Suncus etruscus (white-toothed pygmy shrew): 126006039
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Entry
126006039 CDS
T09902
Symbol
LIG3
Name
(RefSeq) DNA ligase 3
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
setr
Suncus etruscus (white-toothed pygmy shrew)
Pathway
setr03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
setr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
126006039 (LIG3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
setr03400
]
126006039 (LIG3)
Enzymes [BR:
setr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
126006039 (LIG3)
DNA repair and recombination proteins [BR:
setr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
126006039 (LIG3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
LIG3_BRCT
zf-PARP
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
126006039
NCBI-ProteinID:
XP_049627332
LinkDB
All DBs
Position
1:168342489..168368706
Genome browser
AA seq
1007 aa
AA seq
DB search
MTLTFKTLFPPTLRALCRKEPCLRKQHHWPDNKQFGLWAETGLLHGCFLSQRRKPVGLSQ
GANIRLWAIQQVFLPGSHVGLCSGPCEMAEQRFCVDYAKRGTAGCKKCKEKIVKGVCRIG
KVVPNPFSESGGDMKEWYHIKCIFEKLERARATTKKIEDLTELEGWEELEDNEKEQIRQH
ITELSSKATGTPKKKAVVQTKLTATGQVTSPTKGSSFVTNTNPRKFSGFSAKPNNSGEGL
ISPTPKTSLSSSKCDPKHKDCLLREFRKLCAVVAENPSYNTKTQIIQDFLRKGSARDGFH
GDMYLTVKLLLPGVIKSVYNLNDKQIVKLFSRIFNCNPDDMARDLEQGDVSETIRVFFEQ
SKSFPPAAKSLLTIQEVDEFLLQLSKLTKEDEQQQALQDIASRCTANDLKCIIRLIKHDL
KMNAGAKHVLDALDPNAYEAFKASRNLQDVVERVLRNQQENEPGQRRTLSVQASLMTPVQ
PMLAEACKSIEYAMKKCPNGMFSEIKYDGERVQVHKNGDHFSYFSRSLKPVLPHKVAHFK
DFIPKAFPGGHSMILDSEVLLIDNKTGKPLPFGTLGVHKKAAFQDANVCLFVFDCIYFND
VSLMDRPLWERRKFLHDNMVEIPNRIMFSEMKQVTKGSDLADMINRVIREGLEGLVLKDM
KGTYEPGKRHWLKVKKDYLNEGAMADTADLVVLGAFYGQGSKGGMMSIFLMGCYDPHSQK
WCTVTKCSGGHDDATLARLQKELDMVKISKDPSKIPSWLKINKIYYPDFIVPDPKKAAVW
EITGAEFSKSEAHTADGISIRFPRCTRIRDDKDWKSATNLPQLKELYQLSKERADFTVVA
GDEGSSSTGGSSGENGGASESPHKAPTTKKAGERLSSPKSKGGKKGEGDKWGTKHGPVNV
HEKQAAKSPMGLGKKRKAEVAETETLSQTKVLLDIFTGVRLYLPPSTPDFSRLKRYFVAF
DGDLVQEFDMASATHTLGSRDQNPEAQQVSPEWIWACIRKRRLVAPC
NT seq
3024 nt
NT seq
+upstream
nt +downstream
nt
atgactttgactttcaagaccctctttccaccaaccctccgtgccctctgtcgaaaagag
ccgtgcctccggaaacagcaccactggcctgacaacaagcagttcggtctgtgggcagag
acaggtctgcttcatgggtgcttcctctctcagagaagaaagcctgttgggttatcccaa
ggagcaaatataagactatgggctatacagcaggttttcttgccaggatcgcatgtggga
ctgtgcagtggcccctgtgagatggcagagcaacgcttctgtgtggactatgccaaacgg
ggcacagccggctgcaaaaaatgcaaagaaaagattgtgaaaggtgtctgccggattggc
aaggtagtccccaatcccttctcagagtctgggggtgatatgaaagagtggtaccacatt
aaatgcatattcgagaaactggagcgggcccgggccactaccaaaaaaattgaagacctc
acagaattagaaggctgggaagaactggaagataatgaaaaggaacagatacgtcagcat
attacagaactgtcttctaaggcaacaggcacaccaaagaagaaagctgttgttcagaca
aagttgacagccactggccaggtgacctctccaaccaaaggatcctcatttgttaccaat
accaatccccggaaattttctggcttttcagccaaacccaacaactctggggaaggcctt
ataagccctactcctaagacaagtttgtcctcaagcaaatgtgatcctaagcacaaagac
tgtttgctacgcgagtttcgcaagttgtgcgccgtggtggctgaaaatcctagctacaac
acaaagacccaaatcatccaagacttcctgaggaaaggctcagcaagagatggattccat
ggtgacatgtacctaacagtgaagctactgctgccaggtgttattaagagtgtttacaac
ttgaatgataagcaaattgttaagctcttcagccgtatttttaattgcaacccagatgac
atggcacgagacctagaacagggtgacgtgtcagagacaattagagtcttctttgagcag
agcaagtctttccccccagctgccaagagcctccttaccatccaggaagtggatgaattc
ctccttcagctctccaagctcacaaaggaggatgagcagcaacaggccctgcaggacatt
gcttctcggtgtactgctaatgaccttaagtgcatcatcaggctaatcaaacatgacctg
aagatgaacgcaggtgcaaagcatgtgttagatgccctcgaccctaatgcctatgaagct
ttcaaagcttcacgcaacttacaggatgtggttgaaagggtcctccgcaaccagcaggag
aacgagcctggccaaagacggaccctgagtgttcaggcctcactgatgacccccgtacag
cccatgctggctgaggcctgcaaatccattgagtatgctatgaagaagtgtcccaatggc
atgttctcagagatcaagtatgatggggagcgagtacaggtgcataagaatggagaccac
ttcagctacttcagtcgcagcttgaagcctgtcttgcctcacaaggtggcccattttaag
gactttatccccaaggcattccctggaggccacagcatgatcttggactcagaggtgctc
cttattgacaacaagacaggcaaaccactgccctttggaactctgggagtacataagaaa
gctgctttccaggatgctaatgtttgcttgtttgtttttgactgtatctacttcaatgat
gtcagcttgatggacagacctctatgggaaagacgtaagtttcttcatgacaacatggtt
gagattcccaatcgtatcatgttctcagaaatgaagcaagtcacgaaaggttccgatttg
gctgacatgataaaccgggtgatccgggagggtctggaagggctggtgctaaaggacatg
aagggcacgtatgagcctggaaagcggcactggctgaaagtgaagaaagactatttgaat
gagggtgccatggctgacacagctgacctggtggtcctcggggccttttatgggcaaggg
agcaaaggtggcatgatgtccatcttcctcatgggctgctatgacccacatagccaaaag
tggtgcacagttaccaagtgttctggaggccatgatgatgccacactcgcccgtctgcag
aaggagctggacatggtgaaaattagcaaggatcccagcaaaatacccagctggctgaaa
atcaacaagatctactaccctgacttcattgtcccagatccaaagaaagctgctgtatgg
gagatcacaggggctgaattctccaaatccgaggctcacactgccgatggcatctccatc
cgattccctcgatgcacccgcatccgagatgacaaagactggaaatctgccactaacctc
ccccaactcaaggagctgtaccagctgtcgaaagagagggcagacttcactgtggtggcc
ggagatgaaggaagctcctctacagggggcagcagcggagagaatgggggtgcctcagaa
tcccctcacaaggctcccactaccaagaaggcaggagagaggctgagcagccccaagagc
aaaggcggtaaaaagggggaaggcgacaagtggggcacaaagcatggccctgtgaatgtg
catgagaaacaagctgcaaagtctcccatggggctgggaaagaagcggaaggctgaggtg
gctgagactgagactctgagccaaaccaaggtactgctggacatcttcactggcgtgcgg
ctctacctgccaccctccactcccgacttcagccgtctcaaacgctactttgtggctttt
gatggggacctggtacaggaatttgacatggcttcagccacacacacactggggagcagg
gaccagaaccctgaggcccagcaggtctccccagaatggatttgggcatgcatccggaaa
cggagactagtagccccctgctag
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