Suncus etruscus (white-toothed pygmy shrew): 126009040
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Entry
126009040 CDS
T09902
Symbol
SCN1A
Name
(RefSeq) sodium channel protein type 1 subunit alpha isoform X1
KO
K04833
voltage-gated sodium channel type I alpha
Organism
setr
Suncus etruscus (white-toothed pygmy shrew)
Pathway
setr04728
Dopaminergic synapse
Brite
KEGG Orthology (KO) [BR:
setr00001
]
09150 Organismal Systems
09156 Nervous system
04728 Dopaminergic synapse
126009040 (SCN1A)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
setr04040
]
126009040 (SCN1A)
Ion channels [BR:
setr04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
126009040 (SCN1A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_cytopl
Na_trans_assoc
IQ_SCN5A_C
PKD_channel
GPHH
ATP-synt_B
IQ
FUT8_N_cat
PFF1_TM
FraC
Motif
Other DBs
NCBI-GeneID:
126009040
NCBI-ProteinID:
XP_049629327
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Position
5:100887122..101049194
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AA seq
2009 aa
AA seq
DB search
MEQTVLVPPGPDSFNFFTRESLAAIERRIAEEKAKNPKADKKDDDENGPKPNSDLEAGKN
LPFIYGDIPPGMVSEPLEDMDPYYVNKKTFIVLNKGKAIFRFSATSALYILTPFNPLRKI
AIKILVHSLFSMLIMCTILTNCVFMTMSNPPDWTKNVEYTFTGIYTFESLIKIIARGFCL
EDFTFLRDPWNWLDFTVITFAYVTEFVDLGNVSALRTFRVLRALKTISVIPGLKTIVGAL
IQSVKKLSDVMILTVFCLSVFALIGLQLFMGNLRNKCVQWPPTNASLEEHSIEKNVTIDY
NGTLVNETHFEFDWKSYVQDTRYHYYLEGFLDALLCGNSSDAGQCPEGYMCVKAGRNPNY
GYTSFDTFSWAFLSLFRLMTQDFWENLYQLTLRAAGKTYMIFFVLVIFLGSFYLINLILA
VVAMAYEEQNQATLEEAEQKEAEFQQMLEQLKKQQEAAQQAAAVTASEHSREPSAAGGLS
DSSSEASKLSSKSAKERRNRRKKRKQKEQSGGEEKDEDDFHKSESEDSIRRKGFRFSIEG
NRLTYEKRYSSPHQSLLSIRGSLFSPRRNSRTSLFSFRGRAKDVGSENDFADDEHSTFED
NESRRDSLFVPRRHGERRNSNLSQTSRSSRMLAVFPANGKMHSTVDCNGVVSLVGGPSVP
TSPVGQLLPEVIIDKPATDDNGTTTETEMRKRRSSSFHVSMDFLEDPSQRQRAMSIASIL
TNTVEELEESRQKCPPCWYKFSNIFLIWDCSPYWLKVKHIVNLVVMDPFVDLAITICIVL
NTLFMAMEHYPMTDHFNHVLTVGNLVFTGIFTAEMFLKIIAMDPYYYFQAGWNIFDGFIV
TLSLVELGLADVEGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAII
VFIFAVVGMQLFGKSYKDCVCKISSDCKLPRWHMNDFFHSFLIVFRVLCGEWIETMWDCM
EVAGQAMCLTVFMMVMVIGNLVVLNLFLALLLSSFSADNLAATDDDNEMNNLQIAVDRMH
KGIAYVKRKLYEFIQQSFVKKKKILDEIKPLDDLNNKKDSCMSNHTTEIGKDLDYLKDVN
GTTSGIGTGSSVEKYIIDESDYMSFINNPSLTVTVPIAVGESDFENLNTEDFSSESDLEE
SKEKLNESSSSSEGSTVDIGAPEEEQPVVEPEETLEPEACFTEGCVRRFKCCQVSVEEGR
GKQWWNLRRTCFRIVEHNWFETFIVFMILLSSGALAFEDIYIDQRKTIKTMLEYADKVFT
YIFILEMLLKWVAYGYQTYFTNAWCWLDFLIVDVSLVSLTANALGYSELGAIKSLRTLRA
LRPLRALSRFEGMRVVVNALLGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKFYHCVNTT
TGDMFKITEVNNHSECQSLIDRNETARWKNVKVNFDNVGFGYLSLLQVATFKGWMDIMYA
AVDSRNVELQPKYEESLYMYLYFVIFIIFGSFFTLNLFIGVIIDNFNQQKKKFGGQDIFM
TEEQKKYYNAMKKLGSKKPQKPIPRPGNKFQGMVFDFVTRQVFDISIMILICLNMVTMMV
ETDDQSDYVTNILTRINLVFIVLFTGECVLKLISLRHYYFTIGWNIFDFVVVILSIVGMF
LAELIEKYFVSPTLFRVIRLARIGRILRLIKGAKGIRTLLFALMMSLPALFNIGLLLFLV
MFIYAIFGMSNFAYVKREVGIDDMFNFETFGNSMICLFQITTSAGWDGLLAPILNSGPPD
CDPNKNNPGSSVKGDCGNPSVGIFFFVSYIIISFLVVVNMYIAVILENFSVATEESAEPL
SEDDFEMFYEVWEKFDPDATQFMEFEKLSQFAAALEPPLNLPQPNKLQLIAMDLPMVSGD
RIHCLDILFAFTKRVLGESGEMDALRIQMEERFMASNPSKVSYQPITTTLKRKQEEVSAV
IIQRAYRRHLLKRTVKQASFTYNKNKLKGGANLLIKEDIIIDRINENSITEKTDLTMSTA
ACPPSYDRVTKPIVEKHEQEGKDEKAKGK
NT seq
6030 nt
NT seq
+upstream
nt +downstream
nt
atggagcaaacagtgcttgtaccaccaggacctgacagcttcaacttcttcaccagagaa
tctcttgcagctattgaaagacgcattgcagaagaaaaggctaagaatcccaaagcagac
aaaaaagatgatgacgaaaatggcccaaagccaaatagtgacttggaagctggaaagaat
cttccttttatctatggagacatacctccaggtatggtgtcagagccgctggaggacatg
gacccctactatgtcaacaaaaaaacttttatagtattgaataaagggaaggccatcttc
cggttcagtgccacttcagccctgtacattttaactcccttcaatcctcttaggaaaata
gctattaagattttggtacattcattattcagcatgctaattatgtgcactattttaacg
aactgtgtgtttatgacaatgagtaaccctcctgattggacaaagaatgtagagtatacc
ttcacaggaatatatacatttgaatcactcataaaaattattgcaagaggcttttgttta
gaagattttacttttcttcgggatccatggaactggctagactttactgtcataacattt
gcatatgtgacagagtttgtggacctgggcaatgtctcagcattgagaacattcagagtt
cttcgagcattgaaaaccatttcagtcattccaggtctgaaaaccatcgtgggggccctg
attcaatctgtgaagaaactctcagatgttatgatcctgaccgtgttctgtctgagtgta
tttgcattaattggactacagctcttcatgggaaacttgcggaataaatgtgtccaatgg
cctcccaccaatgcatccctagaggagcacagtatagagaagaatgtaactattgattat
aatggcacacttgtaaatgaaactcattttgagtttgactggaaatcatatgttcaagat
acaaggtatcattattacttggagggttttttagatgcacttctatgtggaaatagttcg
gatgcaggtcaatgcccagaaggatatatgtgtgtgaaagctggtagaaatcctaattat
ggctacacaagctttgataccttcagttgggcatttttgtccctatttagactgatgact
caggacttctgggagaatctttaccaactgacattacgtgcagctggaaaaacatacatg
atattttttgtcctggtgattttcttgggatcattctacctgataaatttaatcctggct
gtggtagctatggcttatgaggaacagaaccaggctactttagaagaagcagaacaaaaa
gaagctgaatttcagcagatgcttgagcagcttaaaaagcaacaggaggcagcacagcaa
gcagcggctgttactgcctcagagcattctagagaacccagtgcagcaggcggactctcc
gacagctcctctgaagcctctaagttgagttctaagagtgccaaggagagaagaaaccgg
aggaagaaaagaaaacaaaaagaacaatctggtggggaagaaaaagatgaggatgacttc
cataaatctgaatctgaagacagcatccggaggaaaggatttcgtttctccatcgaaggg
aatagattaacatatgaaaagaggtactcctccccacaccagtctttgttgagcattcga
ggctccctgttttctccaaggcgaaatagcagaaccagccttttcagttttagaggacgt
gcaaaggatgtgggatcagagaacgactttgcggacgatgaacacagtacgtttgaggat
aacgagagtcggcgagattctttgttcgttccccggagacacggagagcgacgcaacagt
aacctaagtcagaccagtaggtcatcccggatgctggctgtgtttccagccaatgggaag
atgcacagcactgtggattgcaatggtgtggtttccttggttggtggaccttcagttcct
acatcgcctgttggacagcttctgccagaggtgataatagataagccagctactgatgac
aatggaaccaccactgaaactgaaatgagaaagagaagatcaagttcttttcatgtttcc
atggattttctagaagatccttcccaaagacaaagagcaatgagtatagccagcatttta
acaaacactgtagaagaacttgaagaatccaggcagaaatgtccaccttgttggtataaa
ttttccaacatattcttaatatgggactgttcgccatattggttaaaagtaaaacatatt
gtcaacctagttgtgatggacccatttgttgacctggccatcaccatttgtattgtctta
aatacacttttcatggccatggagcactatccaatgacagatcatttcaatcatgtgctt
acagtaggaaacttggttttcactgggatctttacagcagaaatgtttctgaaaattatt
gccatggacccttactattattttcaagcaggctggaatatctttgatggttttattgtg
acacttagcctggtagaacttggtctcgctgatgtggaaggattatcagttcttcgttca
ttccgactgcttcgagttttcaaattggcaaaatcatggccaaccttaaatatgctaata
aagatcattggcaattcagtgggggctctgggaaatttaaccttggtgttggccatcatt
gtcttcattttcgctgtggtgggcatgcagctctttggtaaaagctacaaagactgtgtc
tgtaagatctccagtgactgcaagctcccacgttggcacatgaatgacttcttccactcc
tttctgattgtgtttcgtgtactttgtggagaatggatagagaccatgtgggattgtatg
gaagtagccggtcaagctatgtgccttactgtgttcatgatggtgatggtgattggaaac
ctggtggtcctgaatctctttcttgccttgcttctgagctcatttagtgctgacaacctt
gcagccactgatgatgataatgaaatgaacaatctccaaattgctgtggataggatgcat
aaaggaatagcatacgtgaagagaaaactatatgaattcattcaacaatcctttgttaaa
aaaaaaaagatattagatgaaattaaaccactggatgatctaaacaataaaaaggacagt
tgcatgtccaatcacacaacagaaattgggaaagatcttgactaccttaaagatgtaaat
ggaaccacaagtggaataggaactggaagtagtgttgaaaaatacattattgatgaaagt
gactatatgtcatttataaacaatcccagtcttactgtgactgtaccaattgctgtagga
gagtctgactttgaaaatttaaacactgaggatttcagtagtgagtcagatctggaagaa
agcaaagagaaacttaacgaaagcagtagttcctctgaaggcagcacagtagacattggt
gcacctgaagaagagcagcctgtggtggaacctgaggaaactcttgaacctgaagcctgt
ttcactgaaggctgtgtacgaagattcaaatgttgtcaagtcagtgtggaagaaggaaga
ggaaaacagtggtggaacttaagaaggacttgtttccgcatagtagaacataattggttt
gagaccttcattgtgtttatgattctacttagtagtggtgctctggcatttgaagatata
tatattgatcagcgaaagacaattaaaacaatgttggaatatgctgacaaagtttttact
tacattttcattctggaaatgcttctaaaatgggtagcatatggctatcaaacatatttc
accaacgcttggtgttggctggacttcttaattgttgatgtttcattggtcagtttaaca
gcgaatgccttgggttactcagaacttggtgccatcaaatctctcaggacactaagagct
ctgagacctctaagagccttgtcgcgatttgaaggaatgagggtggttgtgaatgccctt
ttaggagcaattccatccatcatgaatgtgcttctggtttgtcttatattctggctaatt
ttcagcatcatgggcgtaaatttgtttgctggcaaattctaccattgtgttaacactaca
actggtgacatgtttaaaatcactgaagtcaataatcattctgaatgccaaagcctaata
gacagaaatgagactgctcgatggaaaaatgtgaaagtaaactttgataatgtaggattt
ggttatctctctttgcttcaagttgccacatttaagggatggatggatataatgtatgcc
gcagttgattcaagaaatgtggaactccaacctaaatatgaggaaagtctatacatgtat
ctttactttgttatttttatcatctttgggtccttcttcacattgaacctgtttattggt
gtcatcatagataatttcaatcagcaaaaaaagaagtttggaggtcaagacatctttatg
acagaagagcagaagaaatactataatgcaatgaaaaaattaggatcaaaaaagccacaa
aaacctatacctcgaccaggaaataaatttcaaggaatggtatttgactttgtgaccaga
caagtttttgacataagcatcatgattctcatctgtcttaacatggtcacaatgatggta
gaaacagatgaccaaagtgattatgtgactaacatattgactcgcatcaacctcgtgttc
attgtgctgttcactggagaatgtgtactgaagctcatctccctgcgccattattatttt
accataggctggaatatttttgattttgtggttgttatcctctctattgtaggtatgttt
ctggctgaacttatagaaaaatattttgtgtctcctaccttatttcgagtcatccgtctc
gccaggattggtcgaatcttgcgtctgatcaaaggggccaaggggatccgcactctgctc
tttgccctgatgatgtccctccctgccctgtttaacatcggcctcctgctcttcctggtc
atgttcatctatgccatctttggaatgtccaactttgcctatgttaagagagaagttgga
attgatgacatgtttaactttgaaacctttggcaatagtatgatctgcttgtttcagatt
accacctctgctggctgggatggattgctagcacctattcttaatagtggccctccagac
tgtgacccgaataaaaataacccgggaagctcagttaagggagactgtggaaacccatct
gttgggattttcttctttgtcagttacatcataatctcgttcctggttgtggtgaacatg
tacatagccgtcatcctggagaacttcagtgttgcaactgaagaaagtgcagagcccctg
agtgaggatgactttgagatgttctacgaggtttgggagaagtttgatccagatgccacc
cagttcatggagtttgaaaaactatctcagtttgcagctgctcttgagcccccactcaat
ttgccgcaacccaacaaactccagctcatcgccatggatttgcccatggtaagtggtgac
aggattcactgtcttgatattttatttgcttttacgaagcgtgttctaggggagagtgga
gagatggatgctcttcgaattcaaatggaagagcgtttcatggcttccaacccctcaaag
gtctcctatcaaccaattacgacaactttaaaacgaaaacaagaggaggtgtccgctgtt
attatccagcgtgcttacagacgccaccttttaaagcgaactgtaaaacaagcttcattt
acatataataaaaataaactcaaaggtggggctaatcttcttatcaaagaagacataata
attgacagaataaatgaaaactcaattacagaaaaaactgatctgaccatgtccacagca
gcttgtccaccctcctatgatcgggtaacaaagccaatcgtggaaaaacatgagcaagaa
ggcaaagatgaaaaagccaaagggaaataa
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integrated database retrieval system