Suncus etruscus (white-toothed pygmy shrew): 126009518
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Entry
126009518 CDS
T09902
Symbol
NUP188
Name
(RefSeq) nucleoporin NUP188
KO
K14311
nuclear pore complex protein Nup188
Organism
setr
Suncus etruscus (white-toothed pygmy shrew)
Pathway
setr03013
Nucleocytoplasmic transport
setr05014
Amyotrophic lateral sclerosis
Brite
KEGG Orthology (KO) [BR:
setr00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
126009518 (NUP188)
09160 Human Diseases
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
126009518 (NUP188)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
setr03019
]
126009518 (NUP188)
Messenger RNA biogenesis [BR:
setr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
126009518 (NUP188)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup188_N-subdom_III
Nup188_N
Nup188_SH3-like
Motif
Other DBs
NCBI-GeneID:
126009518
NCBI-ProteinID:
XP_049629943
LinkDB
All DBs
Position
5:16842834..16902689
Genome browser
AA seq
1747 aa
AA seq
DB search
MAAAGGSPCVRSSRELWTILLGRSALRELSQIEAELNKHWQRLLEGLSYYKPPSPTSAEK
VKASKDVASPLKELGLRISKFLGLDEEQSVQLLQCYLQEDYRGTRDSLKTVLLDERQSQA
LILKIADYYYEERTCILRCVLHLLTYFQDERHPYRVEYAECVDKLEKDLVTNYRQQFEEL
YKTEAPTWETHGNLMTERQVSRWFVQCLREQSMLLEIIFLYYAYFEMAPSDLLVLTKMFK
GQGFGSRQTNRHLVDESMDPFVDRIGYFSALILLEGMDIESLHKYALEDQRELHQFAQDG
LICQEMDSLMLTFGDISHHAPVLLAWALLRHTLNPEESSSVVRKMGGTAIQLNVFQYLTR
LLRSLASGGNDCTNSTACMCIYGLLSFVLTSLELHTLGNQQDLLDAACEVLTDPSLPELF
WGTEPTSGLGIILDSVCGMFPHLLSPLLQLLRALVSGKSTAKKVYSFLDKMSFYNELYKH
KPHDVISHEDGTLWRRQTSKLLYPLGGQTNLRIPQGTLGQVMLDDRAYLVRWEYSYSSWT
LFTCEIEMLLHVVSTADVIQHCQRVKPIIDLVHKVISTDLSIADGLLPITSRIYMLLQRL
TTVISPPVDVIASCVNCLTVLAARNPAKVWTDLRHTGFLPFVVHPVSSMSQMLSAEGMNA
GGYGNLLMNSEQPQGEYGVTVAFLRLITTLVKGQLGNTQSQGLVPCVMFVLKEMLPSYHK
WRYNSHGVREQIGCLVLELIHAILNLCPEMDLHNSHIPSLQSLCICSLAYTEAGQTVINI
MGIGVDTIDMVMGVQHRSDGVDGHGQGQLLIKTVKLAFSVTNNVIRLKPPSNVVSPLEQA
LTQHGAHGNNLIAVLAKYIYHKHDPALPRLAIQLLKRLATVAPMSVYACLGNDAAAIRDA
FLTRLKSKIEDMRIKVMILEFLTVAVETQPGLIELFLNLEVKDSADGSKEFSLGTWSCLH
VVLELIDTQQQDRYWCPPLLHRAAISFLHALWQDRRDSAMLVLRTKPKFWENLTSPLFGT
LSPPSETSEPSVLETCALIMKIICLELYYVVKGSLDQSLKDTLLRFSREERFTYWSGYVR
SLAVHTAQTEGSSCAFSFEYQMLVSAWRMLLIIATSHAEILHLTDSEVRRQLFLDVLDGT
KVLLLVPGSVNCLHLGSMLCTLLLVLLRQWKGELGSVDEILGPLTEILEAVLQADQQLME
KTKARVFSAFITVLQMKELRVSDIPQYSELVLSVCGALQEQLIALFDQTRQSLATGSSTE
DKDSMETDDSSRTRSKDQRDGVCVLGLHLAKELCDVDEDGDSWLQVTRRLPILPTLFTAL
EVSLRLKQNLHFTEASLHLLLTLARTQQGATAVAGAGIIQSICLPLLSVYQLSSNGTGQA
TVTSRKSLVDVPSWPGVYRLSMSLMERLLKTLRYNFLTEALDFLGVHQERTLQCLNAVRT
VQSVACLEEADHTVGFILQLSNFTKEWRFHLPQLMRDVQVNLCYLCQACTSLLHSRKMLQ
HYLQNKNGNGRPSAAGPRLQRQLATLSTSSKQPSADTEASKQRALHAVQYALLKILCRTL
AALRHFTPDVCQILLDQSLDLAEYNFLFALSFTTPTFDSEVAPSFGTLLATVNVALNMLG
ELDKKKEPLTQAVGLSTQADGSRTLKALLMFSMENCFYLLISQAMRYLRDPAVPSRDKQR
MRQELSSELSTLLSSLSRYFRRGTPSSPATGVLPSPQGKCSSSSKASTESQEPLIQLVQA
FVRHVQR
NT seq
5244 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggccggcggcagcccgtgtgttaggagcagcagagaactgtggaccattctg
cttgggagatcggcccttcgggaactgagtcagatcgaggcagagctgaataagcactgg
cagcggctgttggaggggctttcttactataaacctccaagtccaacttcagcggagaaa
gtaaaagctagtaaagacgtagcttcacctctgaaggaactgggtttaagaatcagcaag
tttttgggtctggacgaagaacagagtgtgcagctgctccagtgttacctgcaggaggat
taccggggtactcgggactccctaaagacggtgctgctggacgaaaggcagagccaggcc
ttgattctgaagattgcagactattactatgaagaaagaacatgtattcttcgctgtgtg
ttacacctcctcacatattttcaagatgaaagacacccttatagggttgaatatgccgaa
tgtgttgataagttggagaaggacttagttacaaactaccgacagcagtttgaagagctc
tataaaacagaagcacccacatgggagacacatggaaacctcatgactgaacgccaggtg
tctcgctggtttgttcaatgcctccgtgaacagtcgatgctgctcgagatcatttttctt
tactatgcatactttgagatggcacccagtgatctgctggtactgaccaagatgttcaag
gggcagggctttggcagccggcagaccaacaggcacctggtggatgagtctatggatcct
ttcgtcgatcggatcgggtacttcagtgcccttatccttttggaaggcatggatattgaa
tccctgcataagtatgctctggaggaccagagagagctgcaccagttcgcccaggatggg
ctcatctgccaggaaatggactcgttgatgttgacctttggggacatttcccatcatgcc
ccagtgctcttggcctgggctctgctccgccacaccctaaacccagaagagtccagcagt
gttgtccggaagatggggggcacagccatccagctgaacgtctttcagtatttgacccgt
ctgcttcgctcgctggccagtgggggaaatgattgtaccaacagcacagcgtgcatgtgc
atatacggactcctgtctttcgtcctcacctcattggaactgcacacgttaggcaatcag
caggatttgctcgacgctgcatgtgaggtcctgaccgacccttctcttccggaactgttt
tggggaacagagccaacctctggccttgggatcatcctagacagtgtgtgtggaatgttt
ccccatcttctctccccgctcctgcagttattacgagcccttgtatcagggaaatcaaca
gccaaaaaggtatacagcttcctggataagatgtccttctacaatgaactttataagcac
aagccccatgatgtcatctcccacgaggatggaactctctggaggaggcagacatccaaa
cttctttaccctctagggggtcagactaaccttcgcatacctcagggcactttgggacaa
gtcatgctggatgaccgggcttacctagtacgctgggagtactcgtacagcagctggacg
ctcttcacctgtgagatcgagatgctccttcatgtagtttccactgcagatgtgattcag
cactgccagcgggtcaagcccatcatcgacctggttcataaggtcatcagtacagatctg
tccatcgcagatggcctcttgcccatcacatcccgcatctacatgctgctgcagcggtta
accacggtcatatccccacctgtggatgtcatcgcctcttgtgtcaattgcttgactgtt
ttggctgcccggaacccagcaaaggtttggactgatctgcgccacaccggcttcctccct
tttgtggtccacccggtctccagcatgagccagatgctcagtgctgaggggatgaatgcc
ggggggtatgggaacctcctaatgaacagtgaacagccccagggtgagtacggagtcacc
gttgccttcctgcgcctcatcaccacactggtcaagggacagctgggtaacacccagagc
caagggctggtgccttgtgtcatgtttgtgctgaaggagatgctgcccagctaccacaag
tggcgctacaactcccatggtgtgagagagcagatcggttgcctggtcctggagctgatt
cacgcgatactgaacctgtgccccgagatggacttacacaacagtcacatcccaagcctg
cagtccctgtgcatctgcagcctggcctacacggaagctggccagactgtcatcaacatc
atgggcattggggtggacactattgacatggtgatgggtgtgcaacaccgaagtgatgga
gtggacggccatgggcaaggccagctgctgatcaagacggtgaagctggcgttctctgtc
accaacaatgtcattcggctgaagcctccttccaatgtggtgtccccactcgagcaggcc
ctcacccagcatggtgcccacgggaacaatctcattgcagtccttgccaagtacatctac
cacaagcatgatcccgccctgcctcgtctggccatccagctgctcaaacgtctggccacg
gtggccccgatgtcggtgtatgcctgcctaggcaatgacgccgcagccattcgcgatgcc
ttcctgacgcgcctcaagagcaagattgaggacatgcgcatcaaagtcatgattttggaa
ttcctcacagttgctgtcgagacacagccgggcctcatcgaactgtttctcaacttggag
gtgaaggacagtgctgacggctcaaaggaattcagccttggcacttggagctgcctgcac
gtggtactggagctgattgacactcagcagcaggaccgctactggtgcccgcccctgctg
caccgtgccgccatctccttcctgcatgctctgtggcaggaccggcgcgatagcgccatg
cttgtcctcagaaccaaacccaagttttgggagaatctcaccagcccactatttgggact
ctttctcctccttcagaaacatccgagcccagtgtcctggaaacctgtgctctcatcatg
aagatcatttgcttggaactttactatgtagttaagggctcgttggaccagtcgctcaaa
gacactctgctgagattctcccgtgaggagcgatttacctactggtcaggctacgtgcgg
tctttggcggtgcacacggcgcagacggaaggcagcagctgcgccttctccttcgagtac
cagatgctcgtctcggcctggaggatgctgctcatcattgccaccagccacgccgagatc
ttgcacctgacggactctgaagtgcgccgccagctcttcctggacgttcttgatgggacc
aaggttctactcctggtcccaggctctgtgaactgcctgcacctgggctccatgctatgt
actctgctacttgtcctgctccgccagtggaagggagagttggggtctgtggacgaaatc
ctggggcccttgactgagatcctggaggccgtgctgcaggccgaccagcagctcatggag
aagaccaaggccagggtgttctctgctttcatcactgtgctgcagatgaaggagctgcga
gtgagcgacattccccagtactcagagctggtgctgagcgtatgtggggcgctccaggag
cagctgattgcactcttcgaccagacacgtcagagtctggctactggcagcagcaccgag
gacaaagacagcatggagacggacgacagctcccggacacgctctaaggaccagcgtgat
ggggtgtgtgtgctgggcctgcacctggccaaggagctgtgtgacgtggatgaggacggt
gactcgtggctgcaggtgacccggcggctgcccatcctgcccaccctcttcactgcactg
gaggtgagcctgcgcctcaagcagaacctgcacttcaccgaggcgtccctgcacctgctg
ctcacgctggcccgcacacagcagggtgccacagccgtggcaggagccggcatcatccag
agcatctgcctgccactcctcagcgtgtaccagctcagcagcaatggcacaggacaggcc
acagttacttcccggaagtctctggtggacgtgccgtcgtggccaggggtctaccgcctg
tccatgtccctgatggagcggcttctcaagactctgcgctacaacttcctgaccgaggcc
ttggactttctgggggtgcatcaggagcgcaccttacagtgcctcaatgcggtgaggacg
gtgcagagtgtggcctgcttggaggaggctgatcacacagtgggcttcatcctgcagcta
tccaacttcactaaggagtggcgcttccacctgccccagcttatgcgggacgtccaggtc
aacctgtgctacctgtgccaggcctgcacatccctgctgcacagccgcaagatgctgcaa
cactacctgcagaacaaaaatgggaacggtcgcccttcagctgccggcccccggctacag
cggcaattggccaccctgtccacctcgtctaagcaacccagtgctgacacagaggcctcg
aagcagcgggccttacacgcagtccaatacgccctccttaagatcctctgcaggaccttg
gcggccctgcgccacttcacccctgatgtctgccagatcctgctggaccagtccctggac
ctggccgagtacaacttcctgtttgccctgagcttcaccactcccacctttgactctgaa
gtggccccatcctttggcaccctgctggccacggttaatgtggctctcaacatgcttgga
gagctcgacaagaaaaaggagcctctaacacaggctgtcgggctcagcacgcaggcggac
gggagcaggacactgaaggccctcttgatgttcagcatggagaactgcttctacctcctc
atctcccaggccatgcgctacctgcgggacccggccgtgccatcccgggacaagcagcgc
atgaggcaggagcttagctccgagctgagcacgctgctctccagcctttcccgctacttc
cgccgtggtacccccagctcccctgcaactggggtcctcccctcgcctcagggcaagtgc
agctcctcgtccaaggccagcactgagagccaggaacccctgatccagctggtgcaggcc
ttcgtgcgccacgtgcagagatag
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integrated database retrieval system
