Suncus etruscus (white-toothed pygmy shrew): 126009596
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Entry
126009596 CDS
T09902
Symbol
GAPVD1
Name
(RefSeq) GTPase-activating protein and VPS9 domain-containing protein 1 isoform X1
KO
K27566
GTPase-activating protein and VPS9 domain-containing protein 1
Organism
setr
Suncus etruscus (white-toothed pygmy shrew)
Brite
KEGG Orthology (KO) [BR:
setr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
setr04131
]
126009596 (GAPVD1)
Membrane trafficking [BR:
setr04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
126009596 (GAPVD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RasGAP
VPS9
DUF5601
DUF5740
DUF5996
Motif
Other DBs
NCBI-GeneID:
126009596
NCBI-ProteinID:
XP_049630071
LinkDB
All DBs
Position
5:13373436..13473286
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AA seq
1488 aa
AA seq
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MVKLDIHTLAHHLKQERLYVNSEKQLIQRLNADVLKTAEKLYRTAWIAKQQRINLDRLII
TSAEASPAECCQHAKVLEDTQFVDGYKQLGFQETAYGEFLSRLRENPRLIASSLVAGEKL
NQENTQSVIYTVFTSLYGNCIMQEDESYLLQVLRYLIEFELKESDNPRRLLRRGTCAFSI
LFKLFSEGLFSAKLFLTATLHEPIMQLLVEDEDHLETDPNKLIERFSPAQQEKHFGEKGS
DRFRQKVQEMVDSNEAKLVALVNKFIGYLKQNTYCFPHSLRWIVSQMYKTLSCVDRLEVG
EVRAMCTDLLLACFICPAVVNPEQYGIISDAPINEVARFNLMQVGRLLQQLAMTGSEEGD
PRTKSSLGKFDKGCVAAFLDAVIGGRAVETPPLSSVNLLEGLSRTVVYMTYSQLLTLVNF
MKSVMSGDQLREDRMALENLLSNLPQAKLGAIGSLEMTPYSTPQLSPATTPANKKNRLPI
GQHLAAITAWESSATNLTAHITLVAPFATRSRSRTNVLMDLHMDHEGSSQETIQEVQPEE
VLVISLGTGPQLTPGMMSETEVLNMQLSDGGQGDVPVDENKLHGKPDKTLRFSLCSDNLE
GISEGPSNRSNSVSSLDLEGESVSELGAGPSGSNGVEALQLLEHEQATTQDNLDDKLRKF
EIRDMMGLTDDRDISETVSETWSTDVLGSDFDPNIDEDRLQEIAGAAAENMLGSLLCLPG
SSSLLLDPCTGSTISETTSEAWSVEVLPSDSEAPDLKQEERLQELESCSGLGSTSDDTDV
REVSSRPSTPGLSVVSGISATSEDIPNKIEDLRSECSSDFGGKDSVTSPDMDEVAHGAHP
LTSPPSQSESLLAMFDPLSSHEGAAAVVRPKVHYARPSHPPPDPPILEGAVGGNEARLPN
FGSHVLTPAEMEAFRQRHSYPERLVRSRSSDIVSSARRPMSDPSWNRRPGNEERELPSAT
VAGASMGATPHSSSSSPSKDSSRGETEERKDSDDEKSDRNRPWWRKRFVSAMPKAPIPFR
KKEKQEKDKDDLGPDRFSTLTDDPSPRLSAQAQVAEDILDKYRNAIKRTSPSEGALANYE
SAEVMGDGESAHDSPRDEGLQNLSADDLPDSASQAAQPQDSAFSYRDAKKKLRLALCSAD
SVAFPVLTHSTRNGLPDHTDPEDNEIVCFLKVQIAEAINLQDKNLMAQLQETMRCVCRFD
NRTCRKLLASIAEDYRKRAPYIAYLTRCRQGLQTTQAHLERLLQRVLRDKEVANRYFTTV
CVRLLLESKEKKIGEFIQDFQKLTAADDKTAQVEDFLQFLYGAMAQDVIWQNASEEQLQD
AQLAIERSVMNRIFKLAFFPNQDGDILRDQVLHEHIQRLSKVVTANHRALQIPEVYLREA
PWPSAQSEIRTISAYKTPRDKVQCILRMCSTIMNLLSLANEDSVPGADDFVPVLVFVLIK
ANPPCLLSTVQYISSFYASCLSGEESYWWMQFTAAVEFIKTIDDRKSP
NT seq
4467 nt
NT seq
+upstream
nt +downstream
nt
atggtgaaactggatattcatactttggcccaccacctcaagcaggagcgcttgtacgtc
aactcagagaagcagctcattcaaaggcttaatgcagatgtacttaagactgccgaaaag
ttgtatcggactgcatggattgctaagcaacagaggattaatttggatcggcttattata
accagtgcggaagcttcccctgctgaatgttgccagcatgccaaggtcttggaagacacg
cagtttgttgatggctataagcaactgggcttccaggagaccgcatatggagagttcctc
agccgattaagggaaaaccctcgtctcattgcctcctcgttggtcgccggagagaaactt
aatcaggagaacacacaaagtgtcatttacacagtttttacctctctctacgggaactgc
attatgcaagaagatgaaagctacctccttcaggttttgagatacttgattgaatttgag
cttaaggaaagtgacaacccgaggcgactcttgaggagagggacttgcgccttcagcatc
ttgtttaagcttttctcggaaggactcttttcggccaagctttttctcacggctacttta
cacgagccaatcatgcagttgctggtggaagatgaagatcacctggagacagatcccaac
aagctcattgagaggttctccccggcgcagcaggagaagcactttggagagaaaggctcg
gatcggttcaggcagaaggttcaagagatggtggattccaacgaggccaagctcgtggcc
ttggtgaacaaatttattggctatctcaagcagaacacgtactgttttccgcatagtctg
aggtggatcgtgtcgcagatgtacaaaaccctttcctgtgtggaccggctggaagtgggg
gaggtcagggcgatgtgcactgacctcctgttggcctgcttcatttgtcctgcagttgtc
aacccggagcagtacggcatcatttctgacgctcccattaacgaggtggcaagatttaac
ctgatgcaggttggccgccttctgcagcagctggcgatgactggctctgaggagggagat
cctcggacgaagagcagcctggggaaatttgacaagggctgcgttgctgctttcctagat
gctgtcatcgggggccgtgcggtggagacccctcccctgtcttctgtcaaccttctggaa
gggttgagcagaactgtggtgtatatgacctacagtcagcttctcactctggtgaatttt
atgaagagtgtgatgtccggagatcagctgagagaagatagaatggctcttgaaaatctc
ttgtcaaatctaccccaggccaagctgggggccatcggcagtctggaaatgaccccctat
agtacccctcaactctctccagcaacaactccagcaaataaaaagaaccgattgcctata
ggacaacacttagcagccatcactgcttgggagtcctcagccaccaaccttacagctcat
atcactctagtagccccatttgcaactcggagcagaagtcgcacgaatgttcttatggac
ttacatatggaccatgaaggatcgtctcaagaaaccatccaggaggtgcagccggaagaa
gtactggtcatttccttaggaacgggcccacagcttaccccagggatgatgtcagaaact
gaggtcctaaacatgcagctttcggatggaggacaaggagatgtccctgtcgatgagaac
aaactccacggtaaacctgataaaaccttgcgcttttccctctgcagtgataatctggaa
ggaatatctgaaggtccgtccaatcgatccaactcagtatcttctttagacctggaagga
gagtctgtgtcagaactcggagctggaccttctgggagtaacggagtcgaagctctacag
ctgttagaacatgagcaagctacaacacaagataatctggatgataaactaaggaagttt
gagatccgggacatgatgggactgacagatgatagggatatatcggagacggtgagcgaa
acctggagcacagatgtcttgggaagtgattttgaccctaacattgatgaagatcgtttg
caagaaattgcaggggcagcagcagagaacatgctgggcagtctactgtgcctgccaggt
tccagctcactgcttctggacccctgcactggctcaaccatctcagagacaacaagtgaa
gcgtggagcgtagaggtattgccaagtgactcagaggccccggatctgaagcaggaggag
cgcctgcaggagctggagagctgttctggcctgggcagcacctctgacgacacggacgtc
agggaggtcagttcccgccccagcacgccaggcctcagtgttgtgtcgggcataagtgca
acttctgaggatatccccaataagattgaagacctgagatctgagtgcagctctgatttt
ggaggcaaagactctgtcactagcccggacatggatgaagtagctcatggtgcccaccca
ctgacctcgcctccttctcagtccgagtccctgcttgccatgtttgaccccctgtcttca
catgaaggggctgcggctgtggtacggccgaaggttcactacgcccggccatcacatcca
ccaccagaccccccaattctggaaggagctgtggggggcaatgaggccaggttgcccaac
tttggttcccatgtcttaactccggctgaaatggaggcctttaggcaaagacactcttac
cccgagagattggttcggagcaggagttcggacatcgtgtcttctgcccgccgccccatg
agtgaccccagctggaaccggcgtccagggaatgaggagcgagagctcccctcagccaca
gttgccggggcgtccatgggggccacgcctcactcatcgtcgtcgtccccgagcaaggac
tcctcgagaggagagactgaagagcgcaaggatagtgatgatgagaaatcagacaggaac
agaccttggtggagaaaacgttttgtttcagcaatgcctaaagctcctataccatttaga
aagaaagaaaaacaagaaaaagacaaagatgatctggggcctgacagattctcaacactc
acagatgaccccagcccgaggcttagtgcacaagctcaggtcgcggaggacattctggac
aagtacagaaacgccatcaaacgcaccagccccagtgaaggagcgttggcaaactatgaa
agcgcagaggtcatgggagatggcgagagtgcacacgattctccccgagacgagggactg
cagaacctgtctgctgatgacttgccggattctgccagccaagcggcacagccccaggac
tcggccttctcttaccgagatgccaaaaagaagctgaggctggctctttgctctgcggac
tcagtggctttcccagtgctcacccattcaacgaggaacggcttaccagaccacacggac
ccagaagacaatgaaattgtatgtttcttaaaagttcaaatagcagaggccattaattta
caagataagaacctaatggcgcaactccaggaaaccatgcgctgcgtgtgccgctttgac
aacaggacctgcaggaagctgctggcgtccatcgctgaggactacaggaaaagggcgccc
tacattgcttatctcactcggtgccggcaagggctgcagaccacgcaggctcacctggaa
aggctgctgcagagggttttgcgggacaaagaggtggccaatcgctacttcaccactgtc
tgtgtgcgcctgctgcttgagagcaaagaaaagaagattggggagttcattcaagacttc
cagaaactcacagcagctgacgataagacggctcaggtagaggacttcctgcagttcctc
tacggcgccatggcccaggatgtcatttggcagaacgcaagcgaggagcagctgcaggac
gcccagttggccattgagcggagcgtgatgaaccgcattttcaagctcgccttcttccct
aaccaggacggcgacattcttcgtgaccaggttcttcatgagcacattcagcgactgtct
aaagtcgtgacggcaaatcacagagcgcttcagataccagaggtttatcttcgggaggcg
ccgtggccatcggcacagtcagaaatcaggaccataagcgcttacaagaccccccgggac
aaagtgcagtgtatcctgagaatgtgctccaccatcatgaacctcctgagcctggccaac
gaggattccgtcccaggagccgatgactttgtccctgtgctggtctttgtgttaatcaag
gcaaacccgccttgcttgctgtcgactgttcaatatatcagtagcttttatgccagctgc
ctgtctggtgaggagtcctactggtggatgcagttcacagcagcagtggaattcatcaag
accatcgacgaccggaagtcaccctga
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