Suncus etruscus (white-toothed pygmy shrew): 126008892
Help
Entry
126008892 CDS
T09902
Symbol
SF3B1
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
KO
K12828
splicing factor 3B subunit 1
Organism
setr
Suncus etruscus (white-toothed pygmy shrew)
Pathway
setr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
setr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
126008892 (SF3B1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
setr03041
]
126008892 (SF3B1)
03036 Chromosome and associated proteins [BR:
setr03036
]
126008892 (SF3B1)
Spliceosome [BR:
setr03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
126008892 (SF3B1)
Complex B
126008892 (SF3B1)
Complex C
U2 SnRNP specific factors
126008892 (SF3B1)
Chromosome and associated proteins [BR:
setr03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
126008892 (SF3B1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
HEAT_EF3_N
HEAT_ECM29
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
Adaptin_N
UNC45-central
DUF2298
TALPID3
Motif
Other DBs
NCBI-GeneID:
126008892
NCBI-ProteinID:
XP_049629127
LinkDB
All DBs
Position
5:121914124..122264735
Genome browser
AA seq
1304 aa
AA seq
DB search
MAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA
TELEDDDDDYSSSTSLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPPKIADREDEYK
KHRRTMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGE
LKVVNGAAASQPPSKRKRRWDQTADQTPGATPKKLSSWDQAETPGHTPSLRWDETPGRAK
GSETPGATPGSKIWDPTPSHTPAGAATPGRGDTPGHATPGHGGATSSARKNRWDETPKTE
RDTPGHGSGWAETPRTDRGGDSIGETPTPGASKRKSRWDETPASQMGGSTPVLTPGKTPI
GTPAMNMATPTPGHIMSMTPEQLQAWRWEREIDERNRPLSDEELDAMFPEGYKVLPPPAG
YVPIRTPARKLTATPTPLGGMTGFHMQTEDRTMKSVNDQPSGNLPFLKPDDIQYFDKLLV
DVDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFNQILPLLM
SPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNL
AKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLKAVCKSKKSWQA
RHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAIAALAEAATPYG
IESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVMLILIREFQSP
DEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNYRQLVDTTVEL
ANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEEQLIDGILYAF
QEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQAADLISRTAV
VMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMTPPIKDLLPRL
TPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHKKAIRRATVNT
FGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPE
LNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASAVVQHMSLGVY
GFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYCLQGLFHPARK
VRDVYWKIYNSIYIGSQDALIAHYPRIYNDDKNTYIRYELDYIL
NT seq
3915 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagatcgccaagacccacgaagatattgaagcacagatccgagaaatccagggc
aagaaggcagctcttgatgaagctcaaggagtgggccttgactctactggttactatgac
caggaaatttacggtggaagtgacagtagatttgccggctatgtgacatcaattgctgcc
acagaacttgaagatgatgacgatgactactcatcatctacaagtttgcttggtcagaag
aagccaggatatcatgcccctgtggcattgctcaatgatataccacagtcaaccgagcag
tatgacccatttgctgaacaccggccgccgaagattgcagaccgggaagatgagtacaaa
aagcacaggcggaccatgatcatttccccagagcgtcttgatcctttcgcagatggaggg
aagacccctgatcctaaaatgaatgctaggacttacatggatgtaatgagagaacagcat
ttaactaaagaagagagagagattaggcaacaactcgcagaaaaagctaaagctggagaa
ctaaaagtggtcaatggagcagcagcctctcagcctccttcaaagcgaaaacgtcgttgg
gatcaaacagctgatcagactccgggggccactcccaaaaagctgtcaagttgggatcaa
gcagagacccctggacatactccttccttgagatgggatgagacaccaggccgtgcgaag
ggaagtgagactccaggagcaaccccaggttcaaaaatatgggaccctacacctagtcac
acaccagcaggagctgctactcctggacgaggcgatacaccgggccatgcaaccccaggc
cacggaggtgcaacttctagtgctcgcaaaaacagatgggatgagacccccaaaacggaa
cgagatactcctggacatggaagtggatgggcagagacacctcgaactgatagaggtgga
gattcaattggcgaaacaccaactcctggagccagtaaaagaaaatctcgatgggacgaa
acaccagcaagtcagatgggtggaagcactcctgttctgactcctgggaaaaccccaatt
ggcacaccagccatgaacatggccaccccaactccaggtcacataatgagcatgactcct
gaacagcttcaggcctggagatgggagagagaaattgacgagagaaatcgccccctttct
gatgaggaattggatgctatgttcccagaaggatacaaggtacttccccctcccgctgga
tatgttcctattcgaacgccagctcgaaaactgaccgcaacaccaacacctctgggtggt
atgactggtttccacatgcaaactgaagataggacgatgaagagcgttaatgaccaacca
tcaggaaacctaccatttttaaagcccgatgacattcagtacttcgataaacttttggtt
gatgttgatgaatcaacacttagtccagaagagcaaaaagagagaaaaattatgaagtta
cttttaaaaattaagaatggaacacctccaatgagaaaggctgcattgcgtcaaattact
gataaagcacgtgaatttggagctgggcctttgttcaatcagattcttcctctgctgatg
tctcctacacttgaagatcaggagcgtcacttacttgtgaaagtcatcgacagaatattg
tacaaacttgatgacctggttcgaccttatgtgcataagatcctggtggtcattgaacca
ttgttgattgatgaagactactatgctagagttgaaggcagagagatcatttctaatttg
gcaaaggctgctggtctggctactatgatctctaccatgagacctgatatagacaacatg
gacgagtatgtccgtaacacaacggctagagcttttgctgttgtagcctctgccctgggc
attccttcattgctgccctttttaaaagctgtgtgcaaaagtaagaagtcctggcaagca
agacacactggcataaagatcgtccagcaaatagctattctcatgggctgtgccattttg
cctcatctcagaagtttagttgaaatcattgagcacggtcttgtggatgaacagcagaaa
gttcgaaccattagtgctttagctattgctgccttggcagaagcagccaccccgtatggt
attgaatcttttgattctgtcctaaagcctctgtggaagggtatccgccaacatagaggg
aagggtctggctgctttcttaaaagctattgggtatcttatcccgctcatggatgctgaa
tatgccaactactacaccagagaagtgatgttaattcttattcgagaattccagtctcct
gatgaagaaatgaagaaaattgtgctgaaggtggtaaaacagtgttgtggaacagatggt
gtagaggcaaactacattaaaacagagattcttcctcctttttttaaacacttttggcaa
cacagaatggctttggacagaagaaattaccgacagttagttgatactactgtagagtta
gcaaataaagtaggtgcagcagaaattatatccagaattgtggatgatctaaaagatgaa
gctgagcagtacagaaaaatggtgatggagacaattgagaaaatcatgggcaatttggga
gcagctgatattgatcataaacttgaagaacagttgattgacggcattctgtatgctttt
caagaacagaccacagaggactcagtaatgttgaacggctttggtacagtggtcaatgct
cttgggaaacgagttaaaccttacttgcctcagatctgtggtacagttttgtggcgttta
aacaacaaatcagcaaaggtcaggcaacaggcggctgacttgatttctcgaactgcagtt
gttatgaaaacatgtcaagaggaaaaattgatggggcacttaggtgttgtcttatatgaa
tatttgggtgaagagtatcctgaagtattgggcagcattcttggagcactgaaggccatc
gtaaatgtcataggtatgcataagatgaccccaccaattaaagatttgctacctagactt
acccctatcttaaagaacagacatgaaaaagtccaagaaaattgtatcgatcttgttgga
cgaattgctgacaggggtgctgaatatgtatctgcaagagaatggatgaggatttgtttt
gagcttttggagcttttaaaagctcacaaaaaagctattcgcagagccacagtcaacaca
tttggttatattgccaaggccattggtcctcacgatgttttggctacacttctaaacaac
ctcaaagttcaggaaaggcaaaacagagtgtgcaccacagtagcaatcgctattgttgct
gagacatgctcacccttcacagttctgcctgccttaatgaacgaatacagagttcccgaa
ctgaatgttcagaacggagtgttgaagtcactttccttcttgtttgaatatattggtgaa
atgggaaaggactacatctacgcggtaacacccttacttgaagacgctttaatggatagg
gaccttgtacacagacagacagctagtgcggtggtccagcacatgtcccttggagtgtat
ggatttggttgtgaagattctctgaaccacttactaaactatgtatggcccaatgtgttt
gagacatctccccatgtaatccaggcagttatgggagcgttggagggcctgagagttgct
attggaccatgtcgaatgttgcagtattgtttacagggactattccacccagcccgaaaa
gtcagagacgtgtattggaaaatttacaactccatctacattggatcacaagatgctctc
atagcacattatccccgaatctacaatgatgataagaacacctatattcgttatgaactt
gactatatcttataa
DBGET
integrated database retrieval system
