Suncus etruscus (white-toothed pygmy shrew): 126009441
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Entry
126009441 CDS
T09902
Symbol
PABPC1
Name
(RefSeq) polyadenylate-binding protein 1
KO
K13126
polyadenylate-binding protein
Organism
setr
Suncus etruscus (white-toothed pygmy shrew)
Pathway
setr03015
mRNA surveillance pathway
setr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
setr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
126009441 (PABPC1)
09123 Folding, sorting and degradation
03018 RNA degradation
126009441 (PABPC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
setr03019
]
126009441 (PABPC1)
03041 Spliceosome [BR:
setr03041
]
126009441 (PABPC1)
Messenger RNA biogenesis [BR:
setr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
126009441 (PABPC1)
mRNA cycle factors
Stress granule specific factors
126009441 (PABPC1)
Spliceosome [BR:
setr03041
]
Complex C
Other components
Complex C specific factors
126009441 (PABPC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RBD_DEAH11
RRM_7
RRM_5
RRM_10
RBD_RDR6
RRM_occluded
RRM_3
YflT
Motif
Other DBs
NCBI-GeneID:
126009441
NCBI-ProteinID:
XP_049629838
LinkDB
All DBs
Position
5:151149368..151164532
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AA seq
636 aa
AA seq
DB search
MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDENGKSKGFGFVSFER
HEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKN
LDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT
KPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRA
AYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFSTMRPASSQVPRVMSTQ
RVANTSTQTMGPRPAAAAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQ
GQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESP
ESLRSKVDEAVAVLQAHQAKEAAQKAVNSATGVPTV
NT seq
1911 nt
NT seq
+upstream
nt +downstream
nt
atgaaccccagcgcgcccagctacccgatggcctcgctctacgtgggcgacctgcacccc
gacgtgacggaggccatgctgtacgagaagttcagcccggccgggcccatcctgtccatc
cgcgtgtgccgggacatgatcacccgccgctcgctcggctacgcctacgtcaacttccag
cagccggccgacgcggagcgtgctttggacaccatgaattttgatgttattaagggcaag
cctgtccgcatcatgtggtcgcagcgggatccatcccttcgcaaaagtggagtgggcaac
atattcattaaaaatttggataaatccattgataacaaagcactgtatgacacgttttct
gctttcggcaacatcctttcatgtaaggtggtttgtgatgagaatggctccaagggttac
ggatttgtacatttcgagacacaggaagcagcagaacgagctattgagaaaatgaatggg
atgctgctgaatgatcgcaaagtatttgttggacgatttaagtctcggaaggaacgagaa
gcagaacttggagcaagggcaaaagaattcaccaatgtttacatcaagaattttggagaa
gacatggatgatgagcgccttaaggaactctttggcaagtttggacctgccttaagtgtg
aaagtaatgacggatgaaaatggaaaatccaaaggttttggatttgtaagcttcgaaagg
catgaagatgctcagaaggctgtggatgagatgaatggaaaggagctcaatggcaaacag
atttatgttggtcgggctcagaaaaaagtggagcgccagacagaacttaagcgcaaattt
gaacagatgaagcaagatcggatcaccagataccagggtgttaacctttatgtgaaaaat
cttgatgatggcattgatgatgaacgtcttcggaaagagttttctccatttggtacaatc
actagtgcaaaggtgatgatggagggtggtcgcagcaaagggtttggttttgtatgtttc
tcatccccagaagaagccactaaagcagtcacagaaatgaatggtaggattgtggccacc
aagccattgtatgtagctttagctcagcgcaaagaagagcgccaggcccaccttactaac
cagtatatgcagagaatggcaagtgtgcgagcagtgcccaaccccgtcatcaacccgtac
cagccagctcctccttcaggttacttcatggcagctatcccacagacccagaaccgagct
gcgtactatcctcctagccaaattgctcaactaagaccaagtccacgctggactgctcag
ggtgccagacctcatccattccagaacatgcccggtgctatccgcccagccgctcctaga
ccaccatttagtacgatgagaccagcttcttcccaggttccgcgagtcatgtccacgcaa
cgtgttgctaacacatcaacacagaccatgggcccacgtcctgctgccgcagccgccgct
gctactcctgctgttcgcactgtccctcagtataagtatgccgcaggtgtgcgcaaccct
cagcagcatctcaacgcgcagccgcaggtcaccatgcagcagcctgctgtccatgtacaa
ggtcaggagcctttgactgcttccatgttggcatctgcccctcctcaagagcaaaagcaa
atgttgggtgaaaggctctttcctctcattcaggccatgcaccctactcttgctggtaaa
atcactggcatgttattggagattgacaattcagaacttcttcatatgcttgagtctccg
gaatctctccgttctaaagttgatgaagctgtagctgtactacaagcccaccaagcgaaa
gaggctgcccagaaagcagtgaacagtgccactggtgttccaactgtctaa
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