KEGG   Suncus etruscus (white-toothed pygmy shrew): 126005927
Entry
126005927         CDS       T09902                                 
Name
(RefSeq) LOW QUALITY PROTEIN: TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
setr  Suncus etruscus (white-toothed pygmy shrew)
Pathway
setr03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:setr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    126005927
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:setr03021]
    126005927
   03036 Chromosome and associated proteins [BR:setr03036]
    126005927
Transcription machinery [BR:setr03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     126005927
   Coactivators
    SAGA/TFTC/STAGA complex
     126005927
Chromosome and associated proteins [BR:setr03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     126005927
    STAGA complex
     126005927
    TFTC complex
     126005927
    SAGA complex
     126005927
    SLIK complex
     126005927
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_CAF1B_HIR1 Beta-prop_EML_2 WD40_MABP1-WDR62_2nd Beta-prop_TEP1_2nd EIF3I TFIID_NTD2 Beta-prop_WDR90_POC16_2nd WDR55 Beta-prop_SCAP WD40_MABP1-WDR62_1st Beta-prop_EML Beta-prop_TEP1_C WDR90_beta-prop_4th Beta-prop_WDR75_1st ANAPC4_WD40 Beta-prop_IFT122_1st Beta-prop_RIG_2nd NBCH_WD40 Beta-prop_SPT8 Beta-prop_IFT140_1st Beta-prop_HPS5 Beta-prop_Vps41 Beta-prop_EIPR1 PEP5_VPS11_N Beta-prop_WDR75_2nd ODR4-like Ge1_WD40
Other DBs
NCBI-GeneID: 126005927
NCBI-ProteinID: XP_049627206
LinkDB
Position
4:37720324..37722310
AA seq 585 aa
MKRVRTEQIQMAVSCYLKRRQYVDSDGPLKQGLRLSQTAEETAANLTVQSESGCANIMSA
APCQAEPQQYEVQFGRLRNFLTDSDSQHSREVMPLPYPLXYLHLNLVQNSPKSTVESFYS
RFHGMFLQKDVIEQLQTTQTIQDILSNFKLRAFLDNKYVVRLQEDSCNYLICHLQSDNNT
VLCKVLTLHIHLDVQPAKRTDYQLYASGSSSRSDGNGLEPTDIPTPILQNEAALEVLQES
IKRVKDAPPSLTTICFYAFYNTEHLLNTAEISPDSKLLAAGFDNSCIKLWSLXSKKLKSK
PHQVDISRIHLACDILEEEDDEDDNAGTEMKILRGHCGPVYSTRFLTDSTGLLSCSEDMS
IRYWDLGSFTNTVLYQGHAYPVXXDLDISPYGLYFASGSHDRTARLWSFDRTYPLRIYAG
HLADVDCVKFYPNSNYLATGSTDKTVRLWSAQQGNSVRLFTGHRGPVLSLAFSPNSKYLA
SAGEDQRLKPWDLASGIFYKELRGHTYNITSLTFSPDSSLIASASMDNSVRVWHTRNTYC
SAPADGSSSELVGVYTGQMSNVLSVQFMACNLLLVTGITQENQEY
NT seq 1758 nt   +upstreamnt  +downstreamnt
atgaaacgagtgcgcactgaacagattcagatggcagtgtcctgctacctcaaacgccgg
caatacgtggactcagacggtcccctcaaacaaggactgcgactttctcagacagctgaa
gagacggcagccaatcttacagttcaatcagaatctggttgtgccaacataatgtctgca
gctccatgccaggcagagccccaacaatatgaagtacaatttggacgactaaggaatttt
ctcactgattctgattcccaacatagccgtgaagtaatgcctcttccctatcctctcntt
tacctccatctcaacctggttcagaacagtccaaagagcacagtggaaagtttttacagc
cgcttccatggaatgtttctacagaaggatgtcattgagcagctacagaccactcaaacc
atccaggacatcctgtctaacttcaagcttcgagcattcctagataacaaatatgttgtc
cgtctccaagaagatagctgcaactaccttatctgccacctccagagtgacaacaatact
gttctgtgcaaagtcctcaccttgcatatccatcttgatgtgcagcctgccaagagaact
gactaccagctgtatgccagtggcagttcctcacgaagtgatggcaatggcttagagcca
actgatatacctacccctattcttcaaaatgaggcagctctggaagtcttgcaggagagc
attaaacgtgttaaggatgcccctccctctcttaccaccatctgtttctatgccttctat
aatacagaacatctgttgaatactgcagaaatctccccagatagcaagttgcttgctgct
gggtttgacaactcctgtattaaattgtggagtttatgatccaagaagttaaaatcaaaa
ccccatcaagttgatatttcccgcattcacttggcttgtgatattttggaagaggaggat
gatgaggatgacaatgcaggcacagaaatgaagatactacggggacactgtggaccagtg
tacagtacgaggtttctcacagacagcacagggttgctctcttgttcagaagacatgtcc
attaggtactgggaccttgggagtttcaccaacactgtgttataccaaggacatgcctac
cctgtatgataggacctggacattagcccttacggcttgtacttcgccagtgggtctcat
gatcgcactgcaaggctgtggtcatttgatcggacgtaccctctgagaatatatgcagga
cacctggcagatgtggactgtgttaaattctaccctaattcaaactatttagctacaggc
tctactgacaaaactgttcgactatggagtgctcagcagggaaactcggtgaggctcttc
acagggcaccgtggtcctgtgctttctcttgccttctctcccaatagtaagtacttggca
tcagctggtgaggatcagcgtttgaagccatgggacttggcctctgggattttttataaa
gaactgcgaggccatacatacaatattaccagcctcaccttcagtccagacagtagcctg
atagcctctgcatccatggacaactctgtgcgtgtctggcacactagaaacacttactgc
agtgcacctgctgatggctcctccagtgaacttgtgggtgtgtatactgggcagatgagc
aatgtactgagtgtccagttcatggcctgtaatctccttctagtgacaggaatcacacaa
gaaaatcaggaatattaa

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