Suncus etruscus (white-toothed pygmy shrew): 126009587
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Entry
126009587 CDS
T09902
Symbol
SETX
Name
(RefSeq) probable helicase senataxin
KO
K10706
ATP-dependent RNA/DNA helicase, senataxin [EC:
5.6.2.5
5.6.2.3
]
Organism
setr
Suncus etruscus (white-toothed pygmy shrew)
Pathway
setr05014
Amyotrophic lateral sclerosis
Brite
KEGG Orthology (KO) [BR:
setr00001
]
09160 Human Diseases
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
126009587 (SETX)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
setr03021
]
126009587 (SETX)
Enzymes [BR:
setr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
126009587 (SETX)
5.6.2.5 RNA 5'-3' helicase
126009587 (SETX)
Transcription machinery [BR:
setr03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
126009587 (SETX)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
SEN1_N
AAA_19
UvrD-helicase
AAA_30
AAA_22
ResIII
NAT10_TcmA_helicase
AAA_16
SLFN-g3_helicase
Zf_WRKY19
UvrD_C_2
nSTAND3
Motif
Other DBs
NCBI-GeneID:
126009587
NCBI-ProteinID:
XP_049630060
LinkDB
All DBs
Position
5:complement(19292881..19344600)
Genome browser
AA seq
2620 aa
AA seq
DB search
MTTCCWCTPGGSSTISFLKQYATQTCPSSEFQTANEDLCFCLECVIEYHKARDELPFYHE
VLWELEIARITNYFEKSMNAELEDDDEVYIVDNNGDAQPLDFATGHDFENKIRVPLLEIL
KFPYLLLDERVNELCVEALCRMEQANCSFQVFEKHPGIYLFLVHPNEMVRRWAILTARNL
GKVDRDDYYDLQEVLTCLFKVIELGLLESPDIYTSSVLEKGKLILLPSHMYDATNYKNYW
LGICMLLTILEEQAMDSLLLGSDKQNDFMHSILHTMERQSDDDSMDPFWPALHCFMVILD
RLGSKVWGQLIDPIEAFQTIINNTSYNREIQAIRRSSLRTKFEPEPHLDGMVTCSQIVYS
YNPEKNKKDSGWRSAICPDYCPNMYEEMETLASVLQSDIGQDMRVHNSTFLWFIPFVQSL
MDLKDLGVAYIVEVIHHLHSEVKDVLNQTDAVCDKVTEFFLLILVSVIELHRNKKCLHLL
WVSSQKWVEAIVKCAKLPTSAFARTAEKSTPSTPKGTPVFSTLSLHTMPSNSVQLACVQL
IRSLLKEGYQLGQQTLCKRFWDKLNLFLRGNLSVGCQLTARETHELQLCLKQIIRNIKLK
VPQHNALVDLAPPSKSSLASCSKDESEGNEKPREDLLCLESSRQVLFKELVKADECQVPE
EVSVRAPKAIRENEQKDLKLEDHPSTEPCFKRSHENDLTKRAQEPAQISTGKQEFLEAND
ALSKGSQGDSDRGTIISTHALAAPSSNSLANEEPSLKNDTLGKTFRVTKAQKDKICAKLS
HVIKQHRKSTVVNNNVFDLKETLMVSSIESVYSRKSTVDPQGEDGLFHRLCPDAHSLLDE
KNGDQKCSKPSVLQKKQLNKDFDIFSSHKNSSRIQKSGGGGGDDDDDGDDNKDLVSLTEM
TSFMRKTSASEDPGSSLDAQEVVTHKISKGVSMDLQDQPFSLTPKADALSDSQVDRDIHN
LSLLAQVSAITFPSDSSPQSLCQLQRKVREEKRCFTAKQSSGRDASESQIIIISDSDEEG
EEMAPSSEKRLEQVNVALEEQEPGCPTPIADTNMESKAAEEEEAERLLQFEDSDSQVFEF
ETQYDVFSVWQDQADKNSDPEGEESFSPSHGVEVTNEQVQDAEDASEGAISKAAEDLMEQ
AEPQSSSSRISVEELYEIGVKKSKRKRSEKASTRKSLKPSKAARKEDPMDISQEVGLKAK
VVKRAKPAPSTSTDSRATALKKALSKPGTSSKSVRKGPASKSSKKMKSETKKAPKKSNYI
RCRTSPAVVLEKKHRQHPEPTLTVEKLGLKKPPRKAVILSQPSLTKVKLLRNYGQMAGAV
DIQNNTKIITPQTHSVRNNKKLLVMQEPCMRKQVGASAPRKQPSLIHSEGTKGREAGPPA
AQRSATSGSEPAQYDCRRGTDVFTLSTVASEEDPVKDTAISPGSDGLYLRGLSSSDRMEG
GLRPADWPANPASETPVGPNSVLKAQQVAVPKEGHPDSDSDLEDEALFLTQHDPCDMDLC
SQMESDHMQGSDIAQREGTAVQASTSPALPQLEPLRSTMCKHKDCVETAQNQGDFCSKHV
DIEVFRKPALPPTQLRTRPSTTKVFSSSSSSRLANLSRSLESSSTTPSSAKSKPSGVPPV
QKFLPPPPPLPPPPPPPEPPLKTPAKEKGLCSVLFSSAPSVVSRPLFRPLCAETRVQSTN
APVSVLLSAQSITDAFIKEVLKWKHEMFVNFSQYGPPASLCQAITRPVPVRFQNAVEYYN
VFFPLVILNTFETVAQEWSSSSSKSYVLLFRKFPADYKKYWEFVVHLDENELAKQLHPKE
NDLVFLVSECRPGERKDFARKHKPESHEYYCGFVHKFRRTSSMRSGKFECCLSIQTQERL
PINVNEPMRCVVVSSLVTTQRKLKAMSLLGSRSQLARAILNPNPMDFCTKDLLNTASERI
VSLHNYNEDQKKAIETAYAMVKNSPSVAKICLIHGPPGTGKSKTIVGLLSRLLTENQRRG
RSSENSNAKIKQNRVLVCAPSNAAVDELMKKIIIEFKEKCKEKNHPQGNCGDINLVRLGP
EKSINTEVLRFSLDNQVSHRMKKAQPSHVQEMYRRKEYLDRQLDELSRQRALFRGARKIQ
RQELDEKIARVSKERRELAVKIKEVQGRPQRTQSLVILESHIICCTLSTSGGILLESAFR
GQGGMPFSCIIVDEAGQSCEVETLTPLIHRCNKLILVGDPKQLPPTIISMKAQEFGYDQS
MMARFYKLLEENVEDNTIGRLPIVQLTVQYRMHPDICFFPANYIYNKNLRTSRLTETLRC
SSEWPFQPYLVFDVGDGAERRDNESYVNAQEIKLVMEIIKLIKEERKDLTFRQIGIITHY
KAQKTMIQKDLTREFDKKGPAEVDTVDGFQGRQKDCIIVTCVRANSMPGSVGFLSSLQRL
NVAITRAKYSLFILGHLRTLMDSTHWNHLIQDAQRRGAIVKTCNRNYRHDALKILKLKKP
SLQRSLTHPPAATPEAARPQDGLPGSTLDNVSAYYLTPPPDSGESVVPAKDPEKSSVQDL
PRDPRLLRRLGISLDPRCQSTQPPRAILGQGEQPTCLEGLPELGGTLNGSGLDLHGVPGA
PRVSDLHEWHSGGTFPQRTMDWEKRHLPEEDGHTKRKRLL
NT seq
7863 nt
NT seq
+upstream
nt +downstream
nt
atgacgacttgctgctggtgtaccccaggcggcagctctaccatcagctttctgaagcaa
tatgcaacccagacgtgcccgagcagtgagtttcagacggccaatgaagatctttgcttc
tgcttggagtgtgtgatagaataccacaaggccagggatgagctgcccttttatcatgag
gtgttatgggaattagaaattgcccggattacgaactactttgaaaaatccatgaacgcg
gaactcgaggatgatgatgaggtgtatatagtggacaataacggagatgcccagcccttg
gactttgccactggccatgactttgagaacaagatccgggttcctcttctggagatcctg
aagttcccgtatctgctcttagatgaacgtgtcaatgagctgtgtgtggaggcgctgtgc
cggatggagcaagccaactgctccttccaggtatttgagaagcacccggggatctatctg
tttctggttcaccccaatgaaatggttcggcgttgggctatcctgaccgcaagaaacctg
ggaaaagtggacagagatgattattatgacttgcaggaggttctgacttgcctgtttaaa
gtcattgagctgggtctgttagaaagtccagacatttatacttcttctgtccttgagaag
ggtaaactgattcttttgccgtcacacatgtatgatgctaccaactacaaaaactactgg
ttaggtatttgcatgctgctgaccattctggaggagcaggccatggactcgttgttgctg
ggctcggataagcagaatgactttatgcattcaatccttcacaccatggaaaggcagtcg
gatgatgatagcatggatcctttctggccagccctacactgtttcatggtgattctagac
cgcctgggatcaaaggtatggggccagcttattgatccaatcgaggcttttcaaaccatc
atcaacaacacgagctacaatagagagatccaagctattcggagaagctctttaaggact
aagtttgaaccggaaccacacttggatggtatggtgacttgcagccagattgtatacagt
tacaatcctgaaaagaacaaaaaggattcagggtggcggtcagccatctgcccagattat
tgcccaaatatgtatgaggagatggaaacgctcgccagtgtgcttcagtctgacatcggc
caggacatgcgggtgcacaacagcaccttcttgtggttcatcccctttgtccaatccctc
atggacctgaaggacttgggtgtggcttacatcgtagaggtcattcaccacctacattca
gaagtcaaagatgtcctcaaccaaacagatgccgtgtgtgataaagtcacagaattcttc
cttctcatcttggtctcagtgatcgaactgcaccgaaacaaaaagtgtttgcatttgctg
tgggttagttctcagaagtgggtggaagctattgtgaaatgtgccaagcttccaaccagt
gctttcgcacggactgctgagaaatcgacgcccagtacccccaaaggcaccccagttttc
tctacgctgtcgctacacaccatgccatccaactctgtgcagctggcctgcgtacagcta
atcagaagtcttcttaaggaaggctaccagcttggccagcagactctatgtaagcgattc
tgggacaagctcaacttgttcctgagaggcaacctctctgtgggttgtcagctgacagct
cgggaaacccacgagctacagttatgtttgaaacaaatcattagaaacatcaagttgaag
gtccctcagcataatgctcttgtcgacctggctcctccaagcaaaagctctcttgcctct
tgttctaaagatgagagtgaaggaaatgagaagcctagggaagatctgctctgtctggaa
agttctagacaagttctttttaaagagctagtgaaagctgatgagtgccaggtgcctgag
gaggtgtcggtgagagcaccaaaagctatcagagagaatgagcagaaagatctgaagctg
gaagaccatccctccactgaaccttgtttcaagcggagtcatgaaaatgatttgaccaaa
agagcacaagagccagctcaaatcagcacagggaagcaggagttcttagaagcgaatgat
gctttaagtaaaggctcccaaggggactctgatagaggaacgatcatatccacacacgca
ttagctgctcccagctccaactccctggcaaatgaggagccttctcttaagaatgatact
cttggcaaaaccttcagagtcactaaggcacagaaagataagatttgtgctaagttgtca
catgtgataaagcaacacaggaaaagtactgtggttaacaataatgtcttcgacttaaag
gaaaccctgatggtgtccagcattgagagtgtttattcgagaaaaagcaccgtagatcct
caaggggaagatggcttatttcatcgtctctgtccagatgcacacagtcttctggatgag
aaaaacggagaccagaagtgttcaaaaccctcagtgctgcaaaagaaacaattgaacaaa
gattttgatattttctcctcccacaaaaatagttcccggatccagaaaagtggtggtggt
ggtggtgatgatgatgatgatggtgatgataataaagatttggtctcacttacagaaatg
accagttttatgaggaagacctctgcttcagaagaccctgggagtagccttgatgcccaa
gaggtggtcactcacaagatcagcaagggtgtttctatggacttgcaagaccagcccttc
agcctcactccaaaggctgacgctctatcagattctcaggtagaccgagatatccacaac
ttatctttactggcgcaagtcagcgcgatcacatttccttcagactcttctccacaaagt
ttgtgccagctccagaggaaagtcagagaggagaaaagatgtttcacggctaagcagagt
agtggcagggatgccagtgagagtcagattattataatttccgattctgatgaagagggg
gaagaaatggccccgagttctgagaagcgtttggaacaagtgaatgtggccttggaggag
caggagccaggatgcccaactccaatagctgacacaaacatggaaagtaaagcagcagag
gaagaagaggccgagcgtcttctgcagttcgaggactcagactctcaggtttttgagttt
gaaacccaatatgacgtattttcagtttggcaagatcaagcagataagaattccgatcca
gagggggaagaaagtttctctccgtcccatggagtggaagtcacaaatgagcaggttcag
gatgcagaggatgcatctgaaggggccatttccaaagcagcagaggaccttatggagcag
gcagaaccacagagtagtagcagcagaatctctgttgaggaactgtatgaaattggcgtt
aagaaaagcaagagaaaacgatcagaaaaagccagtactagaaagtccttaaagccttcc
aaagcagccagaaaagaggacccaatggatatttcccaggaggtgggtctgaaagcaaaa
gtagtgaaaagggccaagccagcaccttccacttccactgattcaagagccactgccttg
aagaaggcgctttcaaagcctggcacttcgtctaagtccgtccggaagggcccagcttct
aagagctctaagaagatgaaatcggagactaagaaggcgccaaaaaaaagtaattacata
cgttgtcggactagtcctgctgtcgtgctagaaaagaaacaccgtcagcatcctgagccc
acattaacggtggagaaactgggcctgaagaagccccctcgcaaggccgtgattctgtct
cagccatctcttaccaaagtcaagctgttacgtaactatggccagatggcgggagcagtt
gatatccagaacaatactaaaataatcactccccagactcactcggtcagaaataacaag
aaattgctagtcatgcaagagccgtgcatgcgaaagcaggtgggggccagtgcaccaagg
aagcaaccaagcctcatccatagtgaagggacaaagggcagggaggcagggccacctgca
gcacagagatctgcaacttcaggctcagaaccagctcagtatgactgtaggcgaggaacg
gatgtttttactctgagcactgtggcctctgaagaagacccagtgaaagacacagccatt
tcaccaggtagtgatggactttatcttcggggcttgagcagctctgacaggatggaggga
ggactaagaccagcagactggccggccaatcctgcctcagagacccctgtggggcctaac
agcgttctaaaggcacagcaagtggccgtccccaaggagggccatcctgattctgacagc
gacctagaagatgaggctctgtttctaactcagcacgatccctgtgacatggacttatgt
tcccaaatggaatctgaccacatgcaaggatcagacattgctcagagggagggcactgca
gtgcaggccagcacatccccagcgctgcctcagttggagcctctgaggagcaccatgtgc
aagcataaggactgtgtagaaactgcccagaaccagggcgacttctgctccaagcacgtg
gacattgaagtgttccgcaagcctgccttgccgcccactcagctgagaaccagaccctcc
accaccaaggtcttcagctccagtagcagttcacggctggctaatctgtccaggtctttg
gaaagtagctctacaaccccatcttcagcaaaaagcaagcccagtggggtgccgcctgtt
cagaaattcctcccaccaccccctccccttccccctccccctcccccacctgaacccccc
ctgaagactccggccaaggagaagggtctgtgcagtgttcttttctcttcagcaccctct
gtggtctccagacccctgtttaggcctctctgtgctgaaactcgggttcagtccacaaac
gccccagtcagcgtacttctgtccgcgcaatccatcacagatgcctttatcaaagaggtc
ctcaagtggaagcatgaaatgttcgtgaattttagccagtatgggcctcctgccagcttg
tgccaagccatcaccagacctgtgccagtgcgatttcaaaacgctgtagagtattacaat
gtcttcttccctttagtgatcctgaatacttttgaaacagtggcacaggaatggagcagt
tcttcaagtaaatcatatgtattgctgtttcgaaaatttcctgctgattataaaaaatat
tgggagtttgtggtccatcttgatgagaacgaactggccaagcagcttcatccaaaggaa
aatgatctggtgtttttggtttctgagtgccggcctggagagaggaaggattttgcgagg
aagcacaagccggagtcccatgaatactactgtggcttcgtgcacaagttccgccgcaca
tccagcatgcgcagtggcaagttcgagtgttgcctctccatccagacgcaggagcggctg
cccataaatgtcaacgagcccatgcgttgtgttgtcgtcagttccttggtaacgacacag
agaaagttgaaagccatgtctctgctgggtagccgcagtcagttggccagagccattctg
aaccccaaccccatggacttctgtacaaaagacctgctgaacactgcatcagagagaatc
gtttccttacacaattacaacgaagaccagaagaaagccattgaaactgcatacgccatg
gtgaagaattctccgtccgtggccaagatctgcttgatccatgggcctcccggcactgga
aagtcaaagaccattgttggcctcctgtcccgtctgctgacagagaaccagaggagggga
cgctccagtgaaaactccaacgccaaaatcaagcaaaatcgggtacttgtgtgtgcgcct
tccaatgcggctgtagacgaactcatgaaaaagattataatcgagttcaaagaaaaatgt
aaagaaaagaaccaccctcagggtaactgtggagatatcaatttagtacgtctgggtcca
gaaaaatccatcaacactgaagtcctaagattcagcttagacaatcaagttagccacaga
atgaaaaaagcccagccttctcatgtccaggagatgtacaggaggaaggagtatctggac
cgtcagctggatgagctttcccgccagcgagctctattccgaggggcaaggaaaattcag
agacaagaattagatgaaaaaattgccagagtttccaaagaaaggcgggaactggcagtt
aaaatcaaagaagtacagggccgtccccagagaacgcagagcctggtgatcctggagtcg
cacatcatctgctgcacactgagcacaagtggtggcatattgctcgagtcagctttccga
ggccagggcggcatgcccttcagctgcatcattgtcgatgaggctgggcagtcctgcgaa
gtggagactctcacgcctctcatccatcgctgcaacaagctcatcctggttggggacccc
aagcagctccccccaacaatcatttccatgaaagctcaggaatttggctatgaccaatcg
atgatggcccgtttctacaaactgctggaggagaatgtggaggacaacacgatcggccgt
ctccccatcgtgcagctcacagtgcagtaccgaatgcaccctgatatctgcttcttcccc
gccaactacatctacaacaagaacctgaggaccagtaggctgactgaaaccttacgctgt
tcatcagagtggcccttccagccctacctggtgtttgacgttggtgatggtgcagagaga
cgggacaatgagtcctatgtcaatgcccaagaaatcaaactggtgatggaaatcattaaa
ctcatcaaagaagaacggaaggacctgactttccggcaaatcggcatcatcacccattat
aaagcccagaagacaatgatccagaaggacctgactcgggaatttgataagaaaggacct
gcagaagtggacaccgtagatggcttccaggggcgccagaaggactgtatcattgtaact
tgcgtgcgagccaattccatgccaggctccgttgggtttttgtccagtttgcagagactg
aatgttgccatcacgcgagccaagtacagcctcttcatccttgggcatctgagaaccctg
atggacagcacacattggaaccatctgatccaggacgcgcagcggcgtggtgctatcgtg
aagacctgcaaccgcaactaccggcacgatgccctgaagatcctgaagctgaagaagccc
agcctgcagcggagcctcacacacccccctgctgccactcctgaggctgcccggccccag
gacggcctgcccggctccactctggacaatgtgtccgcctactacctcacaccccctcct
gactctggggagtctgtggtccccgccaaggacccggagaagtcgtcagtgcaggacctt
cctcgggatccccgcctgcttcggagactgggcatctccctggatccccggtgccagagc
acacagccccccagagccatccttgggcaaggggagcagcccacctgcctcgaggggctg
ccggagctgggtggcactttgaacggcagcggactcgacctacatggggtgccaggggcc
cccagggttagtgacttgcatgaatggcactctggaggcaccttcccacagaggaccatg
gactgggaaaagaggcacctgcccgaggaagatggtcacaccaagagaaagaggctcctt
tag
DBGET
integrated database retrieval system
