KEGG   Suncus etruscus (white-toothed pygmy shrew): 126009040
Entry
126009040         CDS       T09902                                 
Symbol
SCN1A
Name
(RefSeq) sodium channel protein type 1 subunit alpha isoform X1
  KO
K04833  voltage-gated sodium channel type I alpha
Organism
setr  Suncus etruscus (white-toothed pygmy shrew)
Pathway
setr04728  Dopaminergic synapse
Brite
KEGG Orthology (KO) [BR:setr00001]
 09150 Organismal Systems
  09156 Nervous system
   04728 Dopaminergic synapse
    126009040 (SCN1A)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04040 Ion channels [BR:setr04040]
    126009040 (SCN1A)
Ion channels [BR:setr04040]
 Voltage-gated cation channels
  Sodium channel, voltage-gated (Nav)
   126009040 (SCN1A)
SSDB
Motif
Pfam: Ion_trans Na_trans_cytopl Na_trans_assoc IQ_SCN5A_C PKD_channel GPHH ATP-synt_B IQ FUT8_N_cat PFF1_TM FraC
Other DBs
NCBI-GeneID: 126009040
NCBI-ProteinID: XP_049629327
LinkDB
Position
5:100887122..101049194
AA seq 2009 aa
MEQTVLVPPGPDSFNFFTRESLAAIERRIAEEKAKNPKADKKDDDENGPKPNSDLEAGKN
LPFIYGDIPPGMVSEPLEDMDPYYVNKKTFIVLNKGKAIFRFSATSALYILTPFNPLRKI
AIKILVHSLFSMLIMCTILTNCVFMTMSNPPDWTKNVEYTFTGIYTFESLIKIIARGFCL
EDFTFLRDPWNWLDFTVITFAYVTEFVDLGNVSALRTFRVLRALKTISVIPGLKTIVGAL
IQSVKKLSDVMILTVFCLSVFALIGLQLFMGNLRNKCVQWPPTNASLEEHSIEKNVTIDY
NGTLVNETHFEFDWKSYVQDTRYHYYLEGFLDALLCGNSSDAGQCPEGYMCVKAGRNPNY
GYTSFDTFSWAFLSLFRLMTQDFWENLYQLTLRAAGKTYMIFFVLVIFLGSFYLINLILA
VVAMAYEEQNQATLEEAEQKEAEFQQMLEQLKKQQEAAQQAAAVTASEHSREPSAAGGLS
DSSSEASKLSSKSAKERRNRRKKRKQKEQSGGEEKDEDDFHKSESEDSIRRKGFRFSIEG
NRLTYEKRYSSPHQSLLSIRGSLFSPRRNSRTSLFSFRGRAKDVGSENDFADDEHSTFED
NESRRDSLFVPRRHGERRNSNLSQTSRSSRMLAVFPANGKMHSTVDCNGVVSLVGGPSVP
TSPVGQLLPEVIIDKPATDDNGTTTETEMRKRRSSSFHVSMDFLEDPSQRQRAMSIASIL
TNTVEELEESRQKCPPCWYKFSNIFLIWDCSPYWLKVKHIVNLVVMDPFVDLAITICIVL
NTLFMAMEHYPMTDHFNHVLTVGNLVFTGIFTAEMFLKIIAMDPYYYFQAGWNIFDGFIV
TLSLVELGLADVEGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAII
VFIFAVVGMQLFGKSYKDCVCKISSDCKLPRWHMNDFFHSFLIVFRVLCGEWIETMWDCM
EVAGQAMCLTVFMMVMVIGNLVVLNLFLALLLSSFSADNLAATDDDNEMNNLQIAVDRMH
KGIAYVKRKLYEFIQQSFVKKKKILDEIKPLDDLNNKKDSCMSNHTTEIGKDLDYLKDVN
GTTSGIGTGSSVEKYIIDESDYMSFINNPSLTVTVPIAVGESDFENLNTEDFSSESDLEE
SKEKLNESSSSSEGSTVDIGAPEEEQPVVEPEETLEPEACFTEGCVRRFKCCQVSVEEGR
GKQWWNLRRTCFRIVEHNWFETFIVFMILLSSGALAFEDIYIDQRKTIKTMLEYADKVFT
YIFILEMLLKWVAYGYQTYFTNAWCWLDFLIVDVSLVSLTANALGYSELGAIKSLRTLRA
LRPLRALSRFEGMRVVVNALLGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKFYHCVNTT
TGDMFKITEVNNHSECQSLIDRNETARWKNVKVNFDNVGFGYLSLLQVATFKGWMDIMYA
AVDSRNVELQPKYEESLYMYLYFVIFIIFGSFFTLNLFIGVIIDNFNQQKKKFGGQDIFM
TEEQKKYYNAMKKLGSKKPQKPIPRPGNKFQGMVFDFVTRQVFDISIMILICLNMVTMMV
ETDDQSDYVTNILTRINLVFIVLFTGECVLKLISLRHYYFTIGWNIFDFVVVILSIVGMF
LAELIEKYFVSPTLFRVIRLARIGRILRLIKGAKGIRTLLFALMMSLPALFNIGLLLFLV
MFIYAIFGMSNFAYVKREVGIDDMFNFETFGNSMICLFQITTSAGWDGLLAPILNSGPPD
CDPNKNNPGSSVKGDCGNPSVGIFFFVSYIIISFLVVVNMYIAVILENFSVATEESAEPL
SEDDFEMFYEVWEKFDPDATQFMEFEKLSQFAAALEPPLNLPQPNKLQLIAMDLPMVSGD
RIHCLDILFAFTKRVLGESGEMDALRIQMEERFMASNPSKVSYQPITTTLKRKQEEVSAV
IIQRAYRRHLLKRTVKQASFTYNKNKLKGGANLLIKEDIIIDRINENSITEKTDLTMSTA
ACPPSYDRVTKPIVEKHEQEGKDEKAKGK
NT seq 6030 nt   +upstreamnt  +downstreamnt
atggagcaaacagtgcttgtaccaccaggacctgacagcttcaacttcttcaccagagaa
tctcttgcagctattgaaagacgcattgcagaagaaaaggctaagaatcccaaagcagac
aaaaaagatgatgacgaaaatggcccaaagccaaatagtgacttggaagctggaaagaat
cttccttttatctatggagacatacctccaggtatggtgtcagagccgctggaggacatg
gacccctactatgtcaacaaaaaaacttttatagtattgaataaagggaaggccatcttc
cggttcagtgccacttcagccctgtacattttaactcccttcaatcctcttaggaaaata
gctattaagattttggtacattcattattcagcatgctaattatgtgcactattttaacg
aactgtgtgtttatgacaatgagtaaccctcctgattggacaaagaatgtagagtatacc
ttcacaggaatatatacatttgaatcactcataaaaattattgcaagaggcttttgttta
gaagattttacttttcttcgggatccatggaactggctagactttactgtcataacattt
gcatatgtgacagagtttgtggacctgggcaatgtctcagcattgagaacattcagagtt
cttcgagcattgaaaaccatttcagtcattccaggtctgaaaaccatcgtgggggccctg
attcaatctgtgaagaaactctcagatgttatgatcctgaccgtgttctgtctgagtgta
tttgcattaattggactacagctcttcatgggaaacttgcggaataaatgtgtccaatgg
cctcccaccaatgcatccctagaggagcacagtatagagaagaatgtaactattgattat
aatggcacacttgtaaatgaaactcattttgagtttgactggaaatcatatgttcaagat
acaaggtatcattattacttggagggttttttagatgcacttctatgtggaaatagttcg
gatgcaggtcaatgcccagaaggatatatgtgtgtgaaagctggtagaaatcctaattat
ggctacacaagctttgataccttcagttgggcatttttgtccctatttagactgatgact
caggacttctgggagaatctttaccaactgacattacgtgcagctggaaaaacatacatg
atattttttgtcctggtgattttcttgggatcattctacctgataaatttaatcctggct
gtggtagctatggcttatgaggaacagaaccaggctactttagaagaagcagaacaaaaa
gaagctgaatttcagcagatgcttgagcagcttaaaaagcaacaggaggcagcacagcaa
gcagcggctgttactgcctcagagcattctagagaacccagtgcagcaggcggactctcc
gacagctcctctgaagcctctaagttgagttctaagagtgccaaggagagaagaaaccgg
aggaagaaaagaaaacaaaaagaacaatctggtggggaagaaaaagatgaggatgacttc
cataaatctgaatctgaagacagcatccggaggaaaggatttcgtttctccatcgaaggg
aatagattaacatatgaaaagaggtactcctccccacaccagtctttgttgagcattcga
ggctccctgttttctccaaggcgaaatagcagaaccagccttttcagttttagaggacgt
gcaaaggatgtgggatcagagaacgactttgcggacgatgaacacagtacgtttgaggat
aacgagagtcggcgagattctttgttcgttccccggagacacggagagcgacgcaacagt
aacctaagtcagaccagtaggtcatcccggatgctggctgtgtttccagccaatgggaag
atgcacagcactgtggattgcaatggtgtggtttccttggttggtggaccttcagttcct
acatcgcctgttggacagcttctgccagaggtgataatagataagccagctactgatgac
aatggaaccaccactgaaactgaaatgagaaagagaagatcaagttcttttcatgtttcc
atggattttctagaagatccttcccaaagacaaagagcaatgagtatagccagcatttta
acaaacactgtagaagaacttgaagaatccaggcagaaatgtccaccttgttggtataaa
ttttccaacatattcttaatatgggactgttcgccatattggttaaaagtaaaacatatt
gtcaacctagttgtgatggacccatttgttgacctggccatcaccatttgtattgtctta
aatacacttttcatggccatggagcactatccaatgacagatcatttcaatcatgtgctt
acagtaggaaacttggttttcactgggatctttacagcagaaatgtttctgaaaattatt
gccatggacccttactattattttcaagcaggctggaatatctttgatggttttattgtg
acacttagcctggtagaacttggtctcgctgatgtggaaggattatcagttcttcgttca
ttccgactgcttcgagttttcaaattggcaaaatcatggccaaccttaaatatgctaata
aagatcattggcaattcagtgggggctctgggaaatttaaccttggtgttggccatcatt
gtcttcattttcgctgtggtgggcatgcagctctttggtaaaagctacaaagactgtgtc
tgtaagatctccagtgactgcaagctcccacgttggcacatgaatgacttcttccactcc
tttctgattgtgtttcgtgtactttgtggagaatggatagagaccatgtgggattgtatg
gaagtagccggtcaagctatgtgccttactgtgttcatgatggtgatggtgattggaaac
ctggtggtcctgaatctctttcttgccttgcttctgagctcatttagtgctgacaacctt
gcagccactgatgatgataatgaaatgaacaatctccaaattgctgtggataggatgcat
aaaggaatagcatacgtgaagagaaaactatatgaattcattcaacaatcctttgttaaa
aaaaaaaagatattagatgaaattaaaccactggatgatctaaacaataaaaaggacagt
tgcatgtccaatcacacaacagaaattgggaaagatcttgactaccttaaagatgtaaat
ggaaccacaagtggaataggaactggaagtagtgttgaaaaatacattattgatgaaagt
gactatatgtcatttataaacaatcccagtcttactgtgactgtaccaattgctgtagga
gagtctgactttgaaaatttaaacactgaggatttcagtagtgagtcagatctggaagaa
agcaaagagaaacttaacgaaagcagtagttcctctgaaggcagcacagtagacattggt
gcacctgaagaagagcagcctgtggtggaacctgaggaaactcttgaacctgaagcctgt
ttcactgaaggctgtgtacgaagattcaaatgttgtcaagtcagtgtggaagaaggaaga
ggaaaacagtggtggaacttaagaaggacttgtttccgcatagtagaacataattggttt
gagaccttcattgtgtttatgattctacttagtagtggtgctctggcatttgaagatata
tatattgatcagcgaaagacaattaaaacaatgttggaatatgctgacaaagtttttact
tacattttcattctggaaatgcttctaaaatgggtagcatatggctatcaaacatatttc
accaacgcttggtgttggctggacttcttaattgttgatgtttcattggtcagtttaaca
gcgaatgccttgggttactcagaacttggtgccatcaaatctctcaggacactaagagct
ctgagacctctaagagccttgtcgcgatttgaaggaatgagggtggttgtgaatgccctt
ttaggagcaattccatccatcatgaatgtgcttctggtttgtcttatattctggctaatt
ttcagcatcatgggcgtaaatttgtttgctggcaaattctaccattgtgttaacactaca
actggtgacatgtttaaaatcactgaagtcaataatcattctgaatgccaaagcctaata
gacagaaatgagactgctcgatggaaaaatgtgaaagtaaactttgataatgtaggattt
ggttatctctctttgcttcaagttgccacatttaagggatggatggatataatgtatgcc
gcagttgattcaagaaatgtggaactccaacctaaatatgaggaaagtctatacatgtat
ctttactttgttatttttatcatctttgggtccttcttcacattgaacctgtttattggt
gtcatcatagataatttcaatcagcaaaaaaagaagtttggaggtcaagacatctttatg
acagaagagcagaagaaatactataatgcaatgaaaaaattaggatcaaaaaagccacaa
aaacctatacctcgaccaggaaataaatttcaaggaatggtatttgactttgtgaccaga
caagtttttgacataagcatcatgattctcatctgtcttaacatggtcacaatgatggta
gaaacagatgaccaaagtgattatgtgactaacatattgactcgcatcaacctcgtgttc
attgtgctgttcactggagaatgtgtactgaagctcatctccctgcgccattattatttt
accataggctggaatatttttgattttgtggttgttatcctctctattgtaggtatgttt
ctggctgaacttatagaaaaatattttgtgtctcctaccttatttcgagtcatccgtctc
gccaggattggtcgaatcttgcgtctgatcaaaggggccaaggggatccgcactctgctc
tttgccctgatgatgtccctccctgccctgtttaacatcggcctcctgctcttcctggtc
atgttcatctatgccatctttggaatgtccaactttgcctatgttaagagagaagttgga
attgatgacatgtttaactttgaaacctttggcaatagtatgatctgcttgtttcagatt
accacctctgctggctgggatggattgctagcacctattcttaatagtggccctccagac
tgtgacccgaataaaaataacccgggaagctcagttaagggagactgtggaaacccatct
gttgggattttcttctttgtcagttacatcataatctcgttcctggttgtggtgaacatg
tacatagccgtcatcctggagaacttcagtgttgcaactgaagaaagtgcagagcccctg
agtgaggatgactttgagatgttctacgaggtttgggagaagtttgatccagatgccacc
cagttcatggagtttgaaaaactatctcagtttgcagctgctcttgagcccccactcaat
ttgccgcaacccaacaaactccagctcatcgccatggatttgcccatggtaagtggtgac
aggattcactgtcttgatattttatttgcttttacgaagcgtgttctaggggagagtgga
gagatggatgctcttcgaattcaaatggaagagcgtttcatggcttccaacccctcaaag
gtctcctatcaaccaattacgacaactttaaaacgaaaacaagaggaggtgtccgctgtt
attatccagcgtgcttacagacgccaccttttaaagcgaactgtaaaacaagcttcattt
acatataataaaaataaactcaaaggtggggctaatcttcttatcaaagaagacataata
attgacagaataaatgaaaactcaattacagaaaaaactgatctgaccatgtccacagca
gcttgtccaccctcctatgatcgggtaacaaagccaatcgtggaaaaacatgagcaagaa
ggcaaagatgaaaaagccaaagggaaataa

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