Suncus etruscus (white-toothed pygmy shrew): 126006549
Help
Entry
126006549 CDS
T09902
Name
(RefSeq) pre-mRNA-processing factor 17-like isoform X1
KO
K12816
pre-mRNA-processing factor 17
Organism
setr
Suncus etruscus (white-toothed pygmy shrew)
Pathway
setr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
setr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
126006549
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
setr03041
]
126006549
Spliceosome [BR:
setr03041
]
Complex C
Other components
Step II factors
126006549
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WDR55
EIF3I
Beta-prop_EML_2
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_C
Beta-prop_EIPR1
WD40_RFWD3
Beta-prop_RIG_2nd
Beta-prop_WDR75_1st
ANAPC4_WD40
Beta-prop_DCAF4
WD40_MABP1-WDR62_1st
Beta-prop_IFT122_1st
Beta-prop_SPT8
WDR90_beta-prop_4th
Beta-prop_SCAP
Beta-prop_NWD2_C
WDR54
Motif
Other DBs
NCBI-GeneID:
126006549
NCBI-ProteinID:
XP_049627979
LinkDB
All DBs
Position
4:complement(12238322..12240295)
Genome browser
AA seq
579 aa
AA seq
DB search
MSAAIAALAASYGSGSGSGTGSDSESLRCPLSADDSLMHLTKSPLAKPFLAVAVDSAPEV
AIKEDLETGVHLDPAVKEVKYNPTYETMFTPEFGPENHFRTQQMAAPRNMLSGYADPAHI
NDFIFEQQRRTFAPYGCALYPSLDNHQVTTKYIGSIEEAEKNQGLTIFETGQKKTEKRKK
FKENDASNIDGFLGPWAKYVDEKDVAKPSEEEQKELDEITAKRQKKGKQEEEKLGEEKTI
LHVKGMYDYQGRSYLHTPQDVGVNLRSTIPPEKCYLPKKQIHVWSGHIKGVSAVRLFPLS
GHLVLSYSMDCKIKLWEVYGDRRCLQTFIGHSKAGRDFCFNTAGTQFLSAAYDRYLKLWD
TETGQCISRFTNQKVPYCVKFNPDEDKQNLFVTGISDKKIVQWDIRSGEIVQEYDRHLVA
VNTIVFVDENRRFVSTSDDKSLRVWEWGIPVDFKYIAEPTMQSMPAVTLSPNGKWLGCQS
MDNHILIFGAQNRFRLNKKKTFKGHMVAGYACQMDFSPDMNYVISGDGNGKLNIWDWKTT
KLYSRFKAHDKVCIGAVWHPHETSKVITCGWDGLIKLWD
NT seq
1740 nt
NT seq
+upstream
nt +downstream
nt
atgtcggcagcaattgcagctctggctgcttcctacgggtcaggttcggggtccgggaca
ggctcggacagcgaaagcttaaggtgtccgctctcagccgatgactctttgatgcacttg
actaaatcgcctttggccaagcctttcttagcagtggcggtggattcggctcctgaggtg
gcaattaaggaagatctggagactggggttcatcttgaccctgccgtcaaagaagttaag
tataacccaacctatgagacaatgtttactcctgagtttggaccagaaaatcactttagg
acacagcaaatggctgcccctagaaatatgctttctggatatgctgatcctgctcatatc
aatgattttatatttgaacagcaaagaagaacttttgccccatatggttgtgcattatac
ccttcattggataatcatcaagtaactactaaatatattggttctatagaagaagctgaa
aaaaatcaaggcttaactatttttgaaactggtcagaagaaaacagaaaagagaaaaaag
ttcaaagaaaatgatgcttctaatattgacggtttcttgggaccttgggcaaaatatgtg
gatgaaaaagatgtagccaagccttcagaagaagaacaaaaagaattggatgaaatcaca
gcaaagaggcagaaaaagggcaaacaagaagaggagaaacttggagaggaaaagacaatc
ttacacgttaaaggaatgtatgactatcagggcaggtcctatcttcacacacctcaggat
gttggtgttaatctgcgatcaacaataccacctgagaaatgttaccttcccaagaaacaa
attcatgtgtggtctggacacatcaagggcgtcagtgcagtcagattatttcctctctct
ggccacctagtgttgtcgtattccatggactgtaaaatcaagctgtgggaagtttatgga
gacagacggtgcctgcaaacatttattggtcacagtaaagctggcagggacttctgtttt
aacacagcagggactcagtttctcagtgcagcttatgacagataccttaaactctgggac
actgagacaggacaatgtatatcaagatttacaaatcaaaaagtaccatactgtgtcaaa
tttaatcctgatgaagataagcagaatctctttgtgactgggatctctgataaaaagatt
gtgcaatgggacattagaagtggagaaattgtacaggaatacgatcggcatttggtagct
gtcaacaccattgtttttgttgatgagaataggagatttgtgagcacatctgatgataag
agtttaagagtttgggaatggggaatccctgtggattttaaatatatagcagaacccact
atgcaatctatgcctgcagtgactttatctccaaatgggaaatggctgggatgccaatca
atggacaatcacatattaatttttggagcacagaacagatttagattgaataagaaaaaa
acttttaagggccacatggttgcaggttatgcttgtcaaatggacttttccccagacatg
aactatgtaatttcaggagatggaaatggaaaattaaacatctgggactggaagaccaca
aaactctacagccgatttaaagctcatgataaagtgtgtataggtgctgtgtggcatcct
catgaaacatctaaagtcataacatgtggttgggatggtcttattaaattgtgggattaa
DBGET
integrated database retrieval system
