Suncus etruscus (white-toothed pygmy shrew): 125998173
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Entry
125998173 CDS
T09902
Name
(RefSeq) CCR4-NOT transcription complex subunit 10-like
KO
K12607
CCR4-NOT transcription complex subunit 10
Organism
setr
Suncus etruscus (white-toothed pygmy shrew)
Pathway
setr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
setr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125998173
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
setr03019
]
125998173
Messenger RNA biogenesis [BR:
setr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
125998173
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_14
ARM_TT21_N
TPR_12
TPR_19
ARM_TT21
TPR_8
TPR_MalT
TPR_7
TPR_17
DUF6058
Motif
Other DBs
NCBI-GeneID:
125998173
NCBI-ProteinID:
XP_049622411
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Position
20:complement(7440515..7498397)
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AA seq
743 aa
AA seq
DB search
MAADRPADQGAEKQEGASQSSGITDREKELSTSAFQAFTAGNYDACLQHLACLQDINKDD
YKIILNTAVAEFFKSNQTTTDNLRQTLNQLKNQVHSAVEEMDGLDDVENSMLYYNQAVIL
YHLRQYTEAISVGEKLYQFIEPFEEKFAQAVCFLLVDLYILTYQAEKALHLLAVLEKMVS
QGNNNKNGKNEAGNNSNKDGSNHKTEGGALIEVAKSKIHQYKVRAYIQMKSLKACKREVK
SVMNTAGNSAPSLFLKSNFEYLRGNYRKAVKLLNSSNIAEHPGFMKTGECLRCMFWNNLG
CIHFAMSKHNLGIFYFKKALQENDNVCAQLSAGSSDPGKKFSGRPMCTLLTNKRYELLYN
CGIQLLHVGRPLAAFECLIEAVQVYHANPRLWLRLAECCIAANKGTSEQETKGLPSKKGI
VQSIVGQGYHRKIVLASQSIQNTVYNDGQSSAIPVASMEFAAICLRNALLLLPEEQQDSK
QENGSKNSNPLSGNPESSESSETSSSKSHDGDKFIPAPPSSPLRKQELENLKCSILACSA
YVALALGDNLMALNHADKLLQQPKLSGSLKFLGHLYAAEALISLDRISDAITHLNPENVT
DVSLGISSNDQEQGSEKGDSEAMESSGKRAPQCYPSSVNSARTVMLFNLGSAYCLRSEYD
KARKCLHQAASMIHPKEVPPEAILLAVYLELQNGNTQLALQIIKRNQLLPAVKTLSEMRK
KPVFQPVHPIQPIQIPAFPVQRK
NT seq
2232 nt
NT seq
+upstream
nt +downstream
nt
atggctgcagacaggcccgcagatcagggagcggagaaacaggaaggggcaagccagtct
tctgggatcactgatcgagaaaaggagttgtccaccagtgctttccaagctttcacggct
ggaaattacgatgcctgtctacaacaccttgcctgcctgcaagatataaacaaagatgac
tataaaataattttgaataccgccgtagctgagttttttaaaagtaaccaaacaacaaca
gataatttgagacaaacacttaaccagctgaagaatcaggtccactcagctgttgaagaa
atggatggcttagatgatgttgaaaacagcatgttgtattacaatcaagcagtcattctt
taccatctgcgacaatatacagaagcaatatcagttggtgaaaaactttatcaattcata
gaaccttttgaagaaaaattcgcccaagcggtctgttttttgcttgtagacttgtacata
ctaacctatcaggctgagaaagctttacatcttctggctgtcctagagaaaatggtttca
cagggtaataataacaaaaatggaaagaacgaagctggtaataatagcaacaaagatgga
tctaatcataaaactgaaggtggagctctaatagaagtagcaaagtccaagatacatcag
tataaagtgagagcttatatccagatgaagtccctaaaagcctgcaaaagagaggtgaag
tctgtcatgaacacagctggaaattctgcgccctctctgtttcttaagagcaattttgag
tacttaagaggcaattatcgaaaagctgtaaagctgttaaacagttcaaacattgctgag
catccaggattcatgaaaacaggtgaatgtttaagatgcatgttttggaataatctgggt
tgcattcattttgccatgagcaagcacaatttggggattttctactttaaaaaggctcta
caagaaaatgataatgtctgtgcacaacttagtgcaggcagtagtgatccaggcaagaag
ttttcaggacgacccatgtgcacgttactgaccaacaagaggtatgagttgttgtataac
tgcggaattcagctgctgcacgtcgggaggccactggctgccttcgaatgtctgattgaa
gctgttcaggtttatcacgcaaatcctcgcctctggctccggctggccgagtgctgcatt
gccgccaataaggggacttctgaacaagaaacaaaaggtcttcccagcaagaaaggaatc
gtacagtcgattgttggtcaaggttatcatcgtaagatagtgttggcatcacagtccata
cagaataccgtatataatgacggacaatcttcagcaattcctgtagccagtatggagttt
gcagctatttgtctcagaaatgccttattgttgttgcctgaagaacaacaggattcaaaa
caggaaaatggatccaaaaatagtaatccattaagtggaaaccctgaaagcagtgaaagc
agtgaaacgagcagcagtaagagtcatgatggagataaatttatcccagctccaccatct
tctcctttgagaaaacaagaactcgaaaatctaaaatgctcaatcctagcgtgtagtgct
tacgtggctctggctttgggagataaccttatggctttgaatcacgcagataaacttctt
cagcaacccaagctatccggatctcttaagtttctgggccatttgtatgctgcagaagcc
ctcatctctctggacagaatatctgatgccattactcacttgaatccagaaaacgtcact
gatgtctccttagggatctcttccaatgatcaggaacaaggctcagaaaaaggggacagt
gaagcaatggaatcctctggaaaaagggccccccagtgctaccccagttctgttaactcc
gcgaggacggtgatgttatttaaccttggcagtgcttactgcttgagaagcgagtatgac
aaagcacgcaagtgtcttcaccaggcggcttccatgatccaccctaaagaagtgcctccc
gaagccatcttattggcagtctacctggaactgcagaatggtaacacccagctggcctta
cagatcatcaaaaggaatcagctgctgcctgcagtgaaaacactctctgaaatgagaaag
aagccagtgttccagcccgtgcacccgatccagcccatccaaataccagctttccctgtt
cagagaaagtga
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