Suncus etruscus (white-toothed pygmy shrew): 126002073
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Entry
126002073 CDS
T09902
Symbol
ATG16L1
Name
(RefSeq) autophagy-related protein 16-1 isoform X1
KO
K17890
autophagy-related protein 16-1
Organism
setr
Suncus etruscus (white-toothed pygmy shrew)
Pathway
setr04136
Autophagy - other
setr04140
Autophagy - animal
setr04621
NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
setr00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
126002073 (ATG16L1)
04136 Autophagy - other
126002073 (ATG16L1)
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
126002073 (ATG16L1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
setr04131
]
126002073 (ATG16L1)
03029 Mitochondrial biogenesis [BR:
setr03029
]
126002073 (ATG16L1)
Membrane trafficking [BR:
setr04131
]
Autophagy
Autophagosome formation proteins
Atg12 conjugation proteins
126002073 (ATG16L1)
Others
Specific organelles associated proteins
Auto phagosome
126002073 (ATG16L1)
Mitochondrial biogenesis [BR:
setr03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
126002073 (ATG16L1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
Beta-prop_WDR3_1st
ATG16
WD40
Beta-prop_THOC3
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_CDC20-Fz
Beta-prop_WDR36-Utp21_2nd
WD40_Gbeta
WDR55
EIF3I
Beta-prop_WDR3_2nd
Beta-prop_TEP1_2nd
Beta-prop_WDR36-Utp21_1st
Beta-prop_CAF1B_HIR1
Beta-prop_EML
WD40_MABP1-WDR62_2nd
Beta-prop_Aladin
WD40_MABP1-WDR62_1st
Beta-prop_TEP1_C
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR75_1st
Beta-prop_DCAF4
Beta-prop_SCAP
WDR90_beta-prop_4th
eIF2A
Beta-prop_EIPR1
Beta-prop_RIG_2nd
WD40_RFWD3
ANAPC4_WD40
Beta-prop_IFT140_1st
Beta-prop_DCAF12
Beta-prop_IFT122_1st
NBCH_WD40
Beta-prop_ACSF4
Beta-prop_HPS5
Beta-prop_WDR19_1st
Beta-prop_NWD2_C
Beta-prop_VPS8
CCDC93_CC
Tricorn_2nd
APEH_N
PUMA_CC
TolB_like
Cytochrom_D1
FKBP15
Beta-prop_WDR35_TULP_N
CC_Bre1
Motif
Other DBs
NCBI-GeneID:
126002073
NCBI-ProteinID:
XP_049625265
LinkDB
All DBs
Position
2:complement(18393943..18425614)
Genome browser
AA seq
624 aa
AA seq
DB search
MSSGLRAADFPRWKLHIAEELRRRDRLQRQAFEEIILQYNKLLEKSDLHSVLAHKLQADK
HDLPNRHDTSPGHDGARSESQLQEMAQLRIKHQEELTELHKKRGELAQLVIDLNNQMQQK
DREMQANEAKIAECLQNISDLESECLELRSKLQDLERANQTLKDEYDALQITFTALEEKL
RKTSEENQELVTRWMAEKAQEANRLNAENEKDSRRRQARLQKELAEAAKEPLPVEQDDDI
EVIVDETSDHAEDTSPVRAVCRTATKRLSQPAGGLLDSITNIFGLSESPLSGHHHSSDAA
RRRSVSSFPTPQDNMEPHPGSSKEVRVPTTAVTVFDAHDGEVNAVQFSPGSRLLATGGMD
RRVKLWEVIGEKCELKGSLSGSNAGITSIEFDSAGSYLLAASNDFASRIWTVDDYRLRHT
LTGHSGKVLSAKFLLDNARIVSGSHDRTLKLWDLRSKVCIKTVFAGSSCNDIVCTEQCVM
SGHFDKKIRFWDIRSESIVREMELQGRVTALDLNPERTELLTCSRDDLLKIIDLRVNAVR
QTFSAPGFKCGSDWTRVVFSPDGRYVVAGSAEGALYVWNVASGKVEKVLCKHHSSSINAV
AWAPSGSHVISVDKGSKAVLWSDY
NT seq
1875 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcgggcctccgcgccgccgatttccctcggtggaagctgcacatcgcggaggag
ttgcggcggcgggaccggctgcagcgccaggcgttcgaggagatcatcctgcagtataac
aagttgttggaaaagtccgatcttcattcagtgttggcccataagctacaagctgacaag
catgacctaccaaatagacatgatacaagtcctggacatgatggagcacggagtgagagt
caactgcaagaaatggcccagctgaggatcaagcaccaggaggagctgacggagctgcac
aagaaacgtggggagctggcccagttggtgatcgacctgaacaaccagatgcaacagaag
gaccgagagatgcaggcaaatgaggccaaaatcgcagagtgtttgcaaaacatctccgac
ctggagagtgagtgtctggagctgcgaagtaagctacaggacctggagcgagccaaccag
accctgaaggatgagtatgatgccctgcaaatcaccttcactgctctggaggagaaattg
aggaagacttctgaagagaaccaggaactggttactcggtggatggctgagaaagcccag
gaggccaatcgcctaaatgctgagaatgagaaggattccaggaggcggcaagcccggctg
cagaaggagcttgcagaagcagcaaaggagccgctgccagttgaacaggatgatgacatt
gaggttattgtcgacgagacctcagaccacgccgaggacacgtcgcccgtgcgtgcggtc
tgcagaacggccactaagcgactctcgcagcctgctggaggccttctggattctatcact
aatatctttggtctgtctgagtctcccctttctggacatcatcattcttccgatgctgcc
aggaggcgctctgtctcttccttccccaccccccaggacaacatggaacctcatcctggt
tccagtaaagaagtgagggtcccaaccactgcagtcactgtctttgatgctcacgatggg
gaggtcaacgccgtgcagttcagcccagggtcccggctcctggccactggaggcatggac
cgcagggtgaagctgtgggaggtgattggagagaagtgcgagttgaaaggatctctctcc
ggcagtaacgcaggaatcaccagcattgaatttgatagtgctggatcttacctcctagca
gcttccaatgactttgccagccggatctggaccgtggatgactatcggttacggcataca
ctcacgggccacagcggcaaagtgctctctgccaagttcctgctggacaacgcacggatc
gtatccggaagccacgatcgcaccctcaaactctgggacctccgcagcaaagtctgcata
aagacggtgtttgctggttccagctgcaacgacattgtgtgcacagaacagtgtgtcatg
agcggacattttgacaagaagatacggttctgggacatccggtcagagagtattgtccgg
gagatggagctgcaggggagggtcacagccctagacctgaacccagaacggacggagctt
ctaacctgctcccgggatgacctgttgaagatcatcgacctgcgcgtcaatgccgtgcgt
cagacgttcagtgctccagggttcaagtgcggctcagattggactcgagtggtgttcagc
cctgatggcagatacgtggtagcgggctcggctgagggcgccctgtatgtatggaatgtg
gcctcggggaaggtggagaaggttctctgcaagcaccacagctcgtccatcaatgctgtg
gcctgggccccctccggatcccacgtgatcagtgtggacaaaggcagcaaggctgtgctg
tggtcggactactga
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