Suncus etruscus (white-toothed pygmy shrew): 126002787
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Entry
126002787 CDS
T09902
Symbol
FOCAD
Name
(RefSeq) LOW QUALITY PROTEIN: focadhesin
KO
K27498
focadhesin
Organism
setr
Suncus etruscus (white-toothed pygmy shrew)
Brite
KEGG Orthology (KO) [BR:
setr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
setr03019
]
126002787 (FOCAD)
Messenger RNA biogenesis [BR:
setr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
126002787 (FOCAD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Focadhesin
DUF3730
HEAT
Motif
Other DBs
NCBI-GeneID:
126002787
NCBI-ProteinID:
XP_049625357
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All DBs
Position
1:47705486..48032094
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AA seq
1802 aa
AA seq
DB search
MSDDIRKRFDFPNPLIQSQAVGHLIAAVLKENSFSGKIHQSTNQTPALNLLWEKCCSDSV
VVRTACCESLVALVAQEHAEFDYILNGILNLIPSARNTHGLIKAIMKLLQMQALKEGQGG
EKNIQDIYTIRNHPHPLITVLEHRPDCWPVLLQQLTAFLQQCPERSEVSCIQIITPFLWY
LYCEPSQLQENAKLRLALLKVLLQPRAIYDKGQPTVLEQQILQLCCDMIPCLQLKDLIQT
TEVMLFIEEVYLTLLRHPIFWKVQLIQLTLQVLCVCEVSLKITGECSSLICLLEHSIESL
NEDLPVELVLIGIALLLLQSSASQQKPILSLALKLLSFTEGKKIPKSSLLLVMPVLQILS
STALEECISMDADGPSRQQLALDLLELVQQESYGDDQQKLSHKFLFPITGMYGSIFTAWR
ILEIMREESAARDWLSSIKSLLSIMTEVPMHVFLLLAYLLVEDKGKNLHQILKVTTELAQ
ADSSQVPNLIPVLMFKLGRPLEPLLYNDILYTLPSLGVHKVCVGQILRIIQLLGTTPQLR
AVTLRLLTSLWEKQDRVYPELQRFMAMSDVPSLTVSKEVQWEKLIAKAASIRDICKQRPY
QHGADMLAAISQVLNECTKPDQATPAALVLQGLHALCQAEVVCIRSTWNALSPKLSCDTR
PLILKTLSELFSLVPSLTVNTAEYENFKVQVLSFLWIHTQNKDPVVANAAYKALSYFSAG
EHTILHLPEKIRPEIPDDLEEEEDEESDEKEVDLTVPGSCYLKLLSLTAPSVLPALEEFF
TSLVKQEMVNMPRGVYHSALRGGARSDQGKTVAGIPNFILKMYEKNKQPGLKPGLAGGML
FCYDISMYQSKDGKPLNRLMASRGRSFKQTSLALVHEVHIQLLEWHRAVFIPQAWLAYMT
RAYHAILQGRIGELELQLKHEKKIXEIQYKKSTAWLWVRDMLTDEITKAAAKESPVVKGN
ALLALSSLAVVVSKHEASLSDSEGVLEVSKGCNPNFLSMKEWVFMVFDTLLVIVDSHYQP
RGQLFSWFYYKSYSGENTASAIARSAAATSLSLLVPVFIISCKEKVEEILNMLTARLPGK
PSADESQAVQIHMGLALGMFLSRLCEEKLSDMSGQQMNLLLMKSLDALENCCFDTNLEYN
TGCILGVGLVLSLMSHSSQTESRVHVAASLRRLSEYLDESGSQSRTFQEVLAYTLSCVCT
SAFSAGIIEATEAEDIMNKLRLLVENNQQTSGFALALGNIVHGLSVCGHGKAEDLGTKLL
PAWIKIALAENTPTMLCLAALHGMVALVGSEADVMQLKSEAIQTSHFQNRLNEVIRTLTQ
VISVSGVIGLQSNAIWLLGHLHLSTLSSNQSRTSVPTDYSYLPESSLIRAAIGFFIAGGK
KGPESVPPSLLKVVMKPIATVGENYQYPPVNWASLLSPLMRLNFGEEIQQLCLEVMVTQT
QSSQNAAALLGLWVMPPLIHSLGLNIKKYLLVSAPLWIKHVSDEQILDFVENFIVAVFKT
SSNPELCPSALQGLSQAMKLPSPSFHLWSLLCKATANIFDLLPNKIRRTDLELYISVAKC
LSEMTDDEVNRVTQITESSIEKAAFVKLYLVSQGRLPLMSLTDMLCVAVQHQGKDTLAWM
ILHSLYQARIVSHANTGVLKRMEWLLEVMGYIRNVAYQATSVQNVALDEALDFLLLIFAT
AVVAWADHAAPLLLGLSASWLPWHQENSPAGPASSFFGRSPIHRVTLQETLTLLPSSMPL
LLQKEPWKEQTQKFIDWLFSIMESPKEALSSESRDLLKATLLSLRTLPEFKKKAVWTRAY
GW
NT seq
5409 nt
NT seq
+upstream
nt +downstream
nt
atgtcagatgatatcaggaaaaggtttgactttccaaatcctcttatccaatcacaggcg
gtgggtcatcttattgctgcagtcctaaaagaaaatagcttttcaggaaagatccaccag
tccacaaaccagactcctgcattgaacctgctgtgggagaagtgttgtagtgacagcgtg
gtggttcgaacagcctgctgtgagagtctggtggcacttgttgcgcaggagcacgcagaa
ttcgattatattctcaatgggatactgaacctcatcccatctgccaggaatacacatgga
ttgataaaagctattatgaaattattacaaatgcaagctcttaaggaaggacaaggtggg
gagaaaaatattcaggacatatatactattagaaatcatcctcaccctttgatcactgtg
ctagaacacagacctgattgctggccagtacttctgcaacagctaacagcttttctccag
caatgccctgaaaggtcagaagtttcatgtattcaaataataacaccatttttatggtac
ctctattgtgagccttcccagttacaagaaaatgctaaacttcgtctagcactcttgaaa
gtcttacttcaaccccgggctatttatgacaaaggacaaccaactgtattggaacagcag
atactacaactgtgttgtgacatgattccatgcttgcagttaaaagatttgatacagaca
acagaagtgatgttatttattgaagaagtatatttaacccttctgcgtcatcctattttc
tggaaagtccagctgatccagctaacccttcaggtcctgtgtgtttgtgaagtcagctta
aagataactggggaatgctcatctttaatttgtcttttagaacacagcattgaatcgttg
aatgaggatcttcctgttgaactggtcctaattgggatagctttactgcttctacagtct
tcggcaagtcagcagaaaccgatcttaagtctagctttgaagcttctctcttttactgag
ggtaagaaaattccaaagtcctccctgctcctcgtgatgccagttctgcagatattatct
tctacagccttagaagagtgcatatctatggatgcagatggtccttctaggcagcagttg
gcactagaccttttggaactggtacagcaggaatcctatggggatgaccaacaaaagctg
tctcacaaatttctgtttcccataactggcatgtatggatcaatatttacagcctggagg
atccttgaaataatgagagaagagtcagcagcaagggactggttgtcttcaatcaaatcc
ttgctctctattatgacagaagtccctatgcatgtttttcttctgctggcatacctcctt
gttgaagataaaggaaagaatcttcatcaaatactaaaggttactacagaattggcccaa
gcagattcttctcaggttccaaatttgattccagttttgatgttcaaattgggaagaccc
ctggaacctttattatataatgatatcttgtatactttaccttctcttggtgttcacaag
gtatgtgtagggcaaattctacgaataattcaacttcttggcactactccacagctaaga
gcagtcactttgcgcttattaacatctttgtgggaaaagcaggatcgtgtctatcctgaa
ctgcagcgtttcatggccatgtctgatgtgccctctctgactgtgagcaaggaagtacag
tgggagaaactgattgccaaagcagcatccatcagagatatatgtaagcaaaggccttat
cagcatggggcagatatgctggcagcaatttctcaggtgctgaacgaatgtaccaaacct
gatcaagctactccagcagccttggtgttacaaggtcttcatgctctctgccaagctgag
gttgtttgcattcgctctacttggaatgctctctccccaaaactgagttgtgatacaaga
cccctcattttgaagactctcagtgaattgttttctctggttccttctttaacagtcaat
actgctgaatatgagaattttaaagttcaagttctcagcttcctttggattcatactcaa
aacaaggatccagttgtagccaatgctgcatataaagctctctcctactttagtgctggt
gaacacacaattcttcatctgcctgaaaagataaggccagaaattcctgatgatctagaa
gaagaggaagatgaggagagtgatgaaaaggaggtggatctgacagttcctggctcttgc
tatctcaaactgctgtcacttactgctccttcagttttaccagctttggaggagtttttt
acctcacttgtgaagcaagaaatggtgaatatgccccgtggggtatatcactctgcgtta
agaggaggtgcccgttcagatcaagggaagactgtagcaggaatccccaattttatattg
aaaatgtatgaaaaaaataagcagccaggattgaaaccaggtcttgcaggtggcatgcta
ttttgttatgatatttcaatgtatcagagtaaagatggcaaaccattaaatcgactgatg
gccagtagaggacgaagtttcaagcagacctctcttgctttagtgcatgaggttcacatc
cagcttctggagtggcaccgtgcagtctttatcccacaggcctggctcgcctatatgact
cgagcttatcatgccattttgcagggaagaataggagaactggaattgcagttaaaacat
gaaaagaagatctgagagatacagtacaaaaaaagcacagcctggctctgggtccgggac
atgttaactgatgagatcacaaaggcagctgcaaaggagagtccagtggtcaaaggcaat
gctttgttagccttaagcagccttgctgtggttgtctccaaacacgaagccagcctctca
gactctgagggggtcctggaggtgagtaaagggtgcaaccctaatttcctttcaatgaaa
gagtgggtttttatggtgtttgatactctcctggtcattgtggatagccattaccaaccc
cgaggacaacttttctcctggttttattataaatcctattctggtgaaaacactgcaagt
gccattgcccgttctgctgccgccacgtctttgtctctccttgtgcccgttttcattatc
tcttgcaaagagaaggttgaggaaattctgaacatgctgactgccaggttacctgggaaa
ccaagtgctgatgaatctcaggctgtgcaaatccacatgggcctggctttggggatgttt
ctctctcgcttgtgtgaggagaaactcagtgatatgtctggtcaacaaatgaatcttctt
ctaatgaagtctttggacgccctggaaaattgctgcttcgacactaatcttgaatataac
accggctgtattttgggcgttggacttgttctgtccctcatgagccacagcagccaaacg
gagtctcgagttcatgtggctgcctccctgcggaggctctctgaatacctggatgaaagt
gggagccaaagcagaaccttccaggaggtcctcgcctatacccttagctgtgtatgtaca
tcagcattcagtgctggaattattgaagcaacggaggcagaagatatcatgaacaaactt
cgactattggtagagaacaaccagcagacttcaggttttgccctggcattaggaaacata
gtccatggtttgtctgtgtgtggacatggaaaagctgaagacttgggcaccaaactgctt
cctgcctggatcaaaattgctctagcagagaacactcctacaatgctttgtttggcagct
cttcatggcatggtggccttggttggctctgaagcagatgtaatgcagctaaagtcagaa
gccatacagacctctcattttcaaaacagacttaacgaagtcattagaaccttgactcag
gtcatcagtgtttctggggtgattggtcttcagtcaaatgcaatatggcttctaggacat
cttcatctatctactctgtcatcaaatcagagtagaacctcagttcctactgactacagc
tatttgcctgaaagcagtttaattagagcagccattggcttcttcattgcgggtggaaaa
aaaggtcctgaatctgtgcctccttctcttctcaaagtagtgatgaaacccatagcaact
gttggagaaaattaccagtacccacctgtgaactgggcctcactcctgtccccacttatg
agactaaactttggtgaagagatacagcagctgtgccttgaagttatggtgacccagact
caatcatcccaaaacgcagctgcacttttgggattgtgggtgatgccaccattgatccac
agtctgggactgaatatcaagaaatatctcttggtatccgcacctctgtggataaaacac
gtctctgatgaacagattctggattttgttgaaaactttatagtggcagtttttaagaca
tcttccaatcctgagttatgtccaagtgccttacagggtcttagccaggccatgaaactt
cccagcccttcctttcacctctggagtctgctctgcaaagctactgcgaacatttttgac
cttctgccaaataagattcggagaactgatctagagctgtatatcagtgtagcaaaatgc
ctctcagaaatgacagatgatgaagtcaatcgggttacccagattacagagagcagcata
gaaaaggctgcctttgtcaagctgtacttggtttctcaaggacgactccccttgatgagc
ttgactgatatgttgtgtgttgctgttcagcaccaaggaaaagacaccctggcctggatg
atccttcacagtttatatcaggcacgaattgtgagccatgccaacacaggtgtgctgaaa
agaatggaatggctcttagaagtgatgggctacatcagaaatgtggcttaccaggcaaca
tctgttcagaacgtggctctggatgaggctttggacttcttgttgctgatatttgcaacc
gcagtagttgcatgggcagaccatgctgcccctcttctccttggcctcagtgccagttgg
ttgccatggcatcaagagaatagcccagctggtccagcatcaagcttttttggcaggagt
ccaatacacagggtcactctgcaggagactctaactctcctgcccagtagtatgcctctt
ctgctgcagaaagagccatggaaggaacaaacccaaaagttcattgactggctcttcagc
atcatggaaagtcctaaagaagccctctcatcagaatccagggaccttttaaaagccacg
ctgctgtccttgagaactcttccagaatttaagaagaaagctgtatggaccagagcatat
ggctggtga
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