Suncus etruscus (white-toothed pygmy shrew): 126001891
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Entry
126001891 CDS
T09902
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm2
KO
K12621
U6 snRNA-associated Sm-like protein LSm2
Organism
setr
Suncus etruscus (white-toothed pygmy shrew)
Pathway
setr03018
RNA degradation
setr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
setr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
126001891
09123 Folding, sorting and degradation
03018 RNA degradation
126001891
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
setr03019
]
126001891
03041 Spliceosome [BR:
setr03041
]
126001891
Messenger RNA biogenesis [BR:
setr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
126001891
mRNA degradation factors
5'-3' decay
Lsm complex
126001891
Spliceosome [BR:
setr03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
126001891
Complex C
U2 snRNP components
126001891
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Lysis_col
Motif
Other DBs
NCBI-GeneID:
126001891
NCBI-ProteinID:
XP_049625048
LinkDB
All DBs
Position
2:144109021..144112570
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AA seq
166 aa
AA seq
DB search
MGLQSDCLQSWITLDIGKSGSVLRSFLKKRKEDQIDFGIIINYMKFGAKKSESKNVCIKN
KARDRQGGTRAPCSSVPFFKSLVGKDMVMELKNELSICGTLHSIDQYLNIKLTDISVTDL
EKYPHMLLVKNCFIQGLVVRYVPLPADEVDTQLLQDAAKEVLQQKQ
NT seq
501 nt
NT seq
+upstream
nt +downstream
nt
atgggcttacaaagtgattgcctacaatcatggattactttagatattggaaaatctggg
tcagtactacgatcttttctaaagaagcgaaaagaagatcaaattgattttggaatcata
ataaactatatgaaatttggagctaagaaatctgaaagtaaaaatgtatgtattaagaat
aaggctcgggaccggcaaggtggcactagagcaccatgctcttctgttccgtttttcaag
tctcttgtgggcaaggacatggtgatggaactgaagaatgaactgagcatctgtggaact
ctccattctatagaccagtatctcaacatcaaactaactgacatcagtgtcacagatctt
gagaaatacccccacatgttattggtgaagaactgctttatccagggcttggtggtccgg
tatgtgccattgccagcggatgaggttgacacacagttgctacaagatgcagcaaaggag
gtgctgcagcagaaacagtga
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