Suncus etruscus (white-toothed pygmy shrew): 125998167
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Entry
125998167 CDS
T09902
Symbol
SCN11A
Name
(RefSeq) sodium channel protein type 11 subunit alpha
KO
K04843
voltage-gated sodium channel type XI alpha
Organism
setr
Suncus etruscus (white-toothed pygmy shrew)
Brite
KEGG Orthology (KO) [BR:
setr00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
setr04040
]
125998167 (SCN11A)
Ion channels [BR:
setr04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
125998167 (SCN11A)
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
IQ_SCN5A_C
PKD_channel
GPHH
Motif
Other DBs
NCBI-GeneID:
125998167
NCBI-ProteinID:
XP_049622405
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Position
20:1817846..1917557
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AA seq
1784 aa
AA seq
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MKMDDRCYPVIFPDARNFRPFTADTLDAIRKRIAIQKEKKKSKTLTSDEPPPRPQLDLKA
SRKLPKLYGDIPRELVSKPLEDLDPFYRNHQTFMVLNKKRTIYRFSAKRALFILGPFNPI
RNLAMRISVHALFSMFIICTVIINCVFMASTGLNENANKTAEYVFIGIYVFEALIKILAR
GLILDEFSFLRDPWNWLDSIVIATGIVSLFPEVTVNLSALRSFRVLRALKAISVISGLKV
IVGALLRSVKKLVDVMILTLFCLSIFALVGQQLFMGNLSHKCVLKDCVNRTKNNSYEEYC
YEKKNNSNEFRLCGNWMENESACSPGFECHNTACNPDYGYTNFDNFGWSFLAMFRLMTQD
SWEKLYQQTLRTSGLYAVFFFVLVIFLGSFYLINLTLAVVTMAYEEQNRNVAAETEAKEK
MFQEAQQLLREEKEALIAMGIDRSSLNSLEASSFSPKKKKLFGSSTRKSFFVRKSRKDKP
SGSDSEEYSPTKPPLLEQTKRLSHTLSVDHTDELGDPFQRQRALSAVSILTITMQEQEKS
QEPCLPCGENLTSKYLVWNCSPLWMAIKKPLKIVMTDPFTELAITLCIIVNTVFLAMEHY
PMEKDFENMLNTGNLIFTGIFLAEMCLKIIALDPYHYFSRGWNIFDSIVALLSFADIMYT
WIVEKMYDRTRRSYFRSFRVLRIFKLAKSWPTLNTLIKIIGHSVGALGNLTVVLGIVVFI
FSVVSHQLFGSTFNATNTATNSCGIPQTVSERNRRWHMGDLFHSFLVVFRILCGEWIENM
WECMRETDDAMCIIVFLSIMVIGKLVVLNLFIALLLNSFSNEEQNGNLEEEMKKTKVHLA
FDRFHRAFCFLINTIRHFCCQHCRRQKLAKPKEMTDGFATENKGIIPLTGGPCTEFGVPT
STSKTLGVGQDRIWLAPLAEEEYDVEYLPKVNVQPIMQPEAEKKAYENPQETKNINSPGI
PSVEIVFSDDTFPSEQNPRKNSDALSLFSECSTIDPQDPFGRATEIVPKKQPGRCLPKGL
LFCFPCCVVDKRKSLWMLWWNLRKTCYQIVKHSWFESFIIFVILLSSGALVFEDDQLKDK
KHIKELLEFTDKFFTFIFMLEMFLKWVAFGFRKYFTNAWCWLDFIIVMVSVPTLIELNIL
KPFRILRALRPLRALSQFEGMKVVVYALMGAIPAILNVLLVCLVFWLIFCILGINFFSGK
FGKCVNETDGNSPLNYTFVANKSECESKNLNWTNLRVNFDNVGMAYLSLLQVATFKGWLD
IMYAAVDSREQGQQPGYEVNVYMYIYFVVFIIFGSFFTLNLFIGVIIDNFNQQQKKISGQ
DIFLTEEQKKYYNAMKKLGSKKPQKPIPRPLNKFQGFVFDIVTSQAFDIIIIIFIILNMI
CMMVESHGQHPTTEQILDNLNAAFVVIFTIECLIKIFALRQYYFTNGWNLFDCVVVVLSI
VSTMVSALENQHIPFPPTLFRIVRLARIGRILRLVRAARGIRTLLFALMMSLPSLFNIGL
LLFLVMFIYAIFGVNCFSKVEPEAGIDDIFNFKSFAHSMLCLFQITTSAGWDSLLSPMLK
SKDSCDSEPKNCHLSTIAIIYFVSYIIISFLIVVNMYIAVILENFNTATEESEDPLGEDD
FDLFYEVWEKFDPEATQFISYSALSDFADALPEPLRVPKPNRFQFLVMDLPMVNGERLHC
MDILFAFTTRVLGNSSGLDSMKAMMEEKFMEANPLKTLYEPIITTTKRMEEEKCASIIQK
AFRKHMIRMTRCLLEDRPHTMLQTLYNGDVPISGVKSEDKVHND
NT seq
5355 nt
NT seq
+upstream
nt +downstream
nt
atgaagatggatgacagatgctacccagtgatcttcccagatgcaagaaatttccgtccc
ttcactgctgacactctcgatgccattaggaagcggattgccatccaaaaggagaaaaag
aagtccaaaactctgacatcagatgaacccccacctcgacctcagcttgatttgaaggct
tccaggaagttgcccaagctctatggtgatattccccgtgagctggtgtcaaagcccttg
gaagatttagacccattctacagaaaccaccagacatttatggtattgaacaaaaagagg
acaatttaccgcttcagtgccaagcgtgccttgttcattctgggtcctttcaatccaatt
cgaaatttagccatgagaatctctgttcatgccctgttcagcatgtttatcatctgcacg
gtcatcatcaattgtgtgttcatggcctctactgggttgaacgagaacgcaaataaaact
gccgagtatgtcttcattgggatttatgtttttgaggctttaataaaaattttggcaaga
ggtcttattttggatgagttttctttccttcgagatccatggaactggttggactccatt
gtcatcgcaacagggattgtttcgttgtttccagaagtcacagtcaacctgtcagccctg
cgttcctttcgagtattgcgagctttaaaagcaatttctgtgatttcaggtctgaaggtc
attgttggggccttgttgcgctctgtgaagaagctggtagatgtgatgatcctgactctt
ttttgcctcagcatctttgccttggtaggtcagcagctcttcatgggaaatctgagtcac
aaatgtgtattgaaagactgtgttaatcggacgaagaataattcttatgaagaatattgc
tatgaaaagaaaaataattccaatgaattcagattgtgtggcaactggatggaaaatgaa
agtgcctgttctcctggatttgagtgccataatacagcttgcaatccagactatggttat
acaaattttgacaactttggctggtcttttcttgctatgttcaggcttatgacacaagat
tcctgggagaaattgtatcaacagaccttacggacctcagggctctatgcagtcttcttc
tttgtattggtcatcttcctgggatctttctacctgattaacttaactctagcagtagtc
actatggcttatgaagaacagaacagaaatgtagcagctgagacagaggccaaagagaag
atgtttcaggaagcccagcaactattaagggaggagaaagaggctctgattgccatggga
attgacagaagttcacttaattcccttgaagcatcgtctttttccccaaagaaaaaaaag
ctatttggtagtagtacaaggaagtccttctttgtgagaaagtctaggaaagacaagcct
tcaggatcagattctgaagaatattctccaacaaagccacctctcttagaacaaaccaaa
agactgtcccatactctctcagtggaccacaccgatgagctcggagaccccttccaaagg
cagcgggcactaagtgctgtcagcatcctcaccatcaccatgcaagaacaagaaaaatca
caggagccttgcctcccatgtggggaaaacctgacatccaaatacctcgtgtggaattgt
agtcccctttggatggctatcaagaagcccctgaagattgtgatgacggacccttttact
gaactggccatcactctctgcatcatagtcaacacagtcttcttggctatggagcattac
ccaatggagaaagattttgagaatatgctgaacacagggaatttgatttttactggcatt
tttttggcagaaatgtgcctaaaaatcatcgcacttgatccctaccattactttagccga
ggctggaacatttttgacagcattgttgctcttctgagttttgctgatataatgtacact
tggattgtagagaagatgtatgatcggactcgaaggtcctattttcgttcttttagagtg
ctgaggatcttcaaattagccaagtcctggcccactttaaacacactgataaaaatcatt
ggccactctgtcggagcacttggaaacctcactgtggtcctgggtatcgtggtcttcatc
ttctcagtggtcagccatcagctttttggatctacatttaatgccacgaatactgctacc
aactcctgtggcattcctcagacagtctcagaacggaacagacgttggcacatgggggat
ttatttcattcctttctggtggtgtttcgcatcctctgcggggaatggattgaaaacatg
tgggaatgtatgcgggaaacagacgacgcaatgtgtatcatcgtctttttgtctatcatg
gtgataggaaaacttgtggtactcaacctcttcattgcattgctgctcaattccttcagc
aatgaagagcaaaatggaaacctagaagaagaaatgaagaaaaccaaagttcatttagcc
tttgatcgattccaccgggccttttgttttttgataaatacaattcgacatttttgttgc
cagcactgcaggaggcaaaaattagcaaaaccaaaagagatgacagatgggtttgccaca
gaaaacaaagggattattcccctgacagggggcccatgtactgaatttggagttccaact
tctacatccaagaccttgggtgttggccaggatcggatttggctggctccacttgcagag
gaagagtatgatgttgaatatcttcccaaagttaatgtacagcctatcatgcagcctgag
gctgagaaaaaggcctatgaaaatccccaggagactaagaacataaacagtccaggaatt
ccaagtgtagaaattgtgttttctgatgatacctttccctcagagcagaatcctcgaaag
aattctgatgccctgagcttgttctcagaatgtagcactattgatccacaggatcccttt
gggcgggcaactgaaatagttcccaagaagcagccaggtagatgtttgcctaaaggcctg
ctgttttgctttccatgctgtgttgtagacaagagaaagtccctctggatgctctggtgg
aacctgcggaaaacctgctatcaaatagtgaaacacagttggtttgagagctttattatc
tttgtgattctcctgagcagtggggcactggtatttgaagatgatcagctcaaagataaa
aaacacatcaaagagttacttgaatttactgacaaatttttcacattcatttttatgctg
gagatgtttctgaagtgggtggcttttggatttaggaagtattttacaaatgcctggtgt
tggctggatttcataattgtgatggtctctgtgcccacactcatcgagttaaacatcttg
aaacccttccggattctccgagcactgcgtcccctgagagctctctctcagtttgaggga
atgaaggtggtggtctacgcgctcatgggtgcaatacctgccattctgaatgtcctgctt
gtctgccttgtattctggctcatcttttgcatcctgggcataaacttcttttctggaaaa
tttggaaaatgtgtgaatgaaacagacgggaactcccctttgaattacacttttgtagca
aacaaaagtgaatgtgaaagcaaaaatttaaactggaccaacctccgcgtcaattttgat
aacgtggggatggcttatctttccctgctgcaggtggcaacatttaagggttggttggat
attatgtatgcagctgttgattccagagagcaaggacaacagccaggctatgaggtgaat
gtatacatgtacatttactttgtcgttttcatcatctttggctcattcttcactctgaat
ctctttattggtgttattattgacaacttcaatcaacaacaaaaaaagataagtggccaa
gacatatttttgacagaagaacagaagaaatactataatgcaatgaaaaaattaggatcc
aaaaaacctcaaaaaccaattccaaggcctctgaacaaattccagggtttcgtgtttgac
atagtcacaagccaggcctttgacatcatcatcatcatcttcatcattctcaacatgatt
tgcatgatggtggaatcccatggacagcatcccaccacagaacaaatacttgataatctt
aacgcagcctttgtggtcatctttacaatcgagtgtctcataaaaatctttgctttgagg
caatactacttcaccaatggctggaatttatttgattgtgtggtcgtggtcctttctatt
gttagtacaatggtttctgccttggaaaatcaacacattccttttcctccgaccctcttc
agaattgtgcgcttggctcggattggtcggattctgagacttgttcgggccgcacgagga
atccggactctccttttcgctctgatgatgtcccttccctctctattcaacattggtctt
ctgctctttctggtcatgtttatttatgccatttttggtgtgaactgttttagtaaagta
gaaccagaggctgggattgatgacatctttaacttcaaatcttttgcccacagcatgctc
tgtctcttccagatcaccacatccgcaggctgggatagtcttctcagccccatgttgaaa
tcaaaggattcctgtgactctgagccaaaaaactgtcacctctcgaccatagccatcatc
tactttgtcagctacattatcatctcctttctcattgttgtcaacatgtacattgctgtg
attttagagaacttcaatacagccactgaagaaagcgaagaccctttgggggaggacgac
tttgatctcttctatgaggtctgggaaaagtttgatccagaagcgacacagtttatcagt
tattctgccctttcggatttcgcagatgcccttcctgagcctttgcgcgtgcccaaaccc
aatagatttcagttcctagtaatggacctacccatggtgaatggagaaagactgcactgc
atggatattctctttgcttttaccacaagggtgcttggtaattccagtggcctggacagc
atgaaagcgatgatggaagagaagttcatggaagccaatcctttgaagactttgtatgag
cccataatcaccaccaccaaaaggatggaagaggaaaaatgcgcttctatcattcaaaag
gcctttcgaaagcacatgatcagaatgacgaggtgtctcttggaagacaggcctcacaca
atgcttcagacactctacaatggagatgtgcctatctctggagtaaagtctgaggacaaa
gtccacaatgactga
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integrated database retrieval system
