Suncus etruscus (white-toothed pygmy shrew): 126002056
Help
Entry
126002056 CDS
T09902
Symbol
TRIP12
Name
(RefSeq) E3 ubiquitin-protein ligase TRIP12 isoform X1
KO
K10590
E3 ubiquitin-protein ligase TRIP12 [EC:
2.3.2.26
]
Organism
setr
Suncus etruscus (white-toothed pygmy shrew)
Pathway
setr04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
setr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
126002056 (TRIP12)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
setr04121
]
126002056 (TRIP12)
Enzymes [BR:
setr01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
126002056 (TRIP12)
Ubiquitin system [BR:
setr04121
]
Ubiquitin ligases (E3)
HECT type E3
126002056 (TRIP12)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
WWE
UNC45-central
HEAT_2
HEAT_Maestro
Motif
Other DBs
NCBI-GeneID:
126002056
NCBI-ProteinID:
XP_049625237
LinkDB
All DBs
Position
2:20783860..20899828
Genome browser
AA seq
2068 aa
AA seq
DB search
MSNRPNNNPGGSLRRSQRNTAGAQPQDDSIGGRSHLGQAKHKGYSPPESRKSNSKAPKVQ
SNTTTELSRGHLSKRSCSSSSAVIVPQSEDPDRANTSERQKTGQVPKKDNSRGVKRSASP
DYNRTNSPSSAKKPKALQHTESSSETNKPHNKSKKRHLEQEQQLRSAQLPSTSKAHTRKS
GAAGSSRNQKRKRTESSCIKSGSVSESTGAEEKPAKPTKLASKSAASAKAGCSTITDSSS
TASTSSSSSTVASASSTVPPGARVKQGKDQNKARRSRSASSPSPRRSSREKEQNKTGGSS
KFDWAARFSPKVSLPKTKLSLPGSSKSETSKPGPSGLQAKLASLRKSTKKRSESPPAELP
SLRRSTRQKTTGSCASASRRGSGLGKRGTAEARRQEKMADPESNQETVNPSAARTDETPQ
GAAASSSVAGAVGMTTSGESESDDSEMGRLQALLEARGLPPHLFGPLGPRMSQLFHRTIG
SGASSKAQQLLQGLQASDESQQLQAVIEMCQLLVMGNEETLGGFPVKSVVPALITLLQME
HNFDIMNHACRALTYMMEALPRSSAVVVDAIPVFLEKLQVIQCIDVAEQALTALEMLSRR
HSKAILQAGGLADCLLYLEFFSINAQRNALAIAANCCQSITPDEFHFVADSLPLLTQRLT
HQDKKSVESTCLCFARLVDNFQHEENLLQQVASKDLLTNVQQLLVVTPPILSSGMFIMVV
RMFSLMCSNCPTLAVQLMKQNIAETLHFLLCGASNGSCQEQIDLVPRSPQELYELTSLIC
ELMPCLPKEGIFAVDTMLKKGNAQNTDGAIWQWRDDRGLWHPYNRIDSRIIEVAAHQVGE
DEISLSTLGRVYTIDFNSMQQINEDTGTARAIQRKPNPLANTNTSGYSELKKDDARAQLM
KEDPELAKSFIKTLFGVLYEVYSSSAGPAVRHKCLRAILRIIYFADAELLKDVLKNHAVS
SHIASMLSSQDLKIVVGALQMAEILMQKLPDIFSVYFRREGVMHQVKHLAESESLLTSPP
KSCTNGSGSLGSTTSVSSGTATAASNATADLGSPSLQHSRDDSLDLSPQGRLSDVLKRKR
LPKRGPRRPKYSPPRDDDKVDNQAKSPTTTQSPKSSFLASLNPKTWGRLSAQSNSNNIEP
ARTAGVSGLARAASKDTISNNREKIKGWIKEQAHKFVERYFSSENMDGSNPALNVLQRLC
AATEQLNLQVDGGAECLVEIRSIVSESDVSSFEIQHSGFVKQLLLYLTSKSEKDAVSREI
RLKRFLHVFFSSPLPGEEPIGRVEPVGNAPLLALVHKMNNCLSQMEQFPVKVHDFPSGNG
TGGSFSLNRGSQALKFFNTHQLKCQLQRHPDCANVKQWKGGPVKIDPLALVQAIERYLVV
RGYGRVREDDEDSDDDGSDEEIDESLAAQFLNSGNVRHRLQFYIGEHLLPYNMTVYQAVR
QFSIQAEDERESTDDESNPLGRAGIWTKTHTIWYKPVREDEESNKDCVGGKRGRAQTAPT
KTSPRNAKKHDELWHDGVCPSVSNPLEVYLIPTPPENITFEDPSLDVILLLRVLHAISRY
WYYLYDNAVCKEIIPTNEFINSKLTAKANRQLQDPLVIMTGNIPTWLTELGKTCPFFFPF
DTRQMLFYVTAFDRDRAMQRLLDTNPEINQSDSQDSRVAPRLDRKKRTVNREELLKQAES
VMQDLGSSRAMLEIQYENEVGTGLGPTLEFYALVSQELQRADLGLWRGEEVTISNPKGSQ
EGTKYIQNLQGLFALPFGRTAKPAHIAKVKMKFRFLGKLMAKAIMDFRLVDLPLGLPFYK
WMLRQETSLTSHDLFDIDPVVARSVYHLEDIVRQKKRLEQDKSQTKESLQYALETLTMNG
CSVEDLGLDFTLPGFPNIELKKGGKDTPVTIHNLEEYLRLVIFWALNEGVSRQFDSFRDG
FESVFPLSHLQYFYPEELDQLLCGSKADTWDAKTLMECCRPDHGYTHDSRAVKFLFEILS
SFDNEQQRLFLQFVTGSPRLPVGGFRSLNPPLTIVRKTFESTENPDDFLPSVMTCVNYLK
LPDYSSIEIMREKLLIAAREGQQSFHLS
NT seq
6207 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaccggcctaataacaatccaggggggtcactgcgacgttcacagaggaacacc
gccggggcccagccacaagacgactcaataggaggaaggtcacatttagggcaggcaaaa
cataagggatatagccctcctgagagtagaaaatctaattctaaggcacccaaagtgcag
tctaatactactactgaactgtcaaggggacacctttctaaaagaagctgcagttcatca
tctgctgttatagttccacaatcagaggatccagacagagcaaatacttcagaaagacaa
aaaacggggcaggtgcctaagaaagacaattctcgaggagtgaaacgcagtgctagtccc
gactacaacaggaccaattctcctagctctgctaaaaaacccaaagcacttcagcatact
gaatcttcgtcagaaacaaataagccacataataagtcaaagaagagacatttagaacaa
gagcaacaactgagatctgcacaattgccatcaactagcaaggctcatactaggaagagt
ggggctgctggtagttcacgaaaccagaaaagaaagaggacagagagttcttgtataaag
agtggttctgtgtctgaatcaactggtgctgaagagaaacctgcaaaacctaccaagctg
gcttcaaaatcagccgcctcagccaaagctgggtgtagcaccatcactgattcttcttct
actgcctctacttcctcttcatcttctactgtagcctcggcctcctcaaccgtaccacca
ggtgccagggtgaagcaaggaaaagaccagaacaaagccaggcgttcacgttcagcgtct
agtcccagtcctagaagaagtagcagggaaaaggaacagaataaaactggtggctcatca
aagtttgattgggctgctcgtttcagccctaaagttagccttcctaaaacaaaactgtct
cttccagggtcttctaagtcagagacatcaaaacctggaccttctggattacaggccaaa
ttagcaagtttaagaaaatctaccaagaagcgcagtgaatccccacctgctgagctcccc
agtttgaggcggagcacacgccaaaagaccacgggctcctgtgctagtgccagtcggcga
ggctctggcctgggcaaaagaggaacagcggaagctcgtcgacaggagaaaatggcagac
cctgagagtaaccaggagacagtaaatccttcagctgcacggactgatgaaactccccaa
ggggctgcagcttccagttctgttgcaggggctgtaggcatgactacctctggggaaagt
gaatcagatgattcggagatgggacgattacaagcattgttagaagccagaggccttcca
cctcacctgtttggtcctcttggtcctcggatgtcacagcttttccatagaacaattgga
agtggagctagttctaaggcccagcaacttctacagggactgcaagccagtgacgaaagt
cagcagctccaggccgtgattgaaatgtgccagttactggtcatgggcaatgaagagaca
ctgggagggtttcctgtcaaaagtgttgttccagctttgataacattactacagatggag
cataattttgatattatgaatcatgcctgtcgagccttaacatacatgatggaagcactt
cctcgctcatctgctgttgtagtagatgcaattcctgtctttttggaaaagctgcaagtg
attcagtgcattgatgtggcagagcaggccttgactgccttggagatgttatcgaggaga
cacagtaaagccattctgcaggcgggtggtttggcagactgcctactctatctggagttc
tttagcatcaatgcccaaagaaatgcactagcaattgcagccaattgctgccagagtatc
acaccagatgaatttcattttgtggcagattccctcccattgcttacccaaaggctaacc
catcaggacaaaaaatctgtggaaagcacttgcctttgttttgcacgtctagtggacaac
ttccaacatgaagaaaatttactccagcaggttgcctccaaagatctgcttacaaatgtt
caacaactattggtagtgactccgccaattttaagttctggaatgtttataatggtggtt
cgcatgttttctctcatgtgttccaactgtccaactttagccgttcaacttatgaagcaa
aacattgcagaaacacttcacttcctcctatgtggtgcctccaatggaagttgtcaggaa
cagattgatcttgttccacgaagtcctcaagaactgtatgaattgacatctctgatttgc
gaacttatgccatgtttacccaaggaaggaatttttgctgttgatactatgctgaaaaag
ggaaatgcacagaacacagatggagcaatatggcagtggcgtgatgaccggggtctctgg
catccttataataggattgacagccggatcattgaggtagcagcccatcaggtcggtgag
gatgagataagcttgtccactctgggacgagtttatactattgattttaattctatgcag
caaatcaatgaggacacgggaacagcacgtgccattcagagaaaacctaaccccttagcc
aatactaacactagtggatattcagagttaaagaaggatgatgctcgagcacagcttatg
aaagaggatccggaactggctaagtctttcattaagacattgtttggtgttctttatgaa
gtgtatagttcctcagcaggacctgcggtcagacataagtgccttagagcaattcttagg
ataatttattttgcggatgctgaacttctgaaggatgtcctgaaaaatcatgctgtttca
agtcacattgcctccatgctatcaagccaggacttgaagatagtagttggagcacttcag
atggcagaaatcttaatgcagaagttacctgatatttttagtgtttacttcagaagagaa
ggtgtaatgcatcaagtaaaacacttagcagaatcggagtctttgttgacaagtccacca
aagtcatgtacaaatgggtcaggatccttggggtccacaacatctgtcagcagtggaaca
gccaccgctgccagtaatgccacagcggatttgggatcccccagcttgcagcacagcaga
gatgattctttagatctgagccctcaaggtcgattaagtgatgttctaaaaagaaaacga
ctgccaaaacgggggccaagaaggccaaagtattcacctccaagagatgatgacaaagta
gacaatcaagctaaaagccctactactactcagtcaccgaaatcttctttcctagcaagc
ttgaatccaaaaacatggggaaggttaagtgcacagtccaacagcaacaacattgaacca
gcacgaactgcaggagtcagtggtcttgccagggctgcctcaaaggacaccatatccaat
aatagggaaaaaattaaaggttggataaaggaacaagcgcataaatttgtagagcgttat
ttcagttctgagaatatggatggaagtaaccctgcactgaatgttcttcagagactttgt
gctgcaactgaacaactcaacctccaggtggatggtggagctgagtgccttgtagaaatt
cgtagcatagtctcagagtcagatgtttcatcatttgaaatacaacatagtggatttgta
aagcagctgttactttatttgacatctaaaagtgaaaaggatgctgtgagcagagagatc
agattaaaaagatttctccatgtatttttttcttctccacttcctggagaagagcccatt
ggaagagtagagcctgtgggtaatgcacctttgttggcattagttcacaagatgaacaac
tgcctcagccagatggaacaatttcctgtcaaagtacatgactttcctagtggaaatgga
acaggaggcagcttttctctcaacagaggatcacaggctttaaaattttttaacacacat
cagttaaaatgccagttacaaagacatccagactgtgcaaatgtaaaacagtggaaaggt
ggacctgtcaagatagaccccctggctttggtgcaagctattgaacgataccttgtagtt
agaggatatggaagagtgagagaagatgatgaagatagtgatgatgatggctccgatgaa
gaaattgatgagtctctggctgctcagttcttaaattcaggaaatgtaagacacaggctt
cagttttacattggagaacatttgctaccatacaatatgactgtgtaccaggcagtgcgg
cagttcagtattcaggctgaggatgaaagggagtctacagatgatgagagcaatcctctc
ggaagagccggtatttggacaaagacacatacgatatggtacaagcccgtgagagaggat
gaagaaagtaataaagattgtgttggtggtaaacgaggaagagcccaaacagctcccaca
aaaacttccccaagaaatgcaaaaaaacatgatgaactttggcatgatggagtgtgtcca
tcagtgtcaaatcctttagaagtttatctcatacccacaccaccagaaaacataactttt
gaagacccatcattagatgtgattcttctcttaagagttttacatgccatcagtcgatac
tggtattatttgtatgataatgcagtatgtaaggaaattattccaactaatgaatttatt
aatagtaaattgacagcaaaggcaaataggcagcttcaagatcctttagtaatcatgaca
ggaaacatcccaacatggcttactgaactaggaaaaacctgccccttttttttccctttt
gatactcgacaaatgcttttttatgtaactgcatttgatcgagaccgagcaatgcaaaga
ttacttgataccaatccagaaatcaaccagtctgattctcaagatagcagagttgcacct
agattggataggaaaaaacgcactgtgaacagagaggagctattgaagcaagctgagtct
gtgatgcaggatcttggcagctcccgggccatgttggaaatccagtatgaaaatgaggtt
ggtaccggtcttgggcctacactggagttttatgcacttgtatctcaggaactgcagaga
gctgacttgggtctctggagaggtgaagaagtaactattagcaatccaaaaggaagccaa
gaagggaccaagtatattcaaaacctccagggcctgtttgcacttccttttggtaggaca
gctaagccagctcatattgcaaaggtcaagatgaaatttcgttttttaggaaaattaatg
gctaaggctatcatggattttagattggtggatcttccccttggcttacccttttataag
tggatgttgaggcaagaaacttcactgacatcgcacgatttgtttgacattgacccagtt
gtagccagatcagtgtatcacttagaagacattgtccgacagaagaaaagacttgaacaa
gataaatcccagaccaaagagagtctacagtatgcattagaaacccttactatgaatggc
tgctcagttgaagatctaggcttggattttaccctaccaggatttcccaacattgaactg
aagaaaggaggaaaggatacaccagttacaatccacaacttagaggaatatttgagactg
gttatattctgggcactaaatgaaggtgtttccaggcaatttgactcattccgagatgga
tttgaatcagtcttcccactcagtcatcttcagtacttctacccagaagaactggatcag
ctgctgtgtggcagcaaagcagacacatgggatgcaaagacattgatggaatgctgcagg
cctgatcacggttatactcatgacagtcgggctgtgaagttcttgtttgagattctcagt
agttttgataacgaacagcagaggttatttctccagtttgtgacaggtagcccaagattg
cctgttggaggcttccggagtttgaatccacctttgacaatagtccggaagacatttgaa
tccacagaaaacccagatgacttcctgccctctgtaatgacttgtgtgaactatcttaag
ttgccggactattcaagcattgagataatgcgtgagaaactgttgatagcagcacgagaa
gggcagcagtcattccatctttcctga
DBGET
integrated database retrieval system
