Suncus etruscus (white-toothed pygmy shrew): 126001230
Help
Entry
126001230 CDS
T09902
Symbol
CIITA
Name
(RefSeq) MHC class II transactivator
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
setr
Suncus etruscus (white-toothed pygmy shrew)
Pathway
setr04612
Antigen processing and presentation
setr05145
Toxoplasmosis
setr05152
Tuberculosis
setr05164
Influenza A
setr05340
Primary immunodeficiency
Brite
KEGG Orthology (KO) [BR:
setr00001
]
09150 Organismal Systems
09151 Immune system
04612 Antigen processing and presentation
126001230 (CIITA)
09160 Human Diseases
09172 Infectious disease: viral
05164 Influenza A
126001230 (CIITA)
09171 Infectious disease: bacterial
05152 Tuberculosis
126001230 (CIITA)
09174 Infectious disease: parasitic
05145 Toxoplasmosis
126001230 (CIITA)
09163 Immune disease
05340 Primary immunodeficiency
126001230 (CIITA)
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
setr01001
]
126001230 (CIITA)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
setr04054
]
126001230 (CIITA)
Enzymes [BR:
setr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
126001230 (CIITA)
Protein kinases [BR:
setr01001
]
Serine/threonine kinases: Other
TAF1 family
126001230 (CIITA)
Pattern recognition receptors [BR:
setr04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
126001230 (CIITA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
LRR_6
NLRC4_HD2
LRR_4
LRR_8
LRR_14
AAA_16
nSTAND_NTPase5
LRR_9
Motif
Other DBs
NCBI-GeneID:
126001230
NCBI-ProteinID:
XP_049624402
LinkDB
All DBs
Position
2:10631386..10651667
Genome browser
AA seq
1049 aa
AA seq
DB search
MDLGSLEGGYLELLNSSADPLQLYHLCDHLDLAGDDIETCSEPDKDTISYEQFNRLFCAI
EDDEETREAYNSIADLDYYIFQDSQLDGLSKDMFIKHIGLEELPGETVGAPEEAGQRSPK
RPCPEEPLPADAKHRRLVSPLSTSSGTCLSLPAGPLQIIPTLPQALWQISSDNTGLPSLL
IYSSETLQMSNKLPVCSPAVQSLPEAPGQPGPTSPFAPSAADLPSMPEPALTSRENAAED
MVPHISNPEAPEGATKLPKWPEIVEQFQQSLRDKYQAEPLGSEGFLVEVDLVRAQLERSS
SKSQEREPVILDWMKRQPAHGGLAQALLAAEDRRRPQDTRVLVVLGKAGQGKSLCVRAVT
RAWACGQLPHYDFVFLLPGHGLERLGEACSLRDLLGLAAACPLDSEVFGHIMRQPHRVLF
LLDTLEGLEAQDSLPHGAAGHDWAEPRCPRVLLAGLLQHKLLRGCTVVLTARPRGRLGLS
LAKADALFEVTGFSDEQAQTYVRRYWEQAGKPELQDRALGLLCSHPFLLGQCHSPAVCQS
VCHLLESLLGQTEEAKLPATLTELYVSLLGPVICNGPLGTLDEVAKLAWECGRQHRSSLA
GQVASANVRAWAVASGLLQPIPGSGEDGLAFPSFLLQCFLAALWLSRTNEVKDKLLSQYL
ALTPRKKRPYDNWLEGVPRFLAGLLFQPATPGLRALATPARSRKQKVLSRYLKRLQPGLL
PSGRLLELLHCAHEAQDPGIWQHALHGLPNRLCFLSTRLAPPDVHVLCQALQEAGPDFAL
DVRSTGINPAGLGHLVGLSCVSSFRAALSDTVSLCRSLHRQGHTELLQAVEDKFTIEPLK
VESLKDVEDLSDLVKLQRTPGASGDACQTLPAVQGLRKLEFALGPTQGPQAFPRLVQILE
AFSSLRHLDLDSLSENKIGDDGVVLLLATFPQLQALETLNLSQNSITDVGACKLAEALPT
LAASLLRLSLYNNCICDKGAESLAHVLPEMGNLRELDVQYNKFTASGAQQLAASLKKSPH
IKRMALWTPTIPFGVQEHLQQLDSRISLR
NT seq
3150 nt
NT seq
+upstream
nt +downstream
nt
atggacttgggctcccttgaaggcggatacctggaactgctcaacagcagcgctgacccc
ttgcaactctaccacctctgtgatcatctggacctggctggagacgacattgagacctgt
tcggaacccgacaaggacaccatcagctatgaacagttcaacaggctcttttgtgccatt
gaagatgacgaggagaccagggaggcgtataacagcatcgcggacctggactattacatc
ttccaggattcccagctggatggcctgagcaaagatatgttcatcaagcacataggcctg
gaagagctcccgggagagactgtgggggcaccagaggaagctggtcagaggagtcccaag
agaccctgccccgaggagcccctgcctgcagatgccaagcacagaaggctggtgtctcct
ctctccacttcctctgggacctgcctcagtctacctgctggaccccttcagatcatcccc
actttgccccaggcactctggcaaatctcaagtgacaacacagggctccccagcttactt
atctactcaagtgaaacactccagatgagcaataaactccctgtctgcagccctgctgtc
cagagcctcccagaggccccaggccagccaggtcccaccagcccctttgctccgtctgca
gcagatctcccaagcatgcctgagccagcactgacctcccgggagaacgccgcagaggat
atggtaccccacatctccaacccagaagctcctgagggtgccaccaagctccccaaatgg
cctgagattgtggaacagttccagcaatcgctgcgggacaagtaccaggcagagcccctg
ggctcagaaggcttcctggtggaggtggacctggtacgagcacagctggagagaagcagc
agtaagagccaggagagggagcccgtgatcctggattggatgaagcggcaacctgcccat
ggggggctggcccaggcgctgttggccgctgaggaccggcggcgaccccaagacacacgt
gtgctggtggtgctggggaaagctgggcagggcaaaagcctgtgtgtgcgggccgtgacc
cgcgcctgggcctgtggccagctgccccactacgactttgttttcctcctccctggccac
ggcctggagcggctgggggaagcctgttccctgcgggacctgctgggccttgcagctgcc
tgccctctggacagtgaggtttttggccacatcatgaggcaacctcaccgtgtcctgttt
ctcctggacacactcgaaggccttgaagcccaggacagcctcccgcatggcgcagctggg
cacgactgggcagaaccccgctgcccccgggtgctgctggctggtctcctgcagcacaag
ctacttcgtggctgcaccgtggtgctgaccgcccggcctcgaggccgcctgggtctgagc
ctggccaaggcagatgccctcttcgaggtgactggcttctccgacgagcaggcccagacc
tacgtgagacgctactgggagcaagcaggcaagcctgagctccaggacagggcgctgggc
ctcctctgcagccacccctttctgctgggccagtgccatagccctgctgtttgccagtct
gtgtgccacctgttagagtctctcctggggcagacggaggaagccaagcttccggctacg
ctcactgaactctatgtgagcctgctgggccctgtcatttgcaatggcccgttggggacc
ctggacgaagtggccaagctggcctgggagtgtggccgccagcaccggagcagcctggcg
ggccaggttgcatcggccaacgtgagggcctgggccgtggccagcggcttgttgcagccc
atcccaggctctggagaggatggactcgctttccccagcttcctcctacagtgcttcctg
gccgccctgtggctgtctcggaccaatgaggtcaaggataaactgctatcacaatacttg
gccttgacgcccagaaagaagaggccctatgacaactggctggagggggtcccccgcttc
ctggccgggctgctcttccagcctgcaaccccaggcctgcgtgcattggccacccctgcc
aggagcaggaagcagaaggtgcttagtcgctacctgaagcggctgcagccgggcctcctg
ccctctgggcggctgctggagcttttgcactgtgcccatgaggcgcaggacccgggcatc
tggcaacacgcgctgcatgggctcccgaaccgcctctgcttcctcagcacccgcctggca
ccccccgacgtacatgtgctgtgccaggccctgcaggaggccggccctgactttgccctg
gatgtgcgaagtacgggcatcaaccctgcaggactcgggcacctcgtgggactcagttgt
gtctcctctttcagggctgccttgagtgacacggtcagtctgtgccggtcgctgcacaga
cagggtcacacggagctgctccaagcagtcgaagacaaattcacgatcgagcctctcaag
gttgagtcgctgaaggatgtggaggacctcagtgaccttgtgaaattgcagaggactcca
ggtgcctccggagatgcctgccagactctgccagcagttcaaggcctgaggaagctggag
tttgcgctgggcccaacccaaggcccccaggccttccccagactggtccagatcttggag
gccttctcttcccttcgtcacctggatctggactcgctgagtgagaacaagattggggac
gatggggtggtgctgcttttggccaccttcccccaactacaggcactggagaccctcaac
ctgtcccagaatagcatcacagatgtgggcgcctgcaagctggccgaggccctgcccacc
ctagccgcctctcttctcaggctaagcttgtataataactgtatctgtgacaagggagct
gagagcctggctcatgtgctgcccgagatggggaaccttcgggaactggatgtccagtac
aacaagttcacggcctccggggcgcagcagctggctgccagcctgaagaagagccctcac
atcaagaggatggcgttgtggacacctaccatcccatttggcgtccaggaacacttgcag
cagctggactccaggattagcctgaggtga
DBGET
integrated database retrieval system
