Suncus etruscus (white-toothed pygmy shrew): 125998218
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Entry
125998218 CDS
T09902
Name
(RefSeq) collagen alpha-6(VI) chain-like
KO
K06238
collagen type VI alpha
Organism
setr
Suncus etruscus (white-toothed pygmy shrew)
Pathway
setr04151
PI3K-Akt signaling pathway
setr04510
Focal adhesion
setr04512
ECM-receptor interaction
setr04820
Cytoskeleton in muscle cells
setr04974
Protein digestion and absorption
setr05165
Human papillomavirus infection
Brite
KEGG Orthology (KO) [BR:
setr00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
125998218
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
125998218
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
125998218
09142 Cell motility
04820 Cytoskeleton in muscle cells
125998218
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
125998218
09160 Human Diseases
09172 Infectious disease: viral
05165 Human papillomavirus infection
125998218
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
setr04147
]
125998218
00536 Glycosaminoglycan binding proteins [BR:
setr00536
]
125998218
Exosome [BR:
setr04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
125998218
Glycosaminoglycan binding proteins [BR:
setr00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
125998218
Hyaluronan
Extracellular matrix or blood plasma proteins
125998218
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
VWA_2
Collagen
VWA_3
vWA_SIBA-E
Integrin_beta
Motif
Other DBs
NCBI-GeneID:
125998218
NCBI-ProteinID:
XP_049622442
LinkDB
All DBs
Position
20:25654276..25781198
Genome browser
AA seq
2262 aa
AA seq
DB search
MKMLLILFLLTICSQVSMSQDSDLRYADVVFLVDSSDELGSKSFPHVRTFITKMINSLPI
EANKYRVALARYSNTLHNEFQLSTYKSKNPMLNHIKKNFGFLGGSLQIGNALQEAHRTYF
SGPTNGRDKKQFPPILVVLASGESEDDVEVAAQALRKDGVRIISVGMQKASEENLRTMAT
GPFHFKLRTVRDLSTFSQNMTDIIKEATKYQDGVMDDVHVEVCQGPSVADLVFLLDMAIN
GSLENFDYIRGFLEESISALDIKENCMRVSLVAYSNETKVINPLNKGVNKSELLQYIQNL
SPLAGEAYMGAAIRKIRKEVFSVQLGSRKNQGVPQIAVLMAHRPSEDNVTKAAANLRRQG
VTVFTMGIEGANHSQLKKIASHPAEQYVSKLESFSHLAAHNQTFLKKLRNHITHTVSVFS
ERTLTLKSGCEDTEEADIYLLIDGSANIQATDFQETKTFLSDVIRMFNIAPQKVRVGAVQ
YADRWDLEFEINKYSNKHDLVKAIENIRQMDGGLRTGAALNYTLGLLQKARKQRGNKVPC
HLLVLTSGTSKDSVVEPAHRLRDEFIHVHAIGVNGANQTQLREIAGEKGVYYVHDFDALK
DIRNQVVQEICTEEACREMKADIMFLVDSSGSIGLENFDKMKAFMKNLVSKSQIGEDRVQ
IGVVQFSHINKEEFPLNRYTSQGEIFSAIEDMEHIGETTMTGSALTFVSQYFSPAKGARP
NVRRFLILITDGEAHDIVKDPAEALRQEGIIIYSVGVFGSNVTQLTEISGKPELVFYVEN
FDILQHIEDDLVFGICSPHEECKRIEVLDVVFVIDSSGSIDSNEYTIMKNFMIDLVKKAD
IGKNKVRFGALKYAENPEVLFYLNKFDTKREVISALQKDEPIGGSTYTAKALHFSEHMFT
EALGSRLQKGVPQVLIVITDGESHDSDRLNATAKALRDKGILVLVVGIDGANTEELLAMA
GSNDKYYFVKTFGGLKGIFSDVSASVCNSSKVDCEIEKVDLVFLMDGSNSIGSDDFRKMK
EFLASVVQDFDVSSSRVHIGAAQFSDSYRSEFQLGAFRGKEEISQQIENIQQLFGYTHIG
AALQKVARYFLPDTGSRIIAGVPQVLLVLTDGRSQDEVAQAAEELRHKGIDIYSVGIGNV
DDQQLVQITGTANKKLTVHNFDELKKVKKRIVRNICTAGGESNCFVDVVVGFDISTQQNG
QTLLEGQSWMESYLPKILHAISSLNGVSCEVGTETQVSVAFQVTHAMEKYTPKFEIYSDT
ILNSLKDVTVKGPSLLNENLLSSLWDTFQNKSAARGKVILLFSDGLDEDIEKLEQKSDEL
RKEGLNALITVALDGAMDSSDLNELPYIEFGKGFEYQTQLTLGMRDLGSRLSKHLVNVAE
RTCCCLFCKCIGEDGTMGDPGPSGKKGLKGFKGSEGYLGEEGISGERGEMGPLGAQGTKG
CSGIKGPKGYRGLNGQEGEDGEIGIDGLNGEQGDSGPPGEKGEKGDAGSQGSPGERGISG
DHGSQGLRGDPGDPGVDNSRQGPKGLKGEHGRQGRRGLPGLPGPPGSRRQTVVHGRRGLP
GPQGEAGNQGPDGFPGSLGFRGPQGSRGEIGVKGEKGSLGSKGPQGPHGPEGKAGSPGRL
GSQGHKGDPGDLGDKGALGLPGPRGLPGDYGIQGYGGIGRKGTKGQEGFPGESGLKGDVG
DPGDKGEIGPKGARGKMMSSGIPGEQGSRGDPGPPGLRGAKGSKGLPSFSACELLQYVRD
HSPGRNGMPECPVHPTELVFALDQSRGVTQDEFERMKEMMASVVQTIRVRDHNCPVGARV
AILSYSSHTRHLVRFSDAYSKTRLLQEIEAIPFETSSENREMGKAMRFISRNVFKRTLPG
PHTRRITTFFSSGQSNDVQTITTATMEFSALDIVPVVIAFNNVPSVKRAFAIDDTGTFQV
IVLPSGTEHTSALERLQLCTFCRDVCNPDASCEEQTTRPSPPPSYVDAAILLDSSWHLGS
LEFEDIRGFLGSLLDHFEITPEPETSTTGDRVALVSYAPPDFRPHMHKSPVRTEFNLTTY
NSKHRMKRHLENSVQQLHGDAFIGHALQWTLDNIFTGTPNLRRQRVIFVISAGETSPLDR
DTLKKESFRAKCQGYALFVFSLGPTWNDKELEDLASQPLDHHLVQLGRIHKPDHRYGVKF
AKSFVNSIRRAINKYPPINFKTKCNRLSSTNGKTSPQVLRSSVPGPQKALLKDAFQKAKF
FQDKKVSSRVARGSNEKTVRNFTKSISHAFKSGKKMIKASSK
NT seq
6789 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatgctgctgattttgtttctcctaacaatttgttcccaagtttctatgagccaa
gattctgacctcaggtatgcagatgttgtgtttctggtggacagttctgatgagctggga
agcaagtccttccctcatgtgagaaccttcatcaccaagatgatcaacagtctccctata
gaggccaacaagtaccgtgtggcgctggcccggtacagtaacacactacataatgaattt
caactgagcacctacaagagcaagaaccccatgctgaaccacatcaagaagaacttcggg
ttccttgggggctccctacagataggaaacgctctccaggaagcccacaggacctatttt
tctggacccacaaatggcagagataagaagcaattcccccccattttggtggtcctggcc
tcaggtgaatctgaggatgatgtggaggtggctgcacaggccctgcgaaaagatggggtg
aggatcatctccgtggggatgcagaaggcttctgaagagaacctgaggaccatggccacg
ggtccatttcacttcaaacttcggacagtcagagacctcagcacattttcccagaacatg
actgacatcatcaaagaagcaactaagtaccaggatggagtcatggatgatgttcatgta
gaagtttgccaaggcccttctgttgctgacttagtgtttctattggacatggccatcaat
gggagcctggagaactttgattatattagaggattcctggaagaaagtatatctgctctt
gacataaaagaaaactgcatgagagttagcctggtggcctatagcaatgagacaaaggtg
ataaatccactgaacaagggtgtgaataagtcagaacttcttcagtatattcagaatctc
tctccattggctggggaggcctacatgggtgctgccataagaaagatcaggaaggaagta
ttcagtgtccagcttggtagtcggaagaatcagggagtgccccagatcgctgtgctcatg
gctcataggccatcagaagacaatgtaaccaaagcagctgccaatctccggcgccaaggt
gtgactgtcttcaccatgggcatcgagggggccaaccactcccagctgaaaaagatagca
tctcaccctgcagagcaatatgtttctaagctggaaagtttctcccatctggctgctcac
aaccagacatttttgaagaagctgcggaaccacatcacgcacaccgtctccgtgttctca
gagcgcactctaacactcaagtcaggttgtgaggatacagaagaagcagacatttatctg
ctcattgatggctcagcaaacatccaggccacggatttccaagaaacaaaaacctttttg
tcagatgtcataaggatgttcaacattgctccccaaaaggtgcgggttggggccgttcag
tatgctgatcgctgggacctggaatttgagatcaacaaatattctaacaagcatgatttg
gtaaaggccatcgagaatattcgacagatggacgggggcctacgcacaggtgctgctcta
aactatacactagggctactacagaaagccaggaagcagcgaggaaacaaagtaccatgt
catcttctggtcctaaccagtggcacatccaaggacagtgtcgtggagcctgcacacagg
ctaagagatgaattcattcatgtgcacgccattggggtgaatggggccaatcaaacccag
ctgcgagaaattgcaggcgagaagggggtctactatgtgcatgattttgatgctttgaaa
gacatccgaaaccaggttgttcaagaaatttgtactgaagaagcttgcagggagatgaaa
gccgacatcatgtttctggtggacagttctggcagcataggccttgaaaactttgacaaa
atgaaagcctttatgaaaaaccttgtgagcaaatctcagattggggaagatcgggtacaa
attggtgtcgtccagttcagccacattaacaaggaagaattcccactcaacagatataca
tcccaaggtgaaattttcagtgcaatagaagatatggaacacattggagaaaccaccatg
accggcagtgctctgacctttgtgtctcaatattttagtcctgcaaaaggggcccggccc
aatgtcaggaggtttcttatcctcatcacagatggcgaagctcatgacatagttaaggac
ccagcagaagcactacggcaagaaggcataattatctactctgtgggggtatttggctcc
aatgtcacccagcttacagagatcagtggaaagccagagttggttttttatgttgagaat
tttgacattctgcagcacattgaagatgatctcgtttttggaatatgcagcccccatgaa
gaatgcaaacggattgaagtcttagatgttgtgtttgtaattgacagctctggcagcatt
gattctaatgaatatactatcatgaagaacttcatgattgacttggtaaaaaaagctgat
attggcaagaataaggttcgatttggggctctgaaatatgctgaaaatccagaggtgttg
ttttatctgaacaaatttgatacaaaaagagaggtgatctcagccctccagaaagatgaa
cccatcgggggtagtacttatacggcaaaggccctacatttctcagaacacatgttcacc
gaagccctgggtagccgcctccaaaagggcgtcccccaagtcctcattgtcatcactgat
ggggaatcccatgattcagatagactcaatgccacagccaaggctcttcgagacaaaggc
attctggtcctggtcgtgggcattgatggtgccaatactgaggagctgctagccatggca
ggatcaaatgacaagtactactttgtgaagacttttggaggcctgaaaggcatattttca
gatgtgtcagccagtgtgtgcaactcttcaaaagtagattgtgaaattgaaaaagtagac
ctggttttcctcatggatggctcaaacagcatcggctccgatgacttcaggaagatgaaa
gaattcttggcatcggtggttcaagactttgatgtcagctctagcagagtgcacatagga
gcagcccagtttagtgattcctaccggtcagagttccaactgggggccttcagaggcaaa
gaagaaatctctcagcagattgaaaacattcagcagctctttggatacacgcatattggg
gctgcactccaaaaggtggcacgttacttcctgccagacacaggcagccggatcattgca
ggtgtcccccaagtgttgttggtcctcacggatggccggtcccaggacgaagtggcccag
gcagctgaagagctgaggcataaaggcatcgacatctattctgtgggcatcgggaatgtg
gatgaccagcaactagtacaaatcaccgggaccgcaaataaaaaactgacagttcataat
ttcgatgagctgaaaaaggtcaagaagaggatcgttcgcaacatctgtactgcagggggt
gagagcaattgtttcgtggatgttgtggtaggatttgacatttcaactcagcagaatgga
cagactttgcttgaaggtcagtcttggatggaaagctatcttccaaagattttacatgcc
atcagctccctcaatggggtcagctgtgaggtgggcacagaaactcaggtcagtgtggct
tttcaagtgacccatgccatggaaaaatatacacccaagtttgagatctacagtgacacc
atattgaacagcctgaaggatgtaacagtgaaaggaccatctctcctcaatgaaaatctc
ttgagttctctttgggacacatttcagaataaatcagctgctcgaggaaaggtgattctt
ttattttcagatggattggatgaagacattgaaaaacttgaacaaaaatctgatgaactt
agaaaagaaggcctgaatgccctcatcactgttgctctggatggagccatggattcaagt
gacttaaatgagcttccctacattgaatttgggaaaggatttgaataccaaacccagctc
actcttggaatgagggatcttgggagccgactctcaaagcacctggtcaacgttgctgaa
aggacgtgctgctgtttattctgcaagtgcataggggaagatggcaccatgggagatcct
ggaccatctggaaaaaagggactcaaaggttttaaaggtagtgaaggttacctgggcgag
gaaggcatttctggagaaagaggagaaatgggacctttgggagctcaagggaccaaggga
tgctctggtatcaaaggccctaaggggtatcgaggactgaatggacaagagggagaagat
ggggaaattggcattgatggattaaatggagaacagggtgacagtggtcctcctggagaa
aagggagaaaaaggcgatgcaggatcccagggaagtccaggagagagagggatttcgggt
gaccatggttcacagggccttcgaggagatcctggagatcctggagttgacaatagcaga
caaggccccaaaggcttgaaaggagaacatggaagacaaggaagaagaggcttgccaggc
ctcccgggacccccaggatctagaagacagacagtagttcatggtcgaagagggcttcca
ggccctcagggagaagcaggaaaccaaggtccagatggatttccaggctccctgggattt
cggggccctcagggctcaagaggagagattggtgtcaaaggagaaaaaggaagtctggga
agtaaaggtccccagggacctcatggaccagaaggaaaagcaggaagcccaggccgtttg
ggaagccaaggacataaaggagatcctggagatctgggcgacaaaggagctcttggcctt
cctggtccccgaggattgccgggtgattatggcatccagggttatggtggtatcggaaga
aaaggcaccaagggacaagaaggatttcctggagaaagtggacttaagggtgatgttgga
gaccctggtgacaaaggagaaataggacccaaaggagcaagaggaaagatgatgtcttct
gggatcccaggagagcagggatcacgtggggatccgggacctcctggacttaggggtgcg
aaagggagcaagggactgccatcattttccgcatgtgagctccttcaatatgtgcgggac
cacagtcctggccgaaatgggatgccagaatgccccgtgcaccccactgagctggtgttc
gccttagatcagtcccgaggtgtcacccaggatgagtttgagcgcatgaaggagatgatg
gcttctgtggtccagaccattcgagtgcgggaccacaactgcccagtgggagcccgtgtg
gccatcctttcctacagctcccataccaggcacctggtgcgcttctctgacgcctattcc
aagacccgacttctccaggaaattgaagcaattcctttcgagacatcatcagaaaaccga
gagatgggcaaagccatgaggttcatttccaggaacgtcttcaagcgaaccctcccaggg
cctcacaccagaagaatcaccacctttttcagcagtggccaatcaaatgatgtccagacc
atcaccacagctacaatggaattcagtgccctggatattgttcccgtggtgattgctttc
aacaatgtgccctcagtcaaacgtgcctttgcgattgatgacactggcacattccaagtc
attgtgcttccctctgggactgagcacacttcagccttggagcgacttcagctgtgcact
ttctgtcgtgatgtgtgtaaccctgatgcttcctgcgaggaacaaactactagaccctct
cctccgccatcctacgtggatgctgccatccttcttgatagctcctggcacctgggtagt
ctagaatttgaagacatccgaggattcctcgggtcactgttagatcactttgaaatcact
ccagaacccgagacctcaaccactggagatcgggtggccctagtgagttatgctcctcct
gacttccggccccacatgcacaaaagtcccgtaaggaccgaatttaacctgaccacctac
aacagtaaacatcgcatgaagcggcacctggagaactcagtccagcagttacatggagat
gctttcataggtcatgccttgcagtggaccctggacaatatctttacagggacacccaat
ctgagaaggcagagagtcatatttgtgatctctgctggggaaaccagtcccttggacagg
gacacattaaagaaggaatccttcagagccaagtgtcaaggttatgccctgtttgttttc
tcccttggcccaacttggaatgataaggagttggaagatctagccagccagcctttggat
caccacttagtccaacttggccgaattcataagcctgaccacagatatggtgtgaagttt
gcgaagtcatttgtaaattcaattcgacgtgcaatcaacaaatacccaccaataaacttc
aaaacaaagtgcaacaggctcagctctacaaatggcaaaacatctccccaagtgttgcga
agttctgtacctgggccacaaaaagctctcctcaaagatgcatttcagaaggccaaattc
tttcaagataaaaaagtttcttccagagttgcaagaggcagcaatgaaaaaactgttaga
aattttaccaaaagcatatcccatgcctttaaaagtggaaaaaagatgataaaagcttct
tctaagtga
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