Suncus etruscus (white-toothed pygmy shrew): 126001315
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Entry
126001315 CDS
T09902
Symbol
SLX4
Name
(RefSeq) structure-specific endonuclease subunit SLX4
KO
K10484
structure-specific endonuclease subunit SLX4 (BTB/POZ domain-containing protein 12)
Organism
setr
Suncus etruscus (white-toothed pygmy shrew)
Pathway
setr03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
setr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
126001315 (SLX4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
setr04121
]
126001315 (SLX4)
03400 DNA repair and recombination proteins [BR:
setr03400
]
126001315 (SLX4)
Ubiquitin system [BR:
setr04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul3 complex
Adoptor and target recognizing subunit (BTB)
126001315 (SLX4)
DNA repair and recombination proteins [BR:
setr03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
126001315 (SLX4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Slx4
BTB
Glyco_hydro_38N
efb-c
Motif
Other DBs
NCBI-GeneID:
126001315
NCBI-ProteinID:
XP_049624505
LinkDB
All DBs
Position
2:complement(6988786..7000509)
Genome browser
AA seq
1610 aa
AA seq
DB search
MDESDEDFKELCASFFQRVKKTTKDVAGERKAQKAVNGAQPRRKPQRVRQTLSKSTALPE
PIERKCLSSTKGPKRRKPGAAQGSQPTPPENGDASVLASATPLECRNTLTECGPSSEAQP
PPSCPRETNPPKPCAAELVVQRMQQFKRAHPRRLRHTTEEGVSLEATLEDEAPEPPGEEP
TAGPGFELPASEIDDGAVARALQQELGQEREPPPSSSLEETGLFFCQMCQKDLSAMNLVR
REQHLNRCLDEAEKAQRPPVPPVLECPICGKPCLTPKSRISHLKQCAAKMEVSPRLLVQA
VQLQTAQPEGAMAPSTPASSSHVGGLRRKGPPNKEPRKRQKVGHEPPSEDLLVAMALSLS
EMEQETTPAALRLGGTKLGAALEKRGRRKRGPMSPPQLLVQDPETTGRQFEDRVAQLLSE
EPVVASTPSLPASRILETLGTASWCLQKQAGMPNFLWEGSALCQGWPPAAFYSTHLGPSL
RPKPVWAAPQKPALPGPQSPCPTETPSPSASQREQQALQDLVELAREGMNSSQWPCSGGS
GRATGEHWEPDCLPLTGFVPPSKEQHPGQDGGASSLRQATLDRLLADFRAMVNNPHLSDV
QFQLDSGDLLYAHQFVLYARCPLLMQFVNSEGFLAMEDDNLRVQRVLLSDTSTEAARVFL
HYLYTADTSLVPELATDLSSLAHRFGIPELVHLCQQALAVAGTKIGQQEEQEGSVGPAES
FQELLRSVWKGEAEETEETAKEACEEDGEKVNDADIDEIYEFVATQRKMLRDEAGVETEE
REPIEEENLGQVLLPEPSAGPLGMESPERAGREAPKEEAGPCSPSSPVGGCKAMGEEQPF
PSPGDPGVPKTWSEQKVERSKAWNNPHQQTPAVYPCLLPSQSPPHTHSGDSSTPVPLAQE
DASMAHTQNSPSWKKRHRGVSTQPKEPVREKGRQQSYSWECMNKGAPVSPEPSPSIDLTQ
SKPSPGGSRPGMAPLGGSRSDEVILLLDSDEEWELEQNQHKAEGRSVLEDSSKSCELFPI
IDVDSDPEDLRSPAAGEADGASPPLFQDPDEADITESSWLVPATPLASRSQDCTLHTRLS
GQPVGESDRPKATKLSPVRPNPVTPGSSNSRGRRRRIFDNPLPHCHQHCSPVAPPPDSGG
LPSLSPHFQSPIRSAPGDATASEVVEVEDSEDEQEMASRQAHSSPLADGDSPIPSDCCWH
VEPLSPIPIDHLNLECSGPLSTSSPGGRAREAGPSGAEHSPAPLSTTPIRGSCPGPRGSW
ARHARPGSPGSSRPSFLNSSLWDSWDGEEQRSAELPVLARTPTRTSGRFETPKGANQKLP
PKVPITPMPRYSIMETPVLKKELDRFGVRPLPKRQMVLKLKEIFQYTHQTLESDSDDSCQ
ALCGQACTTTASEASRAAGCAQPDATTGLVPQMSKDPAKTKGPQSLRQQQREDFAAEGIP
GVPDDDIQLSASQESTAASVASSDTFSSHSSSGEFGTAFESVEEDKEGVSASQVAMQTTA
MEEAVSRFICSQPALYRKVLQYQPLELAVLQAELKQQGIQVATGRLMDFLDAHCITFTTA
AARKEKARQKGQQPGVKKKGRKPGRPRAPSSPVASSSQRPMLPVGSQHPT
NT seq
4833 nt
NT seq
+upstream
nt +downstream
nt
atggatgagtcagatgaggacttcaaggagctgtgtgccagttttttccaaagggtgaaa
aagaccaccaaggatgtggctggggaaaggaaggcacagaaggcggtgaatggcgcccag
ccgagacgcaaaccacagagggtcagacagactctgagcaagagcacagcccttccagag
cccatcgagaggaagtgtctgtccagcaccaaaggccccaagaggagaaaaccaggcgca
gcacagggaagccaaccaactccaccagagaatggggatgcaagtgtgcttgcttccgcc
acacccctggagtgcaggaacaccttgacagagtgtggccccagcagtgaggcccagccc
cctccttcatgtccacgggaaacaaatccccccaaaccctgtgcagccgagctggtcgta
cagcgcatgcagcagttcaagagagcgcaccccaggcgtctgagacacaccactgaggag
ggggtctccctggaggccacccttgaagatgaggccccagaaccacccggagaggagccc
acggcagggcccggctttgagctccctgcctcagaaatcgatgatggtgcagtggccagg
gctctgcagcaggagctggggcaggaacgagagcctccccccagcagcagcctggaggag
actggactgtttttctgccagatgtgccagaaggacctgtctgccatgaacctggtacgc
cgggagcagcacttgaacaggtgcctggatgaagctgaaaaggctcagagacctccggtg
cccccagtcctggaatgtccaatctgtggcaaaccctgtcttactcccaagagccggatc
agccacttgaagcagtgtgccgcgaagatggaggtcagccctcggctcctggtgcaggct
gtgcagttgcagacagcccagcccgagggtgccatggccccaagcaccccagcctccagc
agtcatgtgggaggtctgaggaggaagggaccccccaacaaggagccacgcaagcggcag
aaagtcggacatgagcccccatctgaggatttgctggtggccatggcactatccctctct
gagatggagcaggagaccacacctgccgccctcagactgggtggcacaaaactgggagca
gccctagagaagaggggccgcaggaagagaggccccatgtccccacctcagctgctggta
caggacccggaaaccaccggccgccagttcgaggaccgagtggcccagctactgtcagag
gagcctgtggtagccagcaccccctcattgcccgccagcaggattctggagacgctgggc
actgccagctggtgtctgcagaagcaggcagggatgcctaacttcctgtgggagggcagt
gccctctgccagggctggcctcccgccgccttctactccacccaccttggcccatccctc
aggcccaaacctgtctgggctgcccctcagaagcctgcactgccagggccccagagcccc
tgccctacagagaccccgtccccatcagccagccagagggaacagcaggccctgcaggac
ctcgtggaactggcaagagaagggatgaacagcagccagtggccctgcagtgggggctca
ggaagggccacaggggagcactgggagcctgactgccttccactgaccgggtttgtacca
ccctccaaggaacagcacccaggccaggatggtggagcttcttcgctaagacaggccact
ctggacaggctgctggctgatttccgggccatggtcaacaacccccacctgagcgatgtg
cagttccagctggacagcggggacctgctctatgcccaccagttcgtgctctatgcccgc
tgcccgcttctcatgcagtttgtaaacagcgaaggcttcctggccatggaggatgacaat
ctgagagtccagcgtgtgctgctgagcgacaccagcacagaggccgcccgagttttcctg
cactacctctataccgcagacaccagccttgttcctgagctggccactgacctgagctcc
ctggcacacaggtttggcatccctgagctggtgcacctgtgccaacaagcccttgctgtg
gctggcaccaagattgggcagcaggaggagcaggagggcagcgttggcccagctgagagc
ttccaggagctgctgaggtctgtgtggaagggggaggcggaagagaccgaggaaacagcg
aaggaagcatgtgaggaagacggagagaaagtgaacgatgcggacatagatgagatctat
gaattcgtagctacccagcggaagatgctccgggatgaagccggtgtggaaacagaggag
agggagccgattgaggaggagaacctgggccaggtcctgcttccagagccctcagcaggc
cccctggggatggagtcacctgagagagcaggcagggaggccccaaaggaagaagccggc
ccctgcagtccctcgagccctgtgggagggtgcaaggccatgggtgaggagcagcccttt
ccttcgccaggggaccctggagtacccaagacttggagtgagcagaaagtggagcgcagc
aaagcctggaacaatcctcaccagcagacacccgcagtgtacccctgcctcctcccatca
cagtccccacctcacacacactcaggggactcgtccacccctgtacccttggcacaagaa
gacgcttccatggcgcacacccagaactcaccgtcctggaagaagaggcacagaggggtc
tctacccagcctaaagagccagtgcgtgagaaaggtcggcagcaaagctattcttgggag
tgcatgaataagggggctccggtttccccagaaccgtcgccctccatcgacttgacccag
tcgaagcccagccctgggggcagcaggccagggatggctccattgggtgggagcagaagt
gacgaggtgatccttctgttggactcagatgaagagtgggagctagagcaaaaccaacac
aaggcagaaggaaggagtgttctagaagacagctccaaatcctgcgaattgttccccatc
atcgatgtggactctgatccagaagacctcaggagcccagctgctggggaggcagatgga
gcaagcccaccgctcttccaggaccccgatgaggctgacatcacagagtcctcgtggctg
gtgcctgccaccccactggccagcaggagccaggattgcaccttacacactcggttgtct
gggcaaccagtaggagaaagtgacaggcccaaggccacgaagttgtcaccagtacgtcca
aacccagtgaccccaggaagctccaatagcagagggcggcgccgcagaatttttgacaat
ccccttccccactgccaccaacactgctccccagtggctccccctcccgattcggggggc
ctccccagtctttccccgcacttccagtcccccatacgtagcgctccaggtgatgccaca
gccagtgaagtagtggaagtggaagacagtgaggatgagcaggagatggcttcccgccag
gcccacagcagccctctggccgacggtgactcccccatcccatctgactgctgctggcat
gtggagcccctctcgccaatccccatcgaccacctaaacttggaatgctcaggacccctg
agcaccagcagccctggtggcagggctagggaggccgggcccagtggtgctgagcactcg
ccagccccactcagtaccactccaatccggggcagttgccctggccccaggggttcttgg
gcgagacatgccaggcccggctccccagggagcagcaggccgagctttctgaactcctct
ctgtgggacagctgggatggcgaagagcagaggtctgcagagctcccggtgctggccagg
accccgactcggacgtctggacgtttcgagacaccaaaaggtgctaatcagaagttgccc
ccaaaggtgcccataacacccatgccaaggtattccatcatggagaccccagtactgaag
aaggagctggacaggttcggggttcgccctttgcccaagcgccagatggtcctaaagttg
aaggagattttccagtacacacaccagacgctcgagtcggactcagatgatagctgccag
gcactgtgtggccaggcctgcaccaccacggcctctgaggcctccagggcagctggctgt
gcccagccagatgccaccacagggcttgtcccccaaatgtccaaggaccctgctaagacc
aaaggcccccaaagtctgaggcagcagcagagggaagactttgctgcagaggggatacct
ggagtccctgatgatgacatccagctctctgcctcacaggagtccacagctgcttccgta
gccagcagcgacaccttcagctcccacagttcctctggggagtttggcacagcctttgag
tccgtggaagaggataaggagggcgtcagtgcttctcaggtggccatgcagacaacagcc
atggaggaggctgtgagccgcttcatctgctcccagccagccctctaccgcaaagtgctg
cagtaccaaccactggagttggcagtgctgcaggccgagctcaagcagcagggcatccag
gtggccacaggaaggctgatggacttcctggatgcccactgtatcaccttcaccacggct
gcggcccgcaaggaaaaggccaggcagaaggggcagcagcctggggtcaagaagaagggg
cgaaaacctggcaggccccgggccccttcctcacctgtcgcctccagcagccagaggcct
atgctccctgtgggatcacaacaccctacctga
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