Suncus etruscus (white-toothed pygmy shrew): 126001921
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Entry
126001921 CDS
T09902
Symbol
CHD1
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 1
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
setr
Suncus etruscus (white-toothed pygmy shrew)
Brite
KEGG Orthology (KO) [BR:
setr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
setr03021
]
126001921 (CHD1)
03036 Chromosome and associated proteins [BR:
setr03036
]
126001921 (CHD1)
Transcription machinery [BR:
setr03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
126001921 (CHD1)
Chromosome and associated proteins [BR:
setr03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
126001921 (CHD1)
SLIK complex
126001921 (CHD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD1_Hrp3
CDH1_2_SANT_HL1
CHD1-like_C
Chromo
Helicase_C
DEAD
Motif
Other DBs
NCBI-GeneID:
126001921
NCBI-ProteinID:
XP_049625065
LinkDB
All DBs
Position
2:complement(155020809..155114271)
Genome browser
AA seq
1803 aa
AA seq
DB search
MNGHSDEESARNSSGESSQSDDDSGSASCSGSASSSASSSDGSSSRSGSSDSDSGSESGS
PSESESESDTSRENKVQAKPPRVDGAEFWKSSPSILAVQRSAMLKKQQQQQQQQQQQQTS
SNSASEEDSSSSEDSDDSSNEVKRKKHKDEDWQMSGSGSPSQSGSDSGSEEEGEKSSCDE
TESDYEPKNKVKSRKPQNRLKSKNGKKLLGQKKRQLDSSEEEDDDEDYDNDKRSSRRQAT
VNVSYKEDEEMKTDSDDLLEVCGEDVPQPEEEEFETIERFMDCRIGRKGATGATTTIYAV
EADGDPNAGFEKNKEQGETQYLIKWKGWSHIHNTWETEETLKQQNVRGMKKLDNYKKKDQ
ETKRWLKNASPEDVEYYNCQQELTDDLHKQYQIVERIIAHSNQKSAAGYPDYYCKWQGLP
YSECSWEDGALISKKFQPCIDEYFSRNQSKTTPFKDCKVLKQRPRFVALKKQPSYIGGHE
GLELRDYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVV
PLSTLTSWQREIQTWASQMNAVVYLGDINSRNMIRTHEWMHPQTKRLKFNILLTTYEILL
KDKAFLGGLNWAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLL
HFIMPEKFSSWEDFEEEHGKGREYGYASLHKELEPFLLRRVKKDVEKSLPAKVEQILRME
MSALQKQYYKWILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYLIKPPDNNEFYNKQ
EALQHLIRSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGS
IKGELRKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQAR
AHRIGQKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQRMDTTGKTVLHTGSAPSSS
TPFNKEELSAILKFGAEELFKEPEGEEQEPQEMDIDEILKRAETHENEPGPLTVGDELLS
QFKVANFSNMDEDDIDLEPERNSKNWEEIIPEDQRRRLEEEERQKELEEIYMLPRMRNCA
KQISFNGSEGRRSRSRRYSGSDSDSVSERKRPKKRGRPRTIPRENIKGFSDAEIRRFIKS
YKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHTGCIKALKDTSSGTERTGGRLGKV
KGPTFRISGVQVNAKLVISHEEELIPLHKSIPSDPEERKQYTIPCHTKAAHFDIDWGKED
DSNLLIGIYEYGYGSWEMIKMDPDLSLTHKILPDDPDKKPQAKQLQTRADYLIKLLSKDL
AKKEAQRLSGAGGSKRRKARAKKNKAMKSIKVKEEIKSDSSPPPSEKSDEDDDKDEITSV
KHPNKKIKTERDSEERPEPDVCIKKEPEEKREAKEKENKRELKREIKEKEDKKDLKEKDF
KEKRENKIKEAMQKEKDIKEEKLSESKSESKEKSKKLSVLDAPVHITASGEPVPISEESE
ELDQKTFSICKERMRPVKAALKQLDRPEKGLSEREQLEHTRQCLIKIGDHITECLKEYAN
PDQIKQWRKNLWIFVSKFTEFDARKLHKLYKHAIKKRQESQQNNDQNSNLNAHVIRNPDL
ERLKENTNHDDSSRDSYSSDRHLSQYHDYHKDRHPGDSYKKNDSRKRPYSSFSNGKDHRD
WDHYKQDNRYYGDREKHRKLDDHRSRDHRSNLEGSLKDRSHSDHRSHSDHRSHSDHRSGS
EYSHHKSSRDYRYHSDRQMDHRAASSGPRSPLDQRSPYGSRSPFEHSVEHKSTPEHAWSS
RKT
NT seq
5412 nt
NT seq
+upstream
nt +downstream
nt
atgaatggacacagcgatgaagaaagtgccaggaacagtagtggagaatccagccagtcg
gatgatgattccgggtcagcttcatgctctgggtctgcgtcgagttctgcaagcagcagt
gatgggagcagcagccggtccgggagcagcgactctgactcaggctcggagtctggcagc
ccttcggagtcggagtcggagtcggacacatctcgggagaacaaagtccaagccaagccc
cccagagttgatggagctgagttttggaagtctagccccagtattctggctgttcagaga
tctgcaatgctcaagaagcaacagcagcagcagcagcagcagcaacagcaacaaacttca
tcaaatagcgcatcagaagaggactcttctagcagtgaagattctgatgactcatcaaat
gaggttaaaaggaaaaaacataaagatgaagactggcagatgtctgggtctgggtctcca
tcacagtctggctcagattctggatctgaagaagaaggagaaaaaagcagctgtgatgag
acagaatctgattatgagccaaaaaacaaagttaaaagcagaaaacctcaaaacagattg
aagtcaaaaaatgggaaaaaacttcttggtcaaaaaaagagacaacttgattcgtctgag
gaagaggatgacgatgaagattatgataatgataaaagaagttctcgccgccaagcaaca
gtcaatgttagctataaggaagatgaggagatgaaaacagattctgatgacctcctggaa
gtttgtggcgaggatgtccctcaacctgaggaagaagagtttgagaccatagaaaggttc
atggattgtcggattggaaggaaaggagctactggtgctactacaaccatctatgcagtt
gaagcagatggtgacccaaatgcaggatttgaaaaaaataaagaacaaggagagactcag
tatctaattaagtggaaaggatggtcccatattcataatacttgggagacagaagaaact
cttaagcagcagaatgtcagaggaatgaagaaactggataattataagaaaaaagatcag
gaaacaaaaagatggttgaaaaatgcttctccagaagatgtggaatactataattgtcag
caggaactgacagatgatctacataagcaatatcaaatagtggagcggataattgctcat
tccaatcaaaaatcagcagctggttatcctgattattattgcaaatggcagggacttcca
tattcagagtgcagctgggaggatggagctctcatttccaaaaagtttcagccctgcatc
gatgagtattttagcaggaatcaatcaaaaaccactccttttaaagattgtaaagtgtta
aaacaaaggccaagatttgtagccctgaagaaacagccatcttatattggagggcatgaa
ggtttagaattaagagattatcagctaaatggcttaaattggcttgctcactcttggtgc
aagggaaatagttgcatacttgctgatgaaatgggccttgggaaaacaatacagaccatc
tcattcctgaactatttgtttcatgaacatcagttatatggacctttcctattagtggtt
ccactttccactctcacttcttggcaacgggaaattcagacctgggcttctcaaatgaat
gctgttgtttatctaggtgatattaacagcagaaacatgataagaactcatgaatggatg
catccccagaccaaaaggttaaaattcaatatcttgttaacaacttatgaaattttattg
aaggataaggcattccttggaggtctcaactgggcatttataggtgttgatgaagcacac
cgattaaagaatgacgactctcttctgtataaaaccttaatagacttcaagtccaatcac
cgtctcctcatcactggaacacctttgcagaactcccttaaagagctctggtctttgctc
catttcatcatgccagaaaagttttcttcctgggaagattttgaggaagagcatggcaaa
ggtagagaatatggctatgcaagcctccacaaagaactggagccatttctgttacgcaga
gttaagaaagatgtggagaaatctcttcctgccaaggtggaacagattttaagaatggaa
atgagtgctttacagaaacaatattacaaatggatattaactaggaattacaaagccctc
agcaaaggctccaagggcagtacctcaggctttttgaacattatgatggagctaaagaaa
tgttgtaaccattgctacctcattaaaccaccggataataatgaattctataacaagcag
gaggccttacaacacttaatccgtagtagtggaaaattaattcttcttgacaagctgtta
attcgcctaagagaacgaggaaaccgagttcttattttttctcaaatggtgcggatgtta
gatattcttgcagaatatttgaaatatcgtcagttcccctttcagagattagatggatca
ataaaaggggagctgcggaaacaagctctagatcattttaatgctgaaggatcagaggat
ttctgctttttactttccacaagagctggaggtctagggattaatttagcatctgctgat
actgttgttatattcgattctgattggaatccacaaaatgatcttcaggcacaggctcga
gctcatcgaattggacaaaagaaacaggtgaatatttatcgtctggttacaaagggatca
gttgaagaggatattctcgaaagggccaaaaagaagatggttttagatcatcttgtaatt
caaagaatggacacaacggggaagacagtgctacacacaggttctgccccctcaagttct
actcctttcaataaagaagaattgtcagccattttgaagtttggtgcagaagaactattt
aaggaacctgaaggagaagaacaggagccccaggaaatggacatagatgaaatcttaaag
agggcagagacgcatgaaaatgaaccaggtcctttaactgtgggtgatgaactgctctct
cagttcaaggttgccaacttttcaaatatggatgaggatgacattgacttggaacctgaa
agaaattcaaagaattgggaggaaatcattccagaagatcaaagaagacgtttagaagag
gaagaaagacaaaaagagcttgaagaaatttatatgctcccaagaatgaggaactgtgca
aaacagattagttttaatggtagtgaaggaaggcggagcagaagcaggagatattcggga
tctgatagtgattctgtctccgaaaggaagaggccaaagaaacgtggacgaccacggaca
attcctcgggaaaacattaaaggatttagtgatgcagaaattcggcggttcatcaagagt
tacaagaaatttggtggccctctggaaagattagatgcaattgctcgagatgctgagtta
gttgataaatcagagacagacctcagacgactaggagaattagtacatactggttgcatc
aaagctttaaaggatacttcttcaggaacagaacgaacaggtggtagacttggaaaagtg
aagggtccaacatttcgaatatcaggagttcaggtgaatgccaagctagtcatttcccat
gaagaagaattaataccactacacaaatccattccttcagatccagaagaaagaaagcag
tatactataccatgccacacaaaagcagctcattttgatatagactggggcaaagaagat
gattccaacttgttgattggtatctatgaatatggatatggaagctgggaaatgattaaa
atggatcctgatctcagtttaacacacaagattcttccagatgatcctgataaaaagcca
caagcaaagcaattgcagacacgtgcagactacctcatcaaattacttagtaaagatctt
gcaaaaaaagaagctcagagactttctggtgcaggaggatcaaagagaaggaaagcaaga
gctaagaagaataaagcgatgaaatctataaaagtaaaagaagaaataaagagtgattct
tctcctccaccctcagaaaagtctgatgaagatgatgataaagatgagatcacttctgtg
aaacatccaaataaaaaaattaaaacagaaagagacagtgaagaaagacctgagccagat
gtttgtataaagaaggaaccagaagaaaagagggaagcaaaagaaaaagagaataaaaga
gaacttaaaagggagataaaagaaaaagaggataagaaagatttaaaagaaaaagatttt
aaagaaaaaagagaaaacaaaattaaagaagctatgcagaaagaaaaagacataaaggaa
gaaaagttgagtgaatccaagtctgagagcaaggaaaaatctaagaaattatctgtgttg
gatgctccagttcatatcactgcgagtggtgaaccagttcccatatctgaagaatctgaa
gagctggaccagaagacattcagcatttgtaaggaaagaatgagacctgtcaaagcagcc
ttgaagcaacttgataggcctgagaaaggcctttcagaaagagagcagctggagcacact
agacaatgcctgataaagattggtgaccatatcacagagtgtctgaaagagtatgcaaat
cctgaccagattaagcagtggagaaaaaacctgtggatctttgtttctaaatttactgag
tttgatgcaagaaaactacataagttatataaacatgctattaaaaagcggcaggaatct
cagcaaaataatgaccagaacagcaatttgaatgctcatgtgattagaaacccagatttg
gaaagattaaaggaaaacacaaatcatgatgatagcagcagggacagttactcatccgac
cgacatttatcccagtatcatgattatcataaagatcggcatccaggcgattcttacaaa
aagaatgactctaggaaacgaccttactcgtcttttagtaacgggaaagatcatcgtgat
tgggaccattataagcaagataacagatattatggtgatagagaaaaacacagaaaactg
gatgaccatagaagtagagatcaccggtcgaatttggaaggaagtttgaaagatagatct
cactctgatcaccgatctcattctgatcatcgttcacattcagatcatagatcgggctct
gaatactcgcaccataagtcatccagggattataggtatcactcggatcggcaaatggac
cacagagctgcgagtagtggcccgagatctccgcttgatcagaggtctccttatggctcc
agatctccgtttgaacattcagtcgaacacaaaagtacgcccgagcatgcctggagtagt
cggaaaacataa
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integrated database retrieval system
