Suncus etruscus (white-toothed pygmy shrew): 126003835
Help
Entry
126003835 CDS
T09902
Symbol
LRBA
Name
(RefSeq) lipopolysaccharide-responsive and beige-like anchor protein isoform X1
KO
K24181
lipopolysaccharide-responsive and beige-like anchor protein
Organism
setr
Suncus etruscus (white-toothed pygmy shrew)
Brite
KEGG Orthology (KO) [BR:
setr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
setr04131
]
126003835 (LRBA)
Membrane trafficking [BR:
setr04131
]
Endosome - Lysosome transport
Others
Others
126003835 (LRBA)
Endosome - Golgi transport
126003835 (LRBA)
Autophagy
Autophagosome formation proteins
Atg8 conjugation proteins
126003835 (LRBA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4704
Beach
DUF1088
NBCH_WD40
PH_BEACH
WD40
Laminin_G_3
Neurobeachin
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_EML_2
Beta-prop_WDR75_1st
Beta-prop_EML
WD40_WDHD1_1st
WD40_MABP1-WDR62_2nd
WD40_MABP1-WDR62_1st
Beta-prop_WDR90_POC16_2nd
WDR55
SUKH_6
Motif
Other DBs
NCBI-GeneID:
126003835
NCBI-ProteinID:
XP_049626142
LinkDB
All DBs
Position
3:111423929..112085950
Genome browser
AA seq
2859 aa
AA seq
DB search
MASGDNQVPSSPPPPPPTGDDDDGGGGGKAEEPAAPADRERDRERGALSLQPGLPIRGIR
MKFAVLTGLVEVGEVSNRDLVETVFNLLVGGQFDLEMNFIIQEGESIICMVDLLEKCDIT
CQAEVWSMFTAILKKSIRNLQICTEVGLVERVLGKIENVDNMIADLLVDMLGVLASYNLT
VRELKLFFSKLQGDKGRWPPHAGKLLSVLKHMPQKYGPDAFFNFPGKSAAAIALPPIAKW
PYQNGFTFHTWLRMDPVNNINVDKDKPYLYCFRTSKGLGYSAHFVGGCLIITSIKSKGKG
FQHCVKFDFKPQKWYMVTIVHIYNRWKNSELRCYVNGELASYGEITWFVNTSDTFDKCFL
GSSETADANRVFCGQMTAVYLFSEALNAAQIFAIYQLGLGYKGTFKFKAESDLFLAEHHK
LLLYDGKLSSAIAFTYNPRATDAQLCLESSPKDNPSIFVHSPHALMLQDVKAVLTHSIQS
AMHSIGGVQVLFPLFAQLDYRQYLSDEVDLTICSTLLAFIMELLKNSIAMQEQMLACKGF
LVIGYSLEKSSKSHVSRAVLELYLAFSKYLSNLQNGMPLLKQLCDHILLNPAIWIHTPAK
VQLTLYTYLSTEFISTVNIYNAIRRVGTVLLIMHTLKYYYWAVNPQNRSGITPKGLDGPR
PNQKEILSLRAFLLMFIKQLVVKDSGVKEDELQAILNYLLTMHEDDNLMDVLQLLVALMS
EHPNSMIPAFDQRNGLRVIYKLMASTSEGIRVQALKAMGYFLKHLAPKRKAEVMLGHGLF
SLLAERLMLHSNLITMTTYNVLFEILIEQICTQVIHKQHPDPDSSVKIQNPQILKVIATL
LRNSPQCPESMEVRRAFLSDMIKLFNNSRENRRSLLQCSVWQEWMLSLCYFNPQNSDEQK
ITEMVYAIFRILLYHAVKYEWGGWRVWVDTLSITHSKVTFEIHKENLASIFREHQEKVGD
ELEQCPSNLIQAVSGTNGDAHASVGSQLPDSKGSPVSSHSTKNSDENSHIEKTSLVDSTS
SIELQTQSTSNDERKVGQENQELSDEVSVEETHSHEAVNAGDLEVSSDKVEAATLPSNSL
KITDKDLITVSEVIASVSSPSEEDASEVPELLEKSTAEEEDDDDYVELKIESSPTEVISL
PTELQDNSLLPAASEVSEKLDMFNNDHKLSCQEEEPVRKQTDTDTQDSKDSGILTMTASG
SSTDSPDVYASRTVQSNTDQLLEEGKKISDSHTNNLECPTTSEQRIAKLDVSSVATDTER
LELKASTNGEISQPHQPVLEMSRQQERLVQGTAPDSVNGQRRDSRSTVFRIPEFKWSQMH
QRLLTDLLFSIETDIQMWRSHSTKTVMDFVNSSDNVIFVHNTIHLISQVMDNMVMACGGI
LPLLSAATSATHELENIEPTQGLSIEASVTFLQRLISLVDVLVFASSLGFTEIEAEKNMS
SGGILRQCLRLVCAVAVRNCLECQQHSQLKSKGDTVKRLKTIHSLIPMGKSAAKSPVDII
TGGISPIRDLERLLQDMDINRLRAVVFRDIEDSKQAQFLALAVVYFISVLMVSKYRDILE
PQNERSTQETGSESGNISLTDVENTPTTLSAAAPTSGEESECTSSSARRRDSGIGEETAT
ALGANVDPAPQTAPPSIIAGPDAVSEVLSTLSLEVSKPQETKNDGGNELDNKGAPSVPVS
KNVNVKDILRSLVNIPADGVTVEPALLPPTCLGTLNDLSAEQPVHFRSFDRSVIIATKKS
AVLPSVPSTSASSSAVSVVSSVDSTQTSDVGGDSPGGRSSNAKLPSVPAVGSVPQDQVSN
MSITERLEHALEKAAPLLREIFVDFAPFLSRTLLGSHGQELLIEGTSLVCMKSSSSVVEL
VMLLCSQEWQNSIQKNAGLAFIELVNEGRLLSQTMKDHLVRVANEADFILSRQRAEDIHR
HAEFESLCAQYSANEREDEKMCDHLIRAAKYRDHVTATQLIQKIINILTDKHGAWGNSTV
SRPREFWRLDYWEDDLRRRRRFVRNPLGSTHPEATLKTAVEHAADEDILAKGKQSIKSQA
LGNQNSENEVLLEAEDDTLSSVDEKDLENLSGPVSLSTPAQLVAPSVVVKGTLSVTSSEL
YFEVDEEDPNFKKIDPKILAYTEGLHGKWLFTEIRSIFSRRYLLQNTALEIFMANRVAVM
FNFPDSATVKKVVNCLPRVGIGTSFGLPQTRRISLASPRQLFKASNMTQRWQHREISNFE
YLMFLNTIAGRSYNDLNQYPVFPWVITNYESEELDLTLPSNFRDLSKPVGALNPKRAAFF
AERYESWEDDQVPKFHYGTHYSTASFVLAWLLRIEPFTTYFLNLQGGKFDHADRTFSSIS
RAWRNSQRDTSDIKELIPEFYYLPEMFVNFNNYNLGVMDDGTVVSDVELPPWAKTSEEFV
RINRLALESEFVSCQLHQWIDLIFGYKQQGPEAVRSLNVFYYLTYEGAVNLNAVTDPVLR
EAVEAQIRSFGQTPSQLLIEPHPPRGSAMQVSPLMFTDQAQQDVIMVLKFPSNSPVTHVA
ANTQPGLMNPAVITVTASRLFAVNKWHNLPAHQGAVQDQPYQLPVEIDPLIANNTGIHRR
QIADLLDQSIQVHSQCFVITSDNRYILICGFWDKSFRVYSTDTGKLIQVVFGHWDVVTCL
TRSESYIGGNCYILSGSRDATLLLWYWNGKSSGIGDNPGSETTTPRAILTGHDYEITCAA
VCAELGLVLSGSKEGPCLIHSMNGDLLRTLDAPENCLKPRLIQASREGHCVVFYESGCFC
AFSVNGKLQATVDTDDNIRAMQLSRDGQYLLTGGDHGVVVVWRVADLKQLFTYPGCDAGI
RAMALSYDQRCVISGMASGSIVLFYNDFNRWHHEYQTRY
NT seq
8580 nt
NT seq
+upstream
nt +downstream
nt
atggcgagcggggacaatcaagtcccttcgtccccaccgccgccgccgccaacaggtgac
gacgacgacgggggcggtggagggaaagccgaggagcccgcggcccccgccgatcgggag
cgggatcgggagcggggcgccctgtccttgcagcccgggctccccatcaggggcatccgg
atgaagttcgccgtgctgaccggcctggtggaagttggggaggtgtccaatagggacctc
gtggagacggtctttaacctgcttgttggaggacaatttgatttggagatgaattttatt
atccaagaaggtgagagcatcatatgcatggtggacctactggaaaaatgtgatattact
tgtcaagcagaagtctggagcatgttcacagccattttgaagaaaagtatacggaatctt
caaatctgcacagaagtaggccttgtagaaagagtccttgggaaaattgaaaatgttgac
aatatgatagcagatcttttagttgacatgttgggcgtgctggctagttataatctgacg
gttcgggaactaaagctattcttcagtaaacttcaaggagacaaaggccgatggcctcca
catgctggaaaattattgtctgtgttaaagcatatgcctcagaagtatggtcctgatgcc
tttttcaacttccctggaaagagtgctgcagctattgcattaccgcctatcgccaaatgg
ccatatcagaatggttttacatttcatacttggcttagaatggatccagtaaataacatc
aatgtggataaggataaaccatatttgtattgtttcagaaccagcaaaggtcttggttat
tctgctcactttgttgggggctgtttgattatcacctcaataaagtcaaaaggaaaaggc
tttcaacactgtgtgaagtttgatttcaaacctcaaaagtggtacatggtaactatagta
cacatttataatcggtggaagaacagtgagctgcgatgttatgtcaatggtgaacttgct
tcctatggagagataacatggtttgtcaacaccagtgatacctttgacaaatgtttcctc
ggttcatcagaaacagcagatgctaatagagtattctgtggtcagatgactgcagtttac
ctttttagtgaagctcttaatgctgcccagatttttgccatttatcaactgggcctcgga
tacaagggtacatttaaattcaaagcagaaagtgacctgtttcttgctgagcatcacaaa
cttttactgtatgatggcaaactctcaagtgccatcgcgttcacatacaacccccgtgct
acagatgcccagctctgcctcgagtcatccccgaaggacaacccctcaatttttgttcat
tcaccacatgcacttatgctacaggatgtgaaagcagttttaacacattctatccaaagt
gcgatgcattcaattggaggagtccaagtgctctttccactttttgcacaattggattat
aggcaatatttgtctgatgaggttgacttgactatatgttcaactttgctggcttttatt
atggagttgttgaaaaattcaattgctatgcaagaacagatgcttgcttgcaagggcttc
ttggtaataggatatagtctagaaaagtcatctaagtcccatgtcagcagagcagtactt
gaactttaccttgcattttcgaagtatctgagtaatctgcagaatgggatgcctttactc
aagcagttgtgtgatcacatacttcttaacccagctatatggattcataccccagccaag
gtccagttgacactttatacttacctgtccacggaattcatcagtacagtcaacatatat
aatgccattcggagagttggaacagtacttcttatcatgcatacactgaaatactattac
tgggcagtgaatcctcagaatcgaagtggtatcactccaaaaggactagatggaccacga
cctaatcaaaaagaaatactttcccttcgagcgttcttacttatgttcattaagcagtta
gttgtgaaggattctggagtaaaggaagatgaactacaagccattcttaattatctgctc
actatgcatgaggatgacaatctaatggatgtcctacaattgcttgtggcattaatgtca
gaacaccccaactctatgatccctgcctttgaccaaaggaatggattacgtgttatttat
aaacttatggcatcaaccagtgaaggaatcagagtacaagctctcaaggccatgggctat
tttttaaaacacctggcccctaaaagaaaggctgaagtcatgcttgggcatggattgttt
tcattgctggctgagagacttatgcttcattcaaatttaatcacaatgaccacatataat
gtcctgtttgagattcttatagaacagatttgtactcaagtgattcataaacagcatcca
gatcctgattcttcagtaaagatacaaaatcctcaaattctaaaagtaattgcgacttta
cttcgaaattctccccagtgtccagagagcatggaagttcgcagagcctttctttctgac
atgatcaaactttttaataatagtagagaaaatagaaggagcttgctccagtgctctgtg
tggcaggagtggatgctttctctctgctattttaatcctcagaattcagatgagcaaaag
ataacagaaatggtctatgccatattcaggatcctactttaccatgcagtcaaatatgag
tggggtggctggcgtgtctgggtcgacaccttatccatcacacattcaaaggtcactttt
gaaatacacaaagaaaaccttgctagcatatttagggaacaccaagaaaaagttggtgat
gaactagagcaatgtccttcaaatcttatccaagcagtttctggcacaaatggggatgct
catgcttcagtgggatctcagctgccagatagcaagggttctcctgtatcttctcacagc
accaaaaatagtgatgagaactcacatattgagaagacaagtttagtagactctacatcc
agtatagaattacaaactcagagtacatccaatgatgaaaggaaagttgggcaagaaaat
caagagttatcagatgaagtttctgtagaagaaacacatagccacgaagcagtgaatgca
ggtgatttagaagtatcttctgataaagtagaagctgcgactcttccctctaattctttg
aaaataactgacaaagatttaataactgtcagtgaagtaattgcttctgtaagttctcct
tctgaagaagatgcttcagaggtaccagaattattggagaagtcgacagcagaggaagaa
gatgatgatgattatgtagagctgaagatagaaagcagccctacagaggtcatcagccta
cccacagaactccaggataatagtttgttgccagctgcatctgaagtcagcgaaaagttg
gacatgttcaataatgaccacaaattgtcatgtcaagaggaagaacctgttagaaaacaa
actgatactgacacacaagattctaaagactctggaatcttgaccatgacagcgtcagga
tcctcaactgactcaccggacgtttatgcttctcggactgtacaatcgaacactgatcag
ttgcttgaggaagggaaaaaaataagtgattctcatactaataacttggagtgtcctact
acttctgaacagagaattgctaagttggatgtttccagtgtggctacagatacagagaga
ctggaattgaaggccagcacaaatggagaaatatctcagcctcaccagcctgtgcttgag
atgtcaaggcaacaggaacggctagtacaaggtacagcaccagattcagttaatggacaa
aggagggattccaggtctactgtgtttcgtattcctgagttcaagtggtctcagatgcat
cagcgtttgctcactgacctactgttttcaatagaaacagatatacagatgtggagaagc
cattcaacaaagacagttatggacttcgtgaatagcagtgataatgtcatctttgtacac
aacacaattcatctgatctctcaagtgatggacaatatggtcatggcttgtgggggtata
ctgccattgctttcagctgctacctctgctacacatgagttggagaatattgaacccact
caaggactttcaatagaagcatctgtgacatttttgcagagactaatcagccttgtggat
gtgcttgtatttgcaagttctcttggcttcactgaaattgaagctgaaaaaaatatgtca
tctggaggaattttacgacagtgtcttcgactagtgtgtgcagtggcagtaagaaattgc
ttagagtgtcagcagcattcacaattgaaaagcaaaggagatacagtaaaacggctgaaa
acaatacacagtctgattcccatggggaaatctgcagcgaagagtccagtggacattatc
acaggtggtatatctcctataagagatcttgaaagactcctacaagacatggatattaat
cggcttagagcagttgtcttcagagacatagaggatagcaaacaagctcagtttctagcc
ttggcagttgtatattttatctctgttcttatggtctcaaagtacagagatattttggaa
ccccaaaatgaaaggagtacccaggaaactggcagtgaaagtggaaatatatctcttact
gatgtagaaaacacacctacaactctcagtgcagctgctccaacatcaggggaagaatct
gaatgcacatcatcttctgctcggaggagggattcaggaattggggaagaaacagctact
gctttaggagccaatgtggacccagctcctcagacagctcctcctagcatcattgctggc
ccagacgcagtcagtgaggtgctctccactctctctttagaagtcagtaaacctcaggaa
accaaaaatgatggaggaaatgagttggataacaagggggcaccatcagtcccagtttcc
aaaaatgtcaatgtgaaggatattctccgaagcttggtgaacataccagcagatggagtc
acggtggagcctgcccttctgccacccacctgccttggcactctcaacgatctgtctgcg
gagcagcctgtgcatttccggtcttttgacagaagtgtcatcattgcaacaaaaaaatca
gcagtgttaccttccgtgccttctacaagtgcatcttcaagtgctgtcagtgtggtttct
tcagtagactcaacccaaacctcagatgtgggaggagactcacctggtggtagatcttct
aatgcaaaattgccttcagttcctgcagttggttcagttccacaagaccaagtctcaaat
atgagtatcaccgaaagactggaacatgctctggaaaaggctgctcctcttttgagagaa
atttttgtggattttgccccttttctttctcggacgcttttgggtagccatggacaagaa
ttacttatagaaggaacaagcttggtttgcatgaagtctagcagttcagttgtggaactg
gttatgctgctgtgctctcaggagtggcagaattccattcagaagaatgcaggccttgct
tttattgaacttgttaatgaaggaaggttacttagccaaacaatgaaagatcatctggta
agagtagccaatgaagctgattttatcctgagcaggcagagagcagaagatattcacaga
catgcagaatttgagtcactgtgtgcccagtattctgcaaatgaacgagaagatgagaag
atgtgtgatcacttgatcagagcagctaaatatcgagaccatgtgacagctactcaactc
atccagaaaattatcaacattctcacagacaagcatggagcctggggaaattctacagtg
agtcgtcctcgtgagttctggcgccttgactactgggaagatgacttgcggcgccggcga
cgatttgtgcgtaaccctctaggatcgacacatcctgaagcgacactaaaaacagccgtg
gaacacgctgcggatgaagatatccttgctaaaggcaaacagtccatcaagagtcaggct
ttggggaatcagaactccgaaaatgaggtcctcctggaagctgaggatgatactctgtca
tccgtggacgagaaagatttagagaatctttcgggtcctgttagcttgagcacaccagca
cagcttgtggccccctctgtagtagtcaagggcactctttctgtcacctcctctgaactc
tattttgaagtggatgaagaggaccctaacttcaagaagatagaccctaagattctggca
tatacggaaggtctacatggaaaatggctcttcacagagattcgatcaatcttctctcgt
cgttatctattgcagaatacagccctggagatctttatggcaaacagagttgctgtcatg
ttcaactttccagactctgctacagtaaagaaggtggttaactgtctacctcgtgtgggt
attggaaccagttttggattgcctcaaaccaggcgcatctcattagctagtccacgtcag
ctttttaaagcttctaatatgacgcaacgatggcaacacagagagatttcaaattttgaa
tatctcatgtttctcaatacaatagcaggacgaagctataatgacttaaatcagtaccca
gtctttccctgggtcatcactaattatgaatcagaggaactggatctcaccttgcctagt
aacttcagggacttgtccaagccagtaggagccttgaatcctaaaagagcagcatttttt
gcagagcgatatgaatcatgggaagatgatcaggttccaaagttccactatggtactcat
tactctactgcaagttttgttcttgcatggctgctaagaatagaacccttcacaacttat
tttctaaatttacaaggagggaaatttgatcatgcagatcgaactttttcatcaatttcc
agagcttggcgaaatagtcagcgtgatacatctgatattaaggagttgatccctgaattt
tattatctccctgagatgtttgtcaacttcaataattataatcttggagtgatggatgat
ggaacagtggtgtctgatgttgaacttcctccttgggccaaaacctcggaagaatttgtt
cgcataaacagattggccctggagagtgaatttgtttcctgccagcttcaccaatggata
gaccttatttttggctataagcagcaaggaccagaggcagttcggtccctcaatgtgttc
tactacttgacctatgagggagctgtcaatctgaacgcagtcactgatcctgtactgaga
gaggctgttgaagctcaaatccgaagttttggacagacgccctctcagctcctcatagag
ccccatcctcccaggggctccgccatgcaagtgagtccattgatgttcacagaccaagcc
cagcaggacgtcatcatggtcctaaagtttccctccaactctcctgtcactcatgtggca
gccaacacccagcctgggttgatgaatcctgctgtgatcacagtcactgctagcaggctc
ttcgctgtgaacaagtggcacaatcttcccgctcatcaaggtgctgtgcaagaccagcca
taccagctgccagtggaaatcgatcctctcatagccaataatacaggaattcacaggagg
caaatcgccgaccttttagaccaaagtattcaagtccactcccagtgctttgtcattacg
tctgacaaccgctatattctcatctgtggcttctgggacaagagcttccgagtctactcc
acagacacaggcaaattgatccaagtggtgtttggccattgggatgttgtcacttgcctc
actcgttctgagtcatatattggaggaaattgctacattctctcgggctcacgtgacgca
acccttctgctctggtactggaatggaaaaagcagtggcattggagataacccaggcagc
gagaccacgactccccgggccattttaacaggtcatgactacgagatcacctgtgcggcc
gtctgtgcagaactgggcctggtgctgagcggctctaaagagggaccatgtctcatccat
tccatgaatggcgacttgctgaggaccctggatgccccagaaaactgcctgaagccaaga
ctcatccaggcttcaagagaaggccattgtgttgtcttctatgagagcggctgcttctgt
gcctttagtgtcaatgggaagctgcaggccaccgtggacactgatgataacatcagggct
atgcagttgagccgtgatgggcagtacctgctcaccggaggagaccacggggtggtcgtg
gtctggcgggtggcagacctcaagcagctcttcacctacccgggatgtgatgctggcatc
cgggccatggccctgtcctacgaccagaggtgcgtcatttccggcatggcctctggcagc
atcgtgctcttctacaacgacttcaaccgctggcaccatgagtaccaaacccgctactga
DBGET
integrated database retrieval system
