Suncus etruscus (white-toothed pygmy shrew): 126006416
Help
Entry
126006416 CDS
T09902
Symbol
SYNPO
Name
(RefSeq) LOW QUALITY PROTEIN: synaptopodin
KO
K21112
synaptopodin
Organism
setr
Suncus etruscus (white-toothed pygmy shrew)
Pathway
setr04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
setr00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
126006416 (SYNPO)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Calsarcin
Motif
Other DBs
NCBI-GeneID:
126006416
NCBI-ProteinID:
XP_049627788
LinkDB
All DBs
Position
4:complement(153932076..153957088)
Genome browser
AA seq
701 aa
AA seq
DB search
MEGCSEETRLLRHLEKVASEEEEVPLGGLFKGDAALLTANGLHLSQNREGPEPRGPSRPL
QFHRTDVSSPGGRWPTKTFPSPSTTLITPASNSNHILPATDVNQNLSATVIQQNLPLSSV
HNNSLEAQPLPNRSVPDSQASTPSAEGQPQEAAGETHHTLLMEKVSTPPTTTSTFCKDAP
PISSFVPPGPDLMSSSLVINVQPRASMALEEQEVPGQAPPTTPTKLHSELHLTLAKSSPV
INRTARPFGIQAPGSPGRSPMLERRYLGEKAEAPQLSTMADRSPRPQRHVMSPSPMLGRR
SMGQQSPALERRPLGNFTPPPTYAETLSTAPPPSRVRSPPSYSALYPSSDPKLSHPKGQA
VPASKTGILEESMARRGSRKSMFTFVEKPKVTPNPDLLDLVQTADEKRRQRDQGDVAVEE
EPFALGAEASNFQAELPPRDRTSPTAAEETAPEWASCLKSPRIKAKPKPKPNQNLSEASG
KGAELYARRQSRMEKYVIESSGHAELARCPSPTMSLPSSWKYSTSAPGGFRVASLSPART
PPASLYHGYLPENGVLCPEPTKQPPYQLRSSLFVLSPLKEPAKALPRGSSPRAASPRAAS
SRSASPAKPSSLDLVPSLPKGAFPISPVLPRASRSSPGLYTQSGQDGLMPIAGSPAYSTD
ISPVSPSRAWSPRAKQAPRPSFSTRNAGIEAQVWKPSFCFK
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
atggaggggtgctcagaggaaaccagactgcttcggcatctggagaaggtggcaagtgag
gaggaggaggtacctttgggtggtttatttaaaggagatgcagccctgctgacggccaat
ggactgcacctttcacagaaccgagagggcccagaaccaagaggccccagcaggcccctt
caattccaccggactgatgtctccagcccaggtggcagatggccaaccaaaacctttcca
tcacctagtaccacactcatcacaccagcttctaacagcaaccacatcttgccagctaca
gatgtcaatcagaacctgtcagccactgtcatccaacagaatctgcccctctccagtgtc
cacaacaattctctggaggcccagcctctaccaaacagatcagttccagattcccaggcc
agcaccccaagtgctgaagggcaaccccaggaggcagctggggagactcatcacacactt
cttatggagaaggtctctactccacccactactaccagcaccttctgcaaggacgcccct
cccatctccagctttgtgcccccaggtccagacctcatgtccagctcccttgtcatcaat
gtgcagcccagggcctccatggcgttagaagagcaggaggtacctgggcaggcaccaccc
accactcccaccaagctgcacagtgagcttcacctcacgctagccaagtcttcacccgtg
attaacagaacggccaggccctttgggatccaggctccaggctcccctggtcggagcccc
atgctggaaagacggtatcttggggagaaggctgaggctcctcaactctccaccatggca
gacaggagccctcggccacagagacacgtgatgtcacctagccccatgctgggacggagg
tctatgggacagcagagccctgccctggagagacgccccttagggaatttcaccccaccc
cctacctatgcagagaccttgtccacagcacctcccccttcccgagtgaggtctcccccc
tcttactctgccctgtaccctagctctgaccctaagctctctcacccaaaaggtcaagca
gtccctgccagcaagacaggcatcctggaggagtcgatggcccgcaggggcagccgaaaa
tccatgttcacctttgtagagaaacccaaggtgaccccaaacccagatctgctggacttg
gtccagacagctgatgagaagcgacggcagagagaccagggggacgtggctgtggaggaa
gagccctttgctctgggggctgaggcttccaacttccaggctgagctaccaccccgggac
aggaccagccctacagctgcagaggaaacagcccctgagtgggcctcgtgtctcaagtct
ccacgcatcaaggccaagccaaagcccaaacccaaccaaaacctctcagaggcctctggc
aagggggctgagctctatgcccgccgccagtctcggatggagaagtacgtcattgaatct
tctggccatgcagagctggcccgatgcccttcccctaccatgtccctgccgtcatcctgg
aagtactctaccagtgctcctgggggcttccgtgtggcctccctcagcccagctcggaca
ccgcctgcctctctctaccatggatacctgccggagaatggggtcctgtgcccagagcct
accaagcaaccaccctaccagctgcggtcctcactcttcgtcctctccccactcaaggag
cctgccaaagccttgcccaggggctcctcacccagggccgcttcaccgagggccgcctca
tccagatccgcatccccggccaagccaagctctctggacctggtgcccagcctgcccaag
ggggccttccccatatcaccggtcctgcctcgggcctcccgctcctcacctggtctctac
acccaatctggccaggatggtctgatgcccattgccgggagccccgcctacagcactgac
atctccccggtgtcgccttccagggcatggtctcctcgagccaagcaggcgcctcggccc
tccttctccactcgcaacgctgggattgaggctcaggtgtggaagccatccttttgcttc
aagtaa
DBGET
integrated database retrieval system
