Suncus etruscus (white-toothed pygmy shrew): 126000928
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Entry
126000928 CDS
T09902
Symbol
MTREX
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
setr
Suncus etruscus (white-toothed pygmy shrew)
Pathway
setr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
setr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
126000928 (MTREX)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
setr03019
]
126000928 (MTREX)
03041 Spliceosome [BR:
setr03041
]
126000928 (MTREX)
03009 Ribosome biogenesis [BR:
setr03009
]
126000928 (MTREX)
03016 Transfer RNA biogenesis [BR:
setr03016
]
126000928 (MTREX)
Enzymes [BR:
setr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
126000928 (MTREX)
Messenger RNA biogenesis [BR:
setr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
126000928 (MTREX)
Spliceosome [BR:
setr03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
126000928 (MTREX)
Complex C
U4/U6.U5 tri-SnRNP related factors
126000928 (MTREX)
Ribosome biogenesis [BR:
setr03009
]
Eukaryotic type
Pre-60S particles
Helicases
126000928 (MTREX)
Transfer RNA biogenesis [BR:
setr03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
126000928 (MTREX)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
126000928
NCBI-ProteinID:
XP_049624066
LinkDB
All DBs
Position
2:113876727..113942842
Genome browser
AA seq
1042 aa
AA seq
DB search
MADAFGDELFSVFEDDATTAAGTKKDKEKEKAKWKGPPGSAEKPGNHVAEKLQSESTTAA
KTKRDADFEGTDEPIFGKKLRVEETITEDISLADLMPRVKVQSVETVEGCTHEVALPADE
DYLPLKPRVGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALR
EKQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGS
EVMREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLH
KQPCHVIYTDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGD
QKGRKGGTKGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMV
EEVFSNAIDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALF
ATETFAMGINMPARTVLFTNARKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVD
EKMSPTVGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAIPG
VVEKVKNSEEQYNKIVIPNEESVVIYYKIRQQLAKLGKEIEEYIHKPKYCLPFLQPGRLV
KVKNEGDDFGWGVVVNFSKKSNVKPNSGELDPLYVVEVLLRCSKESLKNSATEAAKPAKP
DEKGEMQVVPVLVHLLSAISSVRLYIPKDLRPIDNRQSVLKSIQEVQKRFPDGVPLLDPI
DDMGIQDQGLKKVIQKVEAFEHRMYSHPLHNDPNLETVYTLCEKKAQIAIDIKSAKRELK
KARTVLQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDL
SAEQATALLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEESYLN
AFKPHLMDVVYTWATGATFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELE
NKFAEGITKIKRDIVFAASLYL
NT seq
3129 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgccttcggagatgagctcttcagcgtgttcgaagacgacgcgaccactgcg
gccgggacgaaaaaagacaaagagaaagagaaggcaaagtggaaagggccgccggggagt
gcggaaaagccgggaaatcatgttgctgaaaaattgcagtcagaatcgactactgctgca
aagaccaagagagatgcagattttgaaggcacagatgaacccatttttggaaagaaactc
agagtagaagagacaataactgaagatataagtttggcagacttgatgcccagagttaag
gtacaatctgttgaaactgttgaaggatgtacacatgaggttgcacttcctgccgatgaa
gattacttacctctgaaaccccgagttggaaaagctgcaaaggaatatccattcattctt
gatgcttttcaaagagaagcgattcagtgtgttgataataatcagtctgttttagtatct
gcacacacatccgcaggaaaaactgtatgtgctgagtatgccattgcattggcattaagg
gaaaaacaacgtgtaatctttaccagtccaatcaaagctctgagtaaccaaaagtatcgt
gaaatgtatgaagaattccaagatgttggtctgatgactggagatgttactataaatcct
acagcttcttgtcttgttatgaccacggagattttgagaagcatgctatacagaggttct
gaagttatgcgagaagttgcttgggtcatatttgatgaaattcattacatgagagattca
gagcgtggtgtggtatgggaagaaactattattttgcttcctgataatgtccactatgtc
tttctttcggctactatcccaaatgcccggcaatttgctgaatggatttgccatttacat
aaacagccttgtcatgtaatctacacagattatcggcctactccattgcagcactacatt
tttccagcagggggagatggcttgcatcttgtggttgatgaaaatggtgacttcagggaa
gataatttcaatactgcaatgcaagtacttcgagatgcaggtgatttggctaaaggagat
cagaaagggcgtaaaggaggaacaaaaggcccgtcaaatgttttcaagattgtgaagatg
attatggaaagaaattttcaacctgtgattattttcagttttagtaagaaagattgtgaa
gcctacgcacttcagatgaccaaattagatttcaacacagatgaggaaaagaagatggtt
gaagaagtgttcagcaatgcaattgactgcttgtctgatgaagataaaaagctccctcag
gttgaacatgtgcttcctcttctgaagcgggggattggtattcatcatggtggtttactt
cctattttgaaagaaactatagaaatcctcttttctgaaggattgataaaggccttgttt
gctacagagacttttgctatgggcattaacatgccagcaagaactgtcttatttacaaat
gcccgaaaatttgatgggaaggactttagatggatttcctctggtgaatacattcagatg
tctggtcgcgctggaagaaggggaatggatgacagaggaattgtaattcttatggtggat
gaaaagatgagcccaaccgttggaaaacagttacttaagggttctgcagatcctctaaat
agtgctttccatttgacctacaatatggttttgaatttactacgtgtagaagaaattaat
cctgaatacatgttggaaaagtccttttaccaattccagcattatagagcaattccagga
gtagtagagaaggtaaagaattcggaagaacaatacaataaaatagtaataccaaatgaa
gaaagtgtagttatctactataaaattagacagcagttggccaaactgggtaaagaaatt
gaagaatatattcacaaaccaaaatactgcttaccatttctgcaaccaggtcgtttggta
aaggtaaagaatgaaggagatgattttggctggggagtagtagtaaatttctcaaaaaag
tcaaatgttaagcctaattctggtgaactagatcctttatatgtagtagaagtacttctg
cgctgcagcaaagagagcttgaaaaattcagccaccgaggcagcaaaaccagctaagcct
gatgagaaaggagaaatgcaggttgttccagttttggtacatcttctgtctgctattagc
agtgttagactttatattcctaaagaccttcgaccaatcgacaatagacagagtgttcta
aaatcaatacaggaagttcagaaacgttttcctgatggtgttcccttattagaccctatt
gatgatatgggtattcaagatcaagggttgaaaaaagttatccaaaaagtagaagctttt
gagcaccgaatgtattctcatccacttcacaatgatccaaatttggaaactgtgtataca
ctttgtgaaaagaaagcacagattgcaatagatattaaatctgcaaaacgagaactaaag
aaagcaagaactgttctgcaaatggatgagctcaaatgtcgaaaacgtgtcctccggagg
ttggggtttgccacttcttctgatgtcatagagatgaaaggacgagtggcttgtgagata
agcagtgctgatgaactcctcctaactgagatgatgtttaatggccttttcaatgacctg
tctgctgaacaggcaacagcactactaagctgctttgtgtttcaagagaattccagtgag
atgcccaaattgacagagcaattagcaggaccacttcgtcaaatgcaggaatgtgctaaa
agaatcgcaaaagtttcagcagaagccaaattggaaattgatgaggaaagttatctaaac
gctttcaaacctcacttaatggatgtagtatatacctgggcaacaggagctacttttgct
catatctgcaaaatgacagatgtctttgaaggcagcataattcgttgtatgaggcggtta
gaagaactacttcggcaaatgtgtcaagctgcaaaagctattgggaacactgaactagaa
aataaatttgcagaaggaatcaccaaaatcaagagagatattgtgtttgctgccagcctc
tacttataa
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