Suncus etruscus (white-toothed pygmy shrew): 126003754
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Entry
126003754 CDS
T09902
Symbol
PABPC4L
Name
(RefSeq) polyadenylate-binding protein 4-like
KO
K13126
polyadenylate-binding protein
Organism
setr
Suncus etruscus (white-toothed pygmy shrew)
Pathway
setr03015
mRNA surveillance pathway
setr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
setr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
126003754 (PABPC4L)
09123 Folding, sorting and degradation
03018 RNA degradation
126003754 (PABPC4L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
setr03019
]
126003754 (PABPC4L)
03041 Spliceosome [BR:
setr03041
]
126003754 (PABPC4L)
Messenger RNA biogenesis [BR:
setr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
126003754 (PABPC4L)
mRNA cycle factors
Stress granule specific factors
126003754 (PABPC4L)
Spliceosome [BR:
setr03041
]
Complex C
Other components
Complex C specific factors
126003754 (PABPC4L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_10
RRM_MARF1
RRM_occluded
Nup35_RRM_2
Motif
Other DBs
NCBI-GeneID:
126003754
NCBI-ProteinID:
XP_049626059
LinkDB
All DBs
Position
3:124431134..124432534
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AA seq
376 aa
AA seq
DB search
MQLDPKYRQASLYVGDLHADVTEDLLFRHFNAVGPVLSIRICRDALSRRSLGYAYVNFLQ
PADAQRALDTLNFQRLLGRTTRLMWAQRDARLRRSGVGNVFIKNLDRSIDSRALHARFSA
FGAILSSKVMLDERGGSRGYAFVHFQEQRAAELAIESMHGALLGARTLFVGRFQSRGERA
RLQLQNRAEQPFTNVYVKNLGPAVDDARLWQLFAGYGRPLSAKVMSDDQGRSRGFGFVSF
DSPEAARRAVEGLHGRSLDGQALFVGRAQSKAERQAELQQRFEQQRLERDEQPRPAPVAR
LYVRNLDDSVDDERLRGAFAAFGSLSRVKVMRQDGRSKGFGLVCFDAPEDAARALAAMNG
RMLGSKALSIAPAQGP
NT seq
1131 nt
NT seq
+upstream
nt +downstream
nt
atgcagctggaccccaaataccgccaggcgtccctctatgtgggcgacctgcacgcggac
gtgaccgaggacctgctgttccgtcactttaacgcggtgggcccggtgctgtccatccgc
atctgccgggacgcgctcagccgccgctcgctgggctacgcgtacgtgaacttcctgcag
ccggcggacgcgcagcgggcgctggacacgctcaacttccagcggctgctcgggcgcacc
acgcggctcatgtgggcgcagcgcgatgcccgtctgcggcgctcgggcgtgggcaacgtg
ttcatcaagaacctggatcgcagcatcgacagccgcgccctgcacgcgcgcttctcggcc
ttcggggccatcctgtcgtccaaggtgatgctggacgagcgcggtggctcgcggggctac
gctttcgtgcacttccaggagcagcgcgcggccgagctggccatcgagagcatgcacggg
gcgctcctgggcgcccgcaccctgttcgtgggccgcttccagagccgaggcgagcgcgcc
cgcctgcagttgcagaaccgcgccgaacagcccttcaccaacgtctacgtgaagaacctg
ggcccggccgtggacgacgcgcgcctgtggcagctcttcgccggctacgggcggccgctg
agcgccaaggtcatgagcgacgaccaaggccgctcccggggcttcggcttcgtgagcttc
gacagccccgaggcggcgcgccgggccgtggaggggctgcacgggcgctccctggacggg
caggcgctgttcgtgggccgcgcgcagagcaaggccgagcgccaggccgagctgcagcag
cgcttcgagcagcagcgcctggagcgcgacgagcagccgcggcccgccccggtggcccgg
ctctacgtgcgcaacctggacgacagcgtggacgacgagaggctgcgcggggccttcgcc
gccttcggttcgctgagccgcgtcaaggtgatgcgccaggacgggcgcagcaagggcttc
gggctcgtctgcttcgacgcccccgaggacgccgccagggcgctggccgcgatgaacgga
cgcatgctgggctccaaggcgctcagcattgccccggcccagggaccctag
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