Suncus etruscus (white-toothed pygmy shrew): 126003838
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Entry
126003838 CDS
T09902
Symbol
NPC1
Name
(RefSeq) NPC intracellular cholesterol transporter 1
KO
K12385
Niemann-Pick C1 protein
Organism
setr
Suncus etruscus (white-toothed pygmy shrew)
Pathway
setr03265
Virion - Ebolavirus, Lyssavirus and Morbillivirus
setr04142
Lysosome
setr04979
Cholesterol metabolism
Brite
KEGG Orthology (KO) [BR:
setr00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus
126003838 (NPC1)
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
126003838 (NPC1)
09150 Organismal Systems
09154 Digestive system
04979 Cholesterol metabolism
126003838 (NPC1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
setr02000
]
126003838 (NPC1)
Transporters [BR:
setr02000
]
Solute carrier family (SLC)
SLC65: NPC-type cholesterol transporter
126003838 (NPC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NPC1_MLD
NPC1_N
Sterol-sensing
Patched
MMPL
ACR_tran
Motif
Other DBs
NCBI-GeneID:
126003838
NCBI-ProteinID:
XP_049626147
LinkDB
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Position
3:142032029..142086606
Genome browser
AA seq
1278 aa
AA seq
DB search
MSACGRAVGLLLLLISVVQVYSQSCVWYGECGIASGDKRYNCEYSGPPKPLPKDGYDLVQ
ELCPGFFFDNVSLCCDVQQLQALKDNLQLLLQFLSRCPSCFYNVVNLFCELTCSPRQSEF
LNVTETEDYFDPVTNQTKKNVVGLQYYIGESFANAMYNACRDVEAPSSNEKALGLLCGKE
ADACNATNWIEYMFNKDNGQAPFTITPIFSDLPVYGMEPMNNDTKGCDQSVDEVTAPCSC
QDCSIVCGPKPQPPPTPPPWRILGLDAMYVIMWITYMAFLLVFFGAFFALWCYRKRYFVS
EYTPIDSNIAFSVNASDRGEASCCDPLGATFEGWLRRLFTQWGSFCVRNPGVVLFFSLAF
IGACSSGLVFVRITTNPVDLWSAPNSQARLEKQYFDTHFGPFFRTEQLIIRAPNTSAHIY
EPYPSGSDVPFGPPLDIEILHQVLELQTAIENITASYNNETVTLQDICLAPLSPYNQNCT
ILSVLNYFQNSHAILDHKIGDEFFVYADYHTHFLYCIRAPASLNDTSLLHDPCLGTFGGP
VFPWLVLGGYDDQNYNNATALVITFPVNNYYNDTKKLQRTQAWEKEFINFVKNYKHPNLT
ISFTAERSIEDELDRESNSDIYTVVISYAVMFLYISIALGHIKSCRRLLVDSKISLGIAG
ILIVLSSVACALGIFSFIGIPLTLIVIEVIPFLVLAVGVDNIFILVQTYQRDERLQGETL
DQQLGRVLGEVAPSMFLSSFSETVAFFLGALSMMPAVHTFSLFAGMAVFIDFLLQMTCFV
SLLSLDIKRQEKNRLDILCCVDIADDDNTSTQASENYLFQFFKKYYSPFLLKDWMRPIVI
AVFVGILSFSIAVLNKVEIGLDQSLSMPDDSYVVDYFKSLSQYLHAGPPVYFVLQEGHDY
TSLKGQNMVCGGMGCNNDSLVQQIFNAAQMDNYTRIGFAPSSWIDDYFDWIKPQSSCCRV
YNSTDQFCNASVVDPTCLRCRPLTTEGKRRPLGEDFMKFLPMFLSDNPNPKCGKGGHAAY
GSAVNILGNDTGVGATYFMTYHTVLQTSADFIDAMTKARFIADNITKTMGLQEKSYRVFP
YSVFYVFYEQYLTIVDDTIFNLSVSLGAIFLVTVVLLGCELWATVIMCGTIAMILINMFG
VMWLWGISLNAVSLVNLVMSCGISVEFCSHITRAFTVSAKGSRVARAEEALSHMGSSVFS
GITLTKFGGIVVLAFAKSQIFQIFYFRMYLAMVLLGATHGLIFLPVLLSYIGPSINKAKS
LATQERYKGTEREHLLNF
NT seq
3837 nt
NT seq
+upstream
nt +downstream
nt
atgagtgcgtgcggccgggccgtcggcctgctcctgttgctgatctcagtggtgcaagta
tattcacagtcctgtgtgtggtatggagaatgtggaattgcatccggagacaaaagatac
aattgtgaatattctggaccaccaaaaccattgccaaaggatggatatgacttggtgcag
gaactctgtcctggattcttctttgacaatgttagtctttgttgtgacgttcagcagctt
caggcactaaaagataacctgcagctgcttctgcagttcctgtccagatgtccatcttgc
ttttataacgtcgtgaacctgttttgtgagctgacatgtagccctcgacaaagtgagttt
ctgaatgtgactgaaactgaagattattttgatcctgttacaaaccaaacgaagaagaac
gtggtagggctacaatactatattggagagagttttgccaatgccatgtacaatgcctgc
cgagatgtggaagccccttcaagtaatgagaaagcccttggacttctgtgtgggaaggaa
gctgacgcctgcaatgccaccaactggattgagtacatgttcaacaaggacaacgggcag
gctcctttcaccatcacacccatcttttcagacctgccagtctatggtatggagcccatg
aacaatgacaccaaaggttgtgaccagtccgtggatgaggtcacggcaccatgcagctgc
caggactgctccatagtctgtggccctaagccacagcccccacccactcctcctccctgg
agaatcctgggcctggacgccatgtatgtcattatgtggataacctacatggcatttctg
ctggtgttttttggagcattttttgctttatggtgctacagaaaacggtattttgtctcc
gaatacacccctattgatagcaatatagcattctccgtgaacgccagcgacagaggggag
gcatcctgctgtgatcccctgggcgcgaccttcgagggctggctgaggcgcctcttcacc
cagtggggctcattctgtgtccgcaaccccggtgtcgtcctcttcttctctctggccttc
atcggggcatgttcttcaggcctggtgtttgtgcgcatcaccaccaacccagttgacctc
tggtctgcccccaacagccaggcccgcctggagaaacagtacttcgacacccattttggt
cccttcttccgcacggagcagctcatcattcgagcccccaacaccagtgcacacatttac
gagccttatccatcaggatctgatgtgccctttggaccacccctggacatagagattttg
caccaggttcttgagttacaaacagccatcgagaacattactgcctcttacaataatgag
acagtgactcttcaagatatttgcctggctcctctatcaccttataatcagaactgtacc
atcctgagtgtgttgaattacttccagaacagtcatgccattctggaccacaagataggg
gatgaattttttgtgtatgcggactaccacactcacttcctgtattgtatacgggctcct
gcctctctgaatgacacaagtcttctccacgatccttgtttggggacattcggcggacct
gtgttcccttggcttgtcttaggaggctacgatgatcaaaactacaataatgccacagcc
cttgtgatcacttttcctgtcaataattactataatgatacaaagaagctccagagaaca
caggcctgggaaaaagagtttattaattttgtgaaaaattacaagcatccaaacctgacc
atttctttcactgctgaacggagcattgaagatgaacttgatcgtgaaagcaacagtgat
atctacactgttgtaatcagctatgctgtcatgttcctgtatatatctatagccctgggc
catatcaaaagctgtagacggcttctggtggattctaaaatctccctcggcattgcgggt
atccttatcgtcctaagctccgtggcatgtgctctgggcatcttcagtttcatcgggatc
ccccttaccctcattgtgattgaagtaatcccctttctggtgctggctgttggggtggac
aacatcttcattctggtccagacctaccagagagatgaacgccttcaaggagagaccttg
gaccagcagctgggcagggtcctcggggaggtggctcctagcatgttcctgtcttccttc
tcagagacggttgcctttttcttaggggctctctccatgatgccagctgtgcacaccttc
tcgctgttcgccgggatggcggtcttcatcgacttccttctgcagatgacctgctttgtg
agtcttctgagcttggacattaagcggcaggagaaaaaccgactggacatcctctgttgt
gtcgatattgctgacgatgacaacacaagcacccaggcctcagagaactacttgtttcag
ttcttcaaaaagtactactcaccgttcctgctcaaggactggatgcggccaattgtgatc
gcagtatttgtgggcattctgtcattcagcatcgctgtcctgaacaaagtagaaattgga
ctggatcagtctctttcaatgccagatgactcctacgtggtggattatttcaagtcgctc
agtcagtacctgcacgcaggccctcccgtctacttcgttctgcaggaagggcacgactac
acctctctgaaggggcagaacatggtgtgcgggggcatgggctgcaacaatgactccctg
gtgcagcagatattcaatgcagcgcaaatggacaactacactcgcataggctttgcaccc
tcgtcctggatcgatgattattttgactggattaagccacagtcatcttgctgccgggtc
tacaacagcacggaccagttctgcaacgcctcagtggtggaccctacctgcctgcgctgc
aggcctctgaccacagaaggcaaacgacggcccctaggagaagactttatgaagttcctg
cctatgttcctttctgacaacccaaaccccaagtgtggcaaagggggccatgcggcttat
ggttcagcagtgaacatccttggtaatgacacaggtgtgggagccacatactttatgaca
taccacactgttctccagacgtctgctgactttatcgatgccatgacaaaggcccgcttc
atcgctgataacatcaccaagaccatgggcctgcaagaaaagagttaccgtgtatttcca
tacagcgtgttctatgtcttctacgagcagtacctgaccatcgtagacgacaccatcttt
aacctcagcgtgtccctaggcgccatctttttggtgaccgtggttctcctgggctgtgaa
ctgtgggccacagtgatcatgtgtggcaccattgccatgatcctcatcaacatgtttggc
gtcatgtggctttggggtatcagcctgaatgcggtgtctttggtcaatctggtgatgagc
tgtggcatttccgtggagttctgcagccacatcacgagagcattcaccgtgagtgcgaaa
ggcagccgtgtggcacgggcggaagaggctctgtcccacatgggcagctccgttttcagt
ggaatcacactaacaaaattcggaggaattgtggtattagcctttgccaaatctcaaatt
ttccagatattttacttcaggatgtatttagcaatggtcttgctaggagccactcatgga
ctaatattcctccctgtcttactcagttatataggaccatcaataaataaagccaaaagt
ctggccactcaggagcgatacaaagggacagagcgagaacatctcctgaatttctag
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integrated database retrieval system
