Suncus etruscus (white-toothed pygmy shrew): 126009259
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Entry
126009259 CDS
T09902
Symbol
RORA
Name
(RefSeq) nuclear receptor ROR-alpha
KO
K08532
RAR-related orphan receptor alpha
Organism
setr
Suncus etruscus (white-toothed pygmy shrew)
Pathway
setr04659
Th17 cell differentiation
setr04710
Circadian rhythm
setr05017
Spinocerebellar ataxia
setr05321
Inflammatory bowel disease
Brite
KEGG Orthology (KO) [BR:
setr00001
]
09150 Organismal Systems
09151 Immune system
04659 Th17 cell differentiation
126009259 (RORA)
09159 Environmental adaptation
04710 Circadian rhythm
126009259 (RORA)
09160 Human Diseases
09163 Immune disease
05321 Inflammatory bowel disease
126009259 (RORA)
09164 Neurodegenerative disease
05017 Spinocerebellar ataxia
126009259 (RORA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
setr03000
]
126009259 (RORA)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
setr03310
]
126009259 (RORA)
Transcription factors [BR:
setr03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
126009259 (RORA)
Nuclear receptors [BR:
setr03310
]
1. Thyroid hormone like
1F. RAR-related orphan receptor
126009259 (RORA)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
HisG
Motif
Other DBs
NCBI-GeneID:
126009259
NCBI-ProteinID:
XP_049629624
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Position
5:complement(29480647..29575603)
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AA seq
468 aa
AA seq
DB search
MMYFVIAAMKAQIEIIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKNC
LIDRTSRNRCQHCRLQKCLAVGMSRDAVKFGRMSKKQRDSLYAEVQKHRLQQQQRDHPQQ
PGEAEPLTPTYSISANGLTELHDELSTYIDGHTPEGSKADSAVSSFYLDIQPSPDQSGLD
INGIKPEPICDYTPASGFFPYCSFTNGETSPTVSMAELEHLAQNISKSHLETCQYLREEL
QQITWQTFLQEEIENYQNKQREVMWQLCSIKITEAIQYVVEFAKRIDGFMELCQNDQIVL
LKAGSLEVVFIRMCRAFDSQNNTVYFDGKYASPEVFKSLGCEDFISFVFEFGKSLCSMHL
TEDEIALFSAFVLMSADRSWLQEKVKIEKLQQKIQLALQHVLQKNHREDGILTKLICKVS
TLRALCGRHTEKLMAFKAIYPDIVRLHFPPLYKELFTSEFEPAMQIDG
NT seq
1407 nt
NT seq
+upstream
nt +downstream
nt
atgatgtattttgtgatcgcagcgatgaaagctcaaattgaaattattccatgcaagatc
tgtggagacaaatcatcaggaatccattatggtgtcattacatgtgaaggctgcaagggc
tttttcaggagaagtcagcaaagtaatgccacctactcctgtcctcgtcagaagaactgt
ttgattgatcgaaccagcaggaaccgttgccagcactgtcggttacagaaatgccttgcc
gtggggatgtctcgggatgctgtgaagtttggccggatgtccaagaaacagagagacagc
ttgtacgctgaggtgcagaagcaccggctgcagcaacagcagcgagaccacccacagcag
cccggggaggcagagccactgacacccacctacagcatctcagccaatgggctgacggag
ctgcatgacgagctgagcacctacatcgatgggcacaccccagagggtagcaaggccgac
tctgccgtcagcagcttctacctggacatacagccctccccagatcagtctggtctggac
atcaacgggatcaaaccggaacccatctgcgactacacgcccgcatcaggcttcttccct
tactgctccttcaccaacggagagacctccccaacggtgtccatggcagaactagaacac
cttgcacagaatatatctaagtcacatctggaaacttgccagtacttgagagaagagctc
cagcagatcacgtggcaaacttttcttcaagaggagattgaaaactatcaaaacaagcag
cgggaggtgatgtggcagctgtgttccatcaagatcacagaagcgatacagtatgtggtg
gagttcgccaaacgcattgacgggtttatggagctgtgtcaaaacgatcaaattgtgctt
ctcaaagcaggttctctggaggtggtgtttatcagaatgtgccgtgcctttgactctcaa
aataacaccgtgtactttgatggaaaatatgctagtcctgaagtcttcaaatccttaggt
tgtgaagacttcattagctttgtatttgaatttgggaagagtttatgttctatgcacctg
actgaagatgaaattgctttattttctgcatttgtcctgatgtcagcagatcgttcatgg
ctgcaagaaaaggttaaaatagaaaaactgcaacagaaaattcaactagctcttcaacac
gtcctacagaagaatcaccgagaagatggaatactaacaaagttaatatgcaaggtgtct
acattacgagccttatgtggacgacatacagaaaagctcatggcatttaaagcaatatac
ccagacattgtgcgactccattttcctccattatacaaggaattgttcacttcagaattt
gagccagcaatgcaaatcgatgggtaa
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