaacaaggtcctctccctaggagcccactg
cctgaagcccccaaccgtgggtctggacttggagaagatggacaaaccacactgctagcc
agtgagactgtagcaccagccagtggcaccattgatatctcagccacagatgctggacag
aagaccttcctgtctgcagaatacttaaatgagcctttccgtgtgaaaagagccatgagc
gtggtcagcatcatgacctccgtccttgaggaatttgaggagtctgaacggagatgcccg
ccttgcttcaccaacttggctcagaagtatctcatctgggagtgcagccccatgtggctc
aagttcaagaagattctctttgagatcgtgacggacccttttacagaactcaccatcacc
ttttgcatcgtggtgaacacagtcttcatggccatggagcaccatggcatgagcagagcc
tttgataccatgctccaaataggcaactatgtcttcactgggtttttcactgctgaaatg
ttcctcaaaatcatcgcctttgacccctactactacttccagaagaagtggaacatcttt
gactgcatcatcgtcaccatcagcctgatggaactaggcatgtccaagaaagggagcctg
tctgtgctgcggaccttccgcctgctacgtgtcttcaagttggccaagtcctggcccacc
ctaaacacgctcatcaagatcattggaaattctgtgggggcactagggaacctcacctta
atcctggccatcatcgtctttatctttgctctggttggcaagcagttgcttggggaaaat
tacaaggaaaagaggacggagattgcagctaacaacgaaccttggccccgctggcacatg
tacgatttcttccactccttcctcattgtcttccggatcctctgtggagagtggattgag
aacatgtggttgtgcatggaagtgggccaacagtctatctgcctggtccttttcctgatg
gtgatggtgttagggaacctggtggtactcaacttgtttatagccctactgctgaattct
tttagtgccgataacctcacagccccagaggaggatggcgaagtgaacaatctccaggta
gccctggcccggatccagacatttggtggccggatcagaaaggcctttcacagctttttc
agcaggccctgcctgctccccaagcccaagacagagccccacgatctggtggtaaagctt
cccctctccaactctaaagtggagaatcatatcatgcccgaggttctcaaggacccccag
gatgaactcaccgacttcatcaccaatgcaaatgtgtgggtctctgtgcccattgcagag
gccgagtctgacctcgaagacctggaagaagatgctgaggatgctcagagttccacgcag
gaagcgatttcctcaatgcagcaggaagccttgcaacaagccaagaaaagtgagcgccct
gtgatacccagaagcccagattccaaaacatcctctgaagatctggccttgtacgtggat
gagaaatggaagaacaagcccactgaggctcctgtcgaggggatggacgacaccagctcc
tcagagggcagcacagtggactgtccagacccagaggagatcctgaagaagattccggag
ctagccgaggacctcgaggagccagatgactgcttcacagaaggctgtgtccggcattgc
ccctggtgccaagttgacaccaccaagtccccatgggtcacaggttggcaggtgcgcaag
atctgctaccgtatcgtggagcacagctggtttgagagcttcatcatcttcatgatcctg
ctcagtagtggcgcattggcctttgaagactattaccttgaccagaagcctactgtgaag
gccttactggagtacactgaccgggtgttcacattcgtctttgtgtttgagatgctgctc
aaatgggtggcctatggcttcaagaagtattttaccaatgcctggtgctggctggacttc
ctcatagtgaatatttcactgaccagcctggtagcaaagattctgcagtattctgacatg
gcacccattaaagccctgcggaccctacgcgccctgaggcccctgcgcgcactgtcccga
tttgaaggcatgagggtggttgtggatgccctggtgggtgccatcccatccattatgaac
gtccttcttgtctgcctcatcttctggctcatcttcagtatcatgggcgtgaacctcttc
gcgggcaagttttggaaatgcattgatactagtgatccgcttatttttatgtcttttaat
aatgtgacgaacaagactgagtgtgaaaataaaaacgaaaccggccagttgttctgggtt
aatgtgaaggtcaattttgataatgttgctatgggttacctcgcacttctgcaggtggcg
acctttaaaggctggatggaaatcatgtatgcagctgtcgattccccaacagaggtggac
ctgcagcccaagtgggaaaacagcttgtacatgtacctgtattttgtcatctttattatt
tttggtggcttcttcacgctcaatctcttcgttggagtcatcattgacaacttcaatcag
cagaaaaaaaagctagggggacaggacatcttcatgacagaggaacagaagaagtactac
aatgccatgaaaaagctcgggtccaagaagccccagaagcccatcccacggcccctgaac
aagtaccaaggctttgtctttgacatcgtgaccaaacaaacttttgacatcatcatcatg
gttctcatctgcctcaatatgatcaccatgatggtggagactgatgatcagagtgaagaa
aagacgaaagtccttaacaaaatcaaccaattctttgtggccgtgttcacaggggagtgt
gtcatgaagatgttcgctttgagacagtattacttcaccaacggctggaatgtgtttgac
ttcattgttgtgatcctgtctattgggagcctggtgttttctgcgattcttaagtcactt
gaaaattacttctcccccaccctcttccgcgtcatccgcctggcccgcatcggccgcatc
ctcaggttgattcgagcagccaagggcatccgcaccctgctcttcgccctcatgatgtcc
ctacccgccctcttcaacatcgggctgctgctcttcctcgtcatgttcatctactccatc
ttcggcatggccagctttcctaatgtcaagtatgagagcggcatcgatgacatgttcaac
ttcaagaccttccccaacagcatgctctgcctcttccagatcacaacatcagcgggctgg
gatggcctcctaagccccattcttaacacaggccccccctactgtgaccccaatctgaat
atctccaatagctcttcagggaactgtggcagtccggctgtaggcatcatcttcttcacc
acctacatcatcatctcctttcttattgtggtcaacatgtacatcgcagtgattctggag
aacttcaatgtagctacggaggagagcacggagcctttaagtgaggatgactttgacatg
ttctatgagacctgggagaagttcgacccagaggctacgcagtttatctctttttcagcc
ctctcagactttgcaaacaccctctcagggccactgcaaatcccaaagcccaataagaat
atactaatccagatggacctccccttggtccccggagataaaatccattgtttggacatc
ctttttgccttcaccaagaatgttctgggggaatctggagagttggattccctgaaggca
aatatggaagagaagtttatggcgactaatctttccaaagcatcctatgaaccaatagcg
accaccctccgatggaagcaagaagatatttcggccactgtcattcaaaaggcctatcgg
agctatgttctacaccactccagaacactctccaatgcccagagggtacccagggctgaa
gaggagattgggtcactcccaaatgaagactttcagggcacatacgtggcaaatgaacat
tgtgtgctcccagacaaatctgtgacttcctctgccacatctttcccaccatcctatgac
agtgtcactagaggccttagtgaccaaatcaatatgagcacatccagctcagtacaaaat
gaagatgaagcttccagtaagacagcaattgcccctgggccctag
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