Suncus etruscus (white-toothed pygmy shrew): 126008757
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Entry
126008757 CDS
T09902
Symbol
PRPF40A
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
setr
Suncus etruscus (white-toothed pygmy shrew)
Pathway
setr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
setr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
126008757 (PRPF40A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
setr03041
]
126008757 (PRPF40A)
Spliceosome [BR:
setr03041
]
Complex A
U1 snRNP components
U1 related factors
126008757 (PRPF40A)
Complex B
126008757 (PRPF40A)
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
FF
FF_PRPF40A
WW
WW_TCERG1
FF_RHG35_4th
WW_2
Motif
Other DBs
NCBI-GeneID:
126008757
NCBI-ProteinID:
XP_049628945
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All DBs
Position
5:complement(50470015..50519730)
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AA seq
956 aa
AA seq
DB search
MRPGTGAERGGLMVSEMESHPPTQGPGDGERRLSGSSLSSGSWVSADGFLRRRPSMGHPG
MHYAPMGMHPMGQRANMPPVPHGMMPQMMPPMGGPPMGQMPGMMSSVMPGMMMSHMSQAS
MQPALPPGVNNMDVAAGATAGAKSMWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQ
LLSKCPWKEYKSDSGKPYYYNSQTKESRWAKPKELEDLEGYQNTIVAGSLITKSNLHAMI
KAEESSKQEECTTSTAPVPTTEIPTTMSTMAAAEAAAAVVAAAAAAAAAAAAANANTSTS
TSNTVGGTVPVAAESEVTSIIATVVDNESAVTISTEEQAQLTSTSAVQDQSVEISSNAGE
ETAKQETVADFTPKKEEEESQPAKKTYTWNTKEEAKQAFKELLKEKRVPSNASWEQAMKM
IINDPRYSALAKLSEKKQAFNAYKVQTEKEEKEEARSKYKEAKESFQRFLENHEKMTSTT
RYKKAEQMFGEMEVWNAISERDRLEIYEDVLFFLSKKEKEQAKQLRKRNWEALKNILDNM
ANVTYSTTWSEAQQYLMDNPTFAEDEELQNMDKEDALICFEEHIRALEKEEEEEKQKGLL
RERRRQRKNRESFQIFLDELHEHGQLHSMSSWMELYPTISSDIRFTNMLGQPGSTALDLF
KFYVEDLKARYHDEKKIIKDILKDKGFIVEVNTTFEDFVAIISSTKRSTTLDAGNIKLAF
NSLLEKAEAREREREKEEARKMKRKESAFKSMLKQATPPIELDAVWEDIRERFVKEPAFE
DITLESERKRIFKDFMHVLEHECQHHHSKNKKHSKKSKKHHRKRSRSRSGSDSDDDDSHS
KKKRQRSESRSASEHSSSAESERSYKKSKKHKKKSKKRRHKSDSPESDAEREKDKKEKDR
ENEKDRTRQRSESKHKSPKKKTGKDSGNWDTSGSELSEGELEKRRRTLLEQLDDDQ
NT seq
2871 nt
NT seq
+upstream
nt +downstream
nt
atgaggccggggactggagctgagcgcggaggcctcatggtgagtgaaatggagagccat
cctcccacgcagggtcccggggacggggagcggagattatccggctccagcctttcttcc
ggctcttgggtctctgctgacggcttcctgaggagacggccctcgatggggcaccctggc
atgcattatgccccaatgggaatgcacccaatgggtcagagagccaatatgcctcctgta
cctcatggaatgatgccacaaatgatgcccccgatgggagggccaccaatgggacaaatg
cctggaatgatgtcctcagtgatgcctggaatgatgatgtcccatatgtctcaggcttcc
atgcagccagccttaccgccaggagtaaataatatggatgtagcagcaggtgcaacagct
ggtgcaaaatctatgtggactgaacataaatcacccgatggaaggacttactactataat
actgaaacgaaacagtctacttgggagaaaccagatgatcttaaaacacctgcagagcaa
cttctgtctaaatgcccctggaaggagtacaaatctgattctggaaagccttattattat
aactcccaaacaaaagaatcccgttgggcaaaacctaaagaacttgaggatcttgaagga
taccagaataccattgttgctggaagtcttattacaaaatcaaacctgcatgcaatgatc
aaagctgaagaaagcagtaaacaagaagagtgcaccacatcaacagccccagttcctaca
acagaaattccaactacaatgagcaccatggctgctgcagaagcagcagctgctgttgtg
gcggctgcagccgcagcagcagctgctgcggctgcagccaatgccaatacttctacctct
acttctaacactgttgggggaactgttccagttgctgcagagtctgaagtcacttcgatt
attgctactgttgtagataatgaaagtgcagtaacaatttcaaccgaagaacaagcacaa
ctcactagtacctctgctgttcaggatcaaagtgttgaaatatccagtaatgctggagaa
gaaactgcaaagcaggaaactgtagctgattttactcctaaaaaagaagaggaggaaagt
cagccagcaaaaaagacatatacttggaatacaaaagaagaggcaaagcaagcatttaaa
gaattattgaaagaaaagcgagttccatccaatgcttcatgggaacaagctatgaaaatg
atcataaatgacccaagatacagtgcactagcaaaactgagtgaaaaaaagcaggccttt
aatgcttataaagttcaaacagagaaagaagagaaagaagaagcaagatcaaaatataaa
gaggcaaaggaatcttttcagcgttttcttgaaaatcatgagaaaatgacttctacaacc
agatataaaaaagcagaacaaatgtttggagaaatggaagtctggaacgcaatatctgaa
cgtgatcgtctggaaatctatgaagatgttttattctttctttcaaaaaaggaaaaggag
caagcaaaacagttgcgaaaaagaaattgggaagccttaaaaaatatacttgacaatatg
gctaatgtgacatattctacaacttggtctgaagcccagcagtatctaatggataatcca
acttttgctgaagatgaggaattacaaaatatggataaagaagatgcattaatttgcttt
gaagagcatattcgggctttagaaaaagaagaagaagaagaaaaacagaaaggcttgctg
agagaaagaaggcgacagcgtaaaaatagggaatcttttcagatatttttagacgaattg
catgagcatggacagctgcattctatgtcatcttggatggaattgtatccaacaattagt
tctgacattcgattcactaatatgcttggtcagcctggatcaactgcacttgaccttttc
aagttttatgttgaggatcttaaagcacgatatcatgatgagaagaagataataaaagac
atactaaaggataaaggttttatagttgaagttaatactacttttgaagactttgtggca
ataatcagctcaactaagagatcaaccacattagatgctggaaatattaagttggctttc
aatagtttactagaaaaggctgaggcccgtgaacgtgaaagagaaaaagaggaggctcgg
aagatgaaaagaaaagagtctgcatttaagagtatgttgaaacaagctactcctccaatc
gaattggatgctgtctgggaagatattcgggagagatttgtgaaagaaccagcatttgaa
gacataactctagagtctgaaagaaaacgaatatttaaagattttatgcatgtacttgag
catgagtgtcaacaccatcattcaaagaacaagaaacattctaaaaagtctaaaaaacat
cataggaaacgatctcgttctcgatcggggtcagattcagatgatgatgacagccattca
aagaaaaaaagacagcgatcagagtctcgctctgcttcagaacattcttctagtgctgag
tcagagagaagttataagaaatcaaaaaaacataagaagaaaagcaagaagaggagacat
aaatctgattcaccagaatcagatgcagagcgagaaaaggataaaaaagaaaaagaccgg
gaaaatgaaaaagacagaactagacaaagatcagaatcaaagcacaaatcacctaagaaa
aagactggaaaagattctggtaattgggatacttctggcagtgaactaagtgaaggagaa
ttggaaaaacgaagaaggacccttttggagcaactggatgatgatcaataa
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