Suncus etruscus (white-toothed pygmy shrew): 126001237
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Entry
126001237 CDS
T09902
Symbol
PARN
Name
(RefSeq) LOW QUALITY PROTEIN: poly(A)-specific ribonuclease PARN
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
setr
Suncus etruscus (white-toothed pygmy shrew)
Pathway
setr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
setr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
126001237 (PARN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
setr03019
]
126001237 (PARN)
Enzymes [BR:
setr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
126001237 (PARN)
Messenger RNA biogenesis [BR:
setr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
126001237 (PARN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
RRM_Thc1
NCBP3
RRM_1
Motif
Other DBs
NCBI-GeneID:
126001237
NCBI-ProteinID:
XP_049624412
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All DBs
Position
2:complement(12515239..12629863)
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AA seq
639 aa
AA seq
DB search
MEIIRSNFKSNLPTVYQAIEEADFFAIDGEFSGISDGPSVTALTNGFDTPEERYQKLKKH
SMDFLLFQFGLCTFKYDHADSKYVTKSFNFYVFPKPFSRSSPDVKFVCQSSSIDFLASQG
FDFNKVFRNGIPYLNQEEERQLREQYDEKRLQSNGAGTLSYVSPNASKCPVTIPEDQKKF
INQVVEKIEGLLQSEENTNLDLEPCTGFQRKLIYQTLSWKYPKGIHVETLETEKKERYIV
ISKVDEEERKRREQLKHAKEQEELNDAVGFSRVVHAIANSGKLVIGHNMLLDVMHTVHQF
YCPLPTDLNEFKEMTTCVFPRLLDTKLMASTQPFKDIINNTSLAELEKRLKEIPFNPPKV
ESAEGFPSYDTASEQLHEAGYDAYITGLCFITMANYLGSFLSPPKIHVSAKSKLIEPFFN
KLFLMRVMDIPYLNLEGPDLQPKRDHVLHVTFPKEWKTSDLYQLFSAFGNIQISWIDDTS
AFVSLSQPDQVQIAVNTSKYAESYRIQTYADYVGKKQDEKAGQRGSGREDGWKEVERKHL
STQCLSYALQNHFYHTNSLTAPGSGGKRNMSPSPTEEDPEASVLGEHSDADPEQTEPCAE
PLSEGRKKAKKLKRMKKDLSPAGSFSDSSTTLFEVPDTW
NT seq
1920 nt
NT seq
+upstream
nt +downstream
nt
atggagatcattcgaagcaattttaagagtaaccttcctacagtgtaccaggccatcgag
gaggcagacttctttgccatcgatggggagttctcaggaataagtgatggaccttcagtc
actgcattaactaatggttttgacactccagaagaaagatatcagaagcttaaaaagcat
tccatggattttttgctgtttcaatttggactttgcacttttaaatatgaccacgctgat
tcaaagtatgtaacaaaatcatttaacttctacgttttcccaaaacccttcagcagatcc
tcaccagatgtcaaatttgtgtgtcagagctcaagcattgactttctggcgagccagggc
tttgattttaacaaagtttttcgcaatggaattccatatttaaatcaggaagaggaaagg
cagttaagggagcagtatgatgagaaacgcttacagtccaatggtgcagggacactctcc
tatgtctctccgaacgcctccaaatgccccgtgacgattcctgaggatcagaagaagttt
attaaccaagtggtagagaaaattgaaggtttattacagagtgaggaaaacacaaacttg
gatttagagccatgtaccgggttccagagaaagctaatctatcagactttgagctggaag
tatcccaaaggcattcatgttgaaactttagaaactgaaaagaaagagaggtacatagtt
atcagcaaagtagatgaagaagagcgcaaaaggagagaacagctgaaacacgccaaagag
caggaggaactgaatgatgctgtgggattttctagagtcgtgcatgccatagctaactcg
ggaaaactggtcattggacacaacatgctcctggacgtgatgcacactgtccatcagttc
tactgcccgttgcccacggacttaaatgagtttaaggagatgacgacatgtgttttcccc
agactcttggatacaaaattgatggccagcacacagccttttaaggatatcatcaacaat
acatcccttgcagaattagaaaagcggttaaaagagatacctttcaaccctcctaaagtt
gaaagtgcagaaggttttccaagctacgacacagcatctgagcagcttcatgaggcgggc
tacgacgcttatatcacaggactgtgctttatcactatggccaactacctaggttctttc
ctcagtcctccaaaaattcatgtgtctgcaaaatcaaagctcatagaacctttttttaac
aagttatttcttatgagagtcatggatatcccctacctaaacttggaaggaccagacttg
cagcctaaacgtgatcatgttctccacgtgaccttccccaaagagtggaaaaccagtgat
ttgtaccagctctttagtgccttcggtaacattcagatctcctggattgatgacacgtca
gcatttgtttctctcagccagcctgaccaagttcagattgctgttaataccagcaaatat
gcagaaagctaccggatccagacctacgctgactacgtgggcaagaagcaggatgagaag
gcaggtcaaagaggaagtggcagagaggacggttggaaggaggttgaacggaagcacctc
agcacgcagtgcttgtcttatgccctgcagaaccacttctaccacaccaacagcctcaca
gcccctggctcaggagggaagaggaacatgagtcccagccccacggaagaggacccagag
gccagcgtccttggcgagcattctgatgctgatcccgaacagacagagccctgtgccgag
cccctctctgagggcaggaagaaagccaagaagttaaagagaatgaagaaggacctctct
cccgcaggaagcttctcggacagctccaccaccctctttgaagtccctgacacgtggtaa
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