Suncus etruscus (white-toothed pygmy shrew): 126009002
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Entry
126009002 CDS
T09902
Symbol
COL3A1
Name
(RefSeq) collagen alpha-1(III) chain
KO
K19720
collagen type III alpha
Organism
setr
Suncus etruscus (white-toothed pygmy shrew)
Pathway
setr04611
Platelet activation
setr04820
Cytoskeleton in muscle cells
setr04926
Relaxin signaling pathway
setr04933
AGE-RAGE signaling pathway in diabetic complications
setr04974
Protein digestion and absorption
setr05146
Amoebiasis
setr05415
Diabetic cardiomyopathy
Brite
KEGG Orthology (KO) [BR:
setr00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
126009002 (COL3A1)
09150 Organismal Systems
09151 Immune system
04611 Platelet activation
126009002 (COL3A1)
09152 Endocrine system
04926 Relaxin signaling pathway
126009002 (COL3A1)
09154 Digestive system
04974 Protein digestion and absorption
126009002 (COL3A1)
09160 Human Diseases
09174 Infectious disease: parasitic
05146 Amoebiasis
126009002 (COL3A1)
09166 Cardiovascular disease
05415 Diabetic cardiomyopathy
126009002 (COL3A1)
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
126009002 (COL3A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
setr00536
]
126009002 (COL3A1)
Glycosaminoglycan binding proteins [BR:
setr00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
126009002 (COL3A1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
126009002
NCBI-ProteinID:
XP_049629288
LinkDB
All DBs
Position
5:complement(130407111..130448308)
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AA seq
1462 aa
AA seq
DB search
MMSFVQRGTWLLLALLHPTVIFAQQTQEDYDGGCAHLGQVYADRDVWKPEPCEICVCDSG
SVLCDAIMCDEQELDCENPEIPFGECCAVCPQPPTVPSRVPGGSGPQGPKGDPGPPGIPG
RNGDPGIPGQPGSPGPPGAPGICESCPTVNQNYSPQFDSYDVKAGGGGGGGFPGPAGPPG
PPGPPGASGHPGSPGSPGYQGPPGETGQAGPAGPPGPPGAVGPAGPAGKDGESGRPGRPG
DRGIPGPPGMKGPAGMPGFPGMKGHRGFDGRNGEKGETGAPGLKGENGLPGENGSPGPMG
PRGLPGERGRPGLPGAAGTRGNDGARGSDGQPGPPGPPGTAGFPGSPGAKGENGPAGSPG
SSGSPGQRGEPGPQGLAGSPGPPGPPGNNGSPGSKGEMGPAGILGAPGLPGGRGPAGPPG
AVGAPGQRGAAGEPGKNGAKGEPGQRGERGEAGTPGAPGAKGEDGKDGSPGEPGSNGLPG
TPGDRGAPGFRGAAGANGLPGEKGPAGERGGPGPAGPRGIAGEPGRDGLPGPPGLRGMTG
SPGGPGSDGKPGPPGNQGESGRPGPPGPSGPRGQPGVMGFPGPKGNDGAPGKNGERGGPG
GPGPQGPAGKNGETGPQGPPGPTGPAGDKGESGAPGLAGPQGLPGTNGPPGENGKPGEAG
PKGEPGGPGAPGVKGEPGSPGERGNPGQPGSAGPKGATGPAGPGGPKGPAGPPGVPGNSG
SPGLQGMPGERGAPGGQGPKGEKGEPGGPGADGGPGKDGPRGPAGPIGPPGPAGQPGDKG
EAGGPGIPGATGPRGGPGERGEHGPPGPAGFPGAPGQNGEPGSKGERGAPGEKGEGGPPG
VAGPPGGSGPAGPPGPQGVKGERGSPGGPGASGFPGARGLPGPPGSNGNPGPPGTNGAPG
KDGPAGPPGNSGAPGNPGPSGPKGDAGPPGEKGSPGSQGPPGSPGPLGIAGITGARGLAG
PPGMPGARGSPGPQGIKGESGKPGPSGHNGERGPPGPQGLPGLAGTAGEPGRDGNPGSDG
LPGRDGSPGGKGDRGENGSPGAPGAPGHPGPPGPVGPSGKSGDRGETGPAGPAGAPGPAG
SRGAPGPQGPRGDKGEAGERGSNGIKGHRGFPGNPGPPGSPGIAGHQGAVGSPGPAGPRG
PTGPNGPPGKDGVSGHPGPIGPPGPRGNRGERGSEGSPGHPGQPGPPGPPGAPGPCCGGG
GAISGGGEKAGGFAPYYGDEPVDLKINTEEIMTSLKSVSGQLENHISPDGSRKHPARNCR
DLKFCHPELQSGEYWVDPNQGCKMDAIKVFCNMETGETCINANPSSVPRKNWWKDSGAAK
YVWFGETMDGGFQFSYGNPDLPEDVLDVQLAFLRLLSSRASQNITYHCKNSIAYMDHANG
NVKKALKLMGSNDGEFKAEGNSKFTYTVLEDGCTKHTGEWGKTVFEYRTRKAMRLPIIDF
APYDIGGPDQEFGVDVGPVCFL
NT seq
4389 nt
NT seq
+upstream
nt +downstream
nt
atgatgagctttgtgcaaaggggaacctggttacttcttgctctgcttcatcccactgtt
attttcgcacagcagacccaagaagactatgacggaggatgtgcccatcttggtcaggtc
tatgcagatagagatgtctggaaaccagaaccatgcgaaatatgtgtctgtgactcagga
tctgttctttgtgatgccataatgtgtgatgaacaggaattagactgcgaaaacccagag
attccatttggggaatgttgtgcagtttgcccacagcctccaacagttccttctcgagtt
cctggtggatctggacctcaaggcccgaagggagatccaggtccacctggcatccctggg
agaaatggtgatcctggtatcccaggacaaccaggatcccctggtcctcctggtgctcct
ggaatctgtgaatcatgccctactgtcaatcagaactattctccccagtttgattcatac
gatgtcaaggctggaggtggtggaggcgggggctttcctggcccagctggtcctcctggc
cctcctggtccccctggtgcatctggtcatcctggatcacctggctctccaggataccaa
ggtccccctggtgaaactggacaagctggtcctgctggtcctcctggacctcctggtgct
gtaggtccagctggtcctgctggaaaagatggggaatcaggaagaccaggaagacctgga
gacagaggaatccctggacccccaggcatgaaaggccctgctggcatgcctggattccct
gggatgaaaggacacagaggttttgatgggcgaaatggagaaaagggagaaactggtgct
cctggattaaagggtgaaaatggtcttcctggtgaaaatggatctcctggacccatgggt
ccaagaggccttcctggtgagagaggaagaccaggacttcctggagctgcaggaactcga
ggcaatgatggtgctcgagggagtgatggacaaccaggcccacctggtccccctggaact
gcaggatttcctggttctcctggtgctaagggtgaaaatggacctgcgggatctcctggc
tctagtggctcccctggacaaagaggagaacctggaccccagggacttgctggttctcca
ggtcctccaggtcctcctggcaataatggcagtcctggtagtaaaggtgaaatgggtcct
gctggaattcttggagctcctgggctcccaggaggccgaggacctgctggacctcctggt
gccgttggtgctcctggacagagaggtgctgcaggtgaacctgggaagaatggtgccaaa
ggagagccaggacaacgtggtgaacgtggtgaagctggtactccaggcgctccaggagct
aagggtgaagatggcaaagatgggtcaccgggagaacctggttctaatggactcccaggc
actccaggagatcggggtgcacctggattccgaggtgctgctggagcaaatggccttcca
ggagaaaaggggcctgctggagagcgtggtggcccaggtcctgcagggcccagaggaatt
gccggagaacctggtcgagatggtcttcctggacctccgggattgaggggtatgactgga
agtccaggaggaccaggcagtgatgggaaaccaggccctcccggaaatcaaggagaaagt
ggcagaccagggcctccaggtccatctggtccccgaggacaaccaggtgtcatgggtttc
cctggtccaaaaggaaatgatggcgctcctggcaaaaatggagaacgaggtggccctggt
ggtcctggaccacagggccctgctgggaaaaatggtgaaactggacctcagggccctcct
gggcctactggaccagctggtgataaaggggaatcgggagctcctggcctagctggacca
caaggattgcctggaactaatggccctccaggagaaaatggaaaacctggtgaagcaggt
cccaagggtgaacctggcggaccaggagctccaggagtcaaaggtgaacccggttctcct
ggtgaacgaggaaatcctggtcaaccaggctctgcgggacctaaaggtgcaactggccct
gccggtccaggaggaccaaagggccctgcagggcctccaggggtgcccggtaattctggc
tctcctggtctgcaaggaatgcctggagaaagaggagctcctggaggtcaaggaccaaag
ggtgaaaagggtgagccaggtggtccaggtgctgatggtggtcctgggaaagatggccca
aggggtcctgctggtccaattggccctccaggcccagctggacagccaggagataagggt
gaagctggtggccccggaatcccaggtgcaactggtcctcgtggtggccctggtgagaga
ggtgaacatgggcctccaggacctgctgggttccctggtgctccagggcagaatggtgag
cctggttccaaaggagaaagaggagctccgggtgagaaaggtgaaggaggccctcctgga
gttgctggacctcctggcggttcagggccagctggtccccctggtccccaaggtgtcaaa
ggagaacgtggaagtcctggtggtcctggtgcatctggcttccctggtgctcgtggtctt
cctggtcctcctggtagtaatggcaacccaggaccccctggtactaacggcgctccaggt
aaagatgggcccgcaggtccacctgggaacagtggggctcctggcaaccctggaccatct
ggaccaaaaggtgacgctggtccgccaggagagaaaggatcccctggtagccagggacct
ccgggatctccgggccctcttggaattgcaggaattactggagcacgaggtcttgcagga
ccgccaggcatgccaggtgccaggggaagccccgggccacagggtatcaagggggaaagc
gggaaacccggacccagtggccataatggagaacgtggtcctcctggccctcaaggtctc
cctggtttggctggtacagctggtgaacctggaagagatggaaaccctggatcagatggt
cttccaggccgagatggttctcctggtggcaagggtgaccgtggtgaaaatgggtctcct
ggtgccccaggtgctcctggtcatcctggcccccctggtcctgttggtccctctggaaag
agtggtgacagaggagaaactggtccagctggtccagctggagctccaggtcctgctggc
tcccgaggtgctcctgggccacaaggtccacgtggtgacaagggtgaagcgggtgaacgt
ggctctaatggcatcaaaggacatcgaggattccctggaaatccaggcccccctggctct
ccaggcattgccggtcaccaaggtgcagtgggtagtccaggacctgcaggccccagggga
cctactggacctaatggacctcctggcaaagacggagtgagtggacacccaggtcctatt
gggccaccaggacctcgaggtaacagaggagaaagaggatctgaaggctctccaggtcac
ccaggacaacctggccctcccggacctcctggtgcccctggtccatgctgtggtgggggt
ggtgcaatctctggtggaggcgaaaaagctggtgggtttgccccatattatggagatgaa
cctgtggacttaaaaatcaacacggaagagattatgacttcactcaaatccgtcagtgga
cagctagaaaaccacattagccctgacggttctcggaaacaccctgcccggaactgccgg
gatctgaagttctgccaccctgaactccaaagtggagaatattgggttgatcctaaccaa
ggttgcaagatggatgctattaaagtattctgtaatatggagacaggggaaacatgcatt
aatgccaatccttcaagtgtcccacgcaagaactggtggaaagattctggtgctgcaaaa
tatgtttggtttggagaaaccatggatggcggttttcagtttagctatggcaatcctgat
cttcctgaagatgtccttgatgtccagctggctttcctcagacttctttctagccgggcc
tcccaaaacattacatatcactgcaagaatagtattgcatacatggatcatgccaatggg
aatgtcaagaaggctctaaaattgatgggatccaatgatggtgaattcaaggctgaagga
aatagcaaattcacatacacagttctggaagatggttgcactaaacacactggcgaatgg
ggcaagacagtctttgaatatagaacacgcaaagctatgagactacctattatagatttt
gcaccctatgatattggtggtcccgatcaagaattcggtgtggacgttggccctgtttgc
tttttataa
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