Suncus etruscus (white-toothed pygmy shrew): 126005816
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Entry
126005816 CDS
T09902
Symbol
FDFT1
Name
(RefSeq) squalene synthase isoform X1
KO
K00801
farnesyl-diphosphate farnesyltransferase [EC:
2.5.1.21
]
Organism
setr
Suncus etruscus (white-toothed pygmy shrew)
Pathway
setr00100
Steroid biosynthesis
setr01100
Metabolic pathways
Module
setr_M00101
Cholesterol biosynthesis, FPP => cholesterol
Brite
KEGG Orthology (KO) [BR:
setr00001
]
09100 Metabolism
09103 Lipid metabolism
00100 Steroid biosynthesis
126005816 (FDFT1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
setr01006
]
126005816 (FDFT1)
Enzymes [BR:
setr01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.21 squalene synthase
126005816 (FDFT1)
Prenyltransferases [BR:
setr01006
]
Terpene biosynthesis
Squalene/phytoene synthase
126005816 (FDFT1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SQS_PSY
Octopine_DH
Motif
Other DBs
NCBI-GeneID:
126005816
NCBI-ProteinID:
XP_049627083
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Position
4:complement(102377060..102391007)
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AA seq
417 aa
AA seq
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MEFVKCLGRPDEFYNLLRFRMGGRSKVMPKVDLDRLSSSMKTCYKYLNQTSRSFAAVIQA
LDEELRNAICIFYLVLRALDTVEDDMSIPLAKKVPMLQNFHLYLYEPDWCFLDSKEKHRQ
VLEDFPTISLEFRNLAKVYQAVISETCQRMGNGMAEFLEKKVTSVQEWNTYCHYVAGLVG
IGLSRLFSNSGLEDPLCGQDTLIANSMGLFLQKTNIIRDFLEDLQDGRVFWPKEVWGKYI
QRLEDFPKPENLKLAVQCLNELVTDALQHVPDVLLFLSRLRNQSLFNFCAIPQVMAIATL
AACYNNEHVFKGVVKIRRGQAVTLMMDATNLPAVRAIFQQYTDEIYQKAPHSDPSFAKTT
QLISMVRTQNFASCQLVPRSQNLPLYLSCAMLLVALSWQYLSTMAQVTGDYVQGGEH
NT seq
1254 nt
NT seq
+upstream
nt +downstream
nt
atggagttcgtcaaatgcctggggcgccccgatgagttctacaacctgctgcgcttccgg
atggggggccggagtaaagtgatgcccaaggtggacctggacaggctcagcagcagcatg
aaaacgtgctacaagtacttgaaccagaccagccgcagcttcgcggctgtcatccaggcg
ctggacgaggagctgcgcaatgctatctgcattttctacttggtgcttcgtgctctggac
acggtggaagacgacatgtccatccccctggccaagaaggtccctatgctgcagaacttt
cacttgtacctgtatgagcctgactggtgcttcctggacagcaaggagaagcatcgccaa
gtgctagaggactttcccacgatctccctagagtttaggaacctggccaaggtgtaccag
gctgtgatttctgaaacgtgccagcgcatgggcaatgggatggccgagttcctggagaag
aaagtgacttcggtgcaggagtggaacacgtactgccactatgtcgccggcctggtgggc
attggcctgtcccgcctgttctcaaactcggggctggaggacccgctgtgcggccaggac
acactgattgccaactccatgggcctcttcctgcagaagaccaacatcatccgcgacttc
cttgaggatctccaggacggccgggtgttctggccaaaggaggtatggggcaagtatatt
cagcgactggaggatttccctaaaccagagaacctgaagctggctgtgcagtgtctcaat
gagctagtcaccgacgcactgcaacatgtccctgatgtgctactcttcctgtcacgcttg
aggaaccagagcttgttcaacttctgtgccatcccacaggtcatggctattgccacgcta
gctgcctgctacaacaacgaacatgtgttcaaaggggtggtgaagatccgcagggggcag
gctgtaaccctgatgatggatgctactaacctgcctgccgtcagggccatattccaacag
tacactgatgagatctatcagaaggccccccactcggacccatccttcgccaagacgacg
cagctcatctccatggtccgcacgcagaactttgccagctgccagctggtacccagaagc
cagaacctgcccttgtacctgtcctgcgccatgctcctggtcgccctcagctggcagtac
ctgagcaccatggcccaggtcacgggggactatgtgcagggcggggaacactga
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