Suncus etruscus (white-toothed pygmy shrew): 126009600
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Entry
126009600 CDS
T09902
Symbol
RC3H2
Name
(RefSeq) roquin-2
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
setr
Suncus etruscus (white-toothed pygmy shrew)
Brite
KEGG Orthology (KO) [BR:
setr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
setr03000
]
126009600 (RC3H2)
04121 Ubiquitin system [BR:
setr04121
]
126009600 (RC3H2)
Transcription factors [BR:
setr03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
126009600 (RC3H2)
Ubiquitin system [BR:
setr04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
126009600 (RC3H2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-CCCH
zf-RING_UBOX
zf-RING_2
zf-CCCH_4
Prok-RING_4
zf-C3HC4
zf-C3HC4_4
zf_CCCH_4
zf-CCCH_UNK
Xin
zf-C3HC4_2
Motif
Other DBs
NCBI-GeneID:
126009600
NCBI-ProteinID:
XP_049630081
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All DBs
Position
5:complement(11081151..11129098)
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AA seq
1188 aa
AA seq
DB search
MPVQAAQWTEFLSCPICYNEFDENVHKPISLGCSHTVCKTCLNKLHRKACPFDQTAINTD
IDVLPVNFALLQLVGAQVPDHQSIKLSNLGENKHYEIAKKCVEDLALYLKPLSGGKGVAS
LNQSALSRPMQRKLVTLVNCQLVEEEGRVRAMRAARSLGERTVTELILQHQNPQQLSANL
WAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKTSIG
HVVQLLYRASCFKVTKRDEDSSLMQLKEEFRSYEALRREHDAQIVHIAMEAGLRISPEQW
SSLLYGDLAHKSHMQSIIDKLQSPESFAKSVQELTIVLQRTGDPANLNRLRPHLELLANI
DPNPDAVSPTWEQLENAMVAVKTVVHGLVDFIQNYSRKGHETPQPQPNSKYKTSMCRDLR
QQGGCPRGTNCTFAHSQEELEKYRLRNKKINATVRTFPLLNKVGVNNTVTTTAGNVVSVI
GSTETAGKMVPSTNGISNAESSVSQLIPRSTDSSLRALETVKKVGKVGTNGQNAAGSSAE
SVPENKIGSPPKTPVSNVVATSAGTSSVGTELNSVPPKSSPFITRVPVYPQHSENIQYFQ
DPRTQIPFEVPQYPQTGYYPPPPTVPAGVAPCVPRFVRSSNVPESSLPPASMPYAEHYNS
FSPRDRMNSSPYQPPPPQPYGPVPPVPSGMYAPVYDSRRIWRPPLYRDDIIRSNSLPPMD
VMHSSVYQTSLRERYNSLDGYYSMACQPPNEPRTTVPLPREPCGHLKTSCEEQIRRKPEQ
WAQYHTQKASLVSSTLPVATQSPTPPSPLFSVDFRADFSDSVSGTKFEEDRLSHYSPWSC
GTIGSCINAIDSEPRDVIANSNAVLMDLDSGDVKRRLHLFETQRRTKEEDPIIPFSDGPI
ISKWGAISRSSRTGYHTTDPVQATASQGSATKPISVSDYVPYVNAVDSRWSSYGNEATSS
AHYIERDRFIVTDLSAHRKHSSTGDLLSIELQQAKSNSLLLQREANALAMQQKWNSLDEG
RHLTLNLLSKEIELRNGESDYVEDITDTKPDRDIELELSALDTDEPDGQGEHIEEILDIQ
LGIGSQSDQLMNGTAVENGHTVQQHQKESQEQKRQSLGEEHVILEEQKAVMPVTTCFSQP
LPVSISNASCLPITASVSVGNLILKTHVMSEDKKDFLKPVANGKMVNS
NT seq
3567 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtgcaggcagctcaatggacagaatttctgtcctgtccaatctgctataatgaa
ttcgatgagaatgtgcataaacccatcagcttaggttgttcacacactgtttgcaagacc
tgcttgaataaacttcatcgtaaagcttgtccttttgaccagactgccatcaacacagac
atcgatgtgcttcctgtcaattttgcacttctccagttggttggagcccaggtaccagat
catcagtcgataaagttaagtaatctcggtgagaacaaacattacgagattgcaaagaaa
tgtgttgaagacttggcactctacttaaaaccactaagtggaggtaaaggcgtagctagt
ttgaaccagagtgcactgagccgaccaatgcaaaggaaattggtgacccttgtcaactgt
cagttggtggaggaagaaggtcgagtaagagccatgcgagcagcccgttcccttggagaa
agaactgtgacagaactaatactgcagcaccagaaccctcagcagttgtctgccaacctc
tgggctgctgtcagggctcgaggatgccagtttctagggccagctatgcaagaagaggct
ttgaagttggtgttgttggcattagaagatggttctgctctctcaaggaaagttctggta
ctttttgttgtacaaagactagaaccaagatttcctcaggcatcaaaaacaagtattggt
catgttgtgcaactactgtatcgagcttcttgttttaaggttaccaaaagagatgaagat
tcttctctgatgcagctaaaggaggagtttaggagttatgaggcattacgcagagaacat
gatgcccagattgttcatattgctatggaagcaggactccgcatttcacctgagcagtgg
tcctctcttctttatggtgacctggcacataagtcacacatgcagtctatcattgataag
ctgcagtctccagaatcatttgcaaagagtgtccaggagttgacgattgttttgcaacgg
acaggtgacccagctaacttaaatagactgaggcctcatctagaacttcttgcaaatata
gaccctaatccagatgctgtttcaccaacttgggagcaactagaaaatgcaatggtagct
gttaaaacagtggttcatggccttgtggatttcatccaaaattacagcagaaaaggccat
gagacacctcagcctcagccaaacagcaaatataaaactagcatgtgccgagatctgcga
cagcaaggagggtgtccacgaggaacaaattgtacttttgcccattctcaggaagagctt
gaaaagtatcgattaaggaacaaaaagatcaatgcgactgtaagaacatttcctcttcta
aataaagttggtgtaaacaacactgttacaaccacagccggaaatgtcgtttctgtcata
ggaagtactgaaacagccgggaaaatggttccgagtacaaacggaatttcaaatgcagaa
agcagtgtttcccagttaatcccacgtagtactgacagttcattaagagctctggaaact
gtgaagaaagtggggaaggttggcacaaatggtcagaatgctgctggatcttctgcagag
tctgtacctgaaaataaaattggttctccacccaagacacctgtaagtaatgtagtggct
acctcagctgggacctcttctgttggaacagagctaaattctgtgcctccaaaatccagc
ccatttataactagagtaccagtatatcctcagcattctgaaaacattcagtattttcaa
gatccaaggactcagataccctttgaagttccacaatatccacagacaggatactatcca
cctccgccaacagtaccagctggtgtggctccctgtgttcctcgctttgtgaggtccagc
aatgttccagagtcctccctcccacctgcttccatgccatatgctgagcattacaactca
ttttcccctcgagatcgaatgaattcttctccataccaacctcctcctcctcagccgtat
ggaccggttcctccagtaccttctggaatgtatgctccagtatatgatagcaggcgcatc
tggcgcccacctttgtaccgagatgacattattagaagcaattctttacctccaatggac
gtgatgcactcatctgtctaccagacatctttgcgggaaagatataactcactagatggg
tactactcaatggcttgtcagccaccaaatgagccaaggacaactgtgcctttaccaagg
gaaccttgtggtcatttgaagaccagttgcgaggagcagatacgaagaaaaccagagcag
tgggcacagtatcacactcagaaagcatctcttgtctcttcaactcttcctgttgccaca
cagtcaccaacaccaccttctcctctattcagtgtagactttcgcgctgatttctctgat
agtgtgagtggcacaaaatttgaagaagatcgtctttcccactattctccttggtcttgt
ggcaccataggctcctgtataaatgccatcgactcagagcccagagatgtaattgctaat
tcgaatgccgtgttaatggacctggacagtggagatgttaagagaagactgcatttgttt
gaaactcagagaaggactaaagaagaagacccaataattccttttagcgatgggcctatc
atctcaaaatggggtgcaatttcccgatcttcccgtacagggtatcatactacagatcct
gtccaagccactgcttcccaaggaagtgcaactaagccaatcagtgtatcagattatgtc
ccttatgtcaatgctgtcgattcaagatggagttcttatggtaatgaggccacatcttca
gcacactatatcgaacgggacaggttcattgttactgatttatctgctcatagaaagcat
tccagtactggagaccttttgagcattgaacttcagcaggccaaaagtaactcattactt
cttcagagggaagccaatgctttggccatgcaacagaagtggaattccctggatgaaggc
cgtcaccttaccttaaatcttctaagcaaggaaattgaactaagaaatggagagagtgat
tatgtagaagatataactgatactaagcctgatagggatattgagttagagctgtcagca
cttgataccgatgaacctgatggacaaggtgaacacattgaagagattttagacatacaa
cttgggatcggttctcaaagcgatcagctgatgaatggaacagcagtggaaaatgggcat
actgtccagcagcaccaaaaggagtcccaggaacagaagagacagagcttaggtgaagaa
catgtgattctggaggagcaaaaagcagttatgccagtaactacttgctttagccagcct
ctcccagtgtccattagcaatgcaagttgcctccccatcaccgcatctgtcagtgtgggc
aacctcattttgaaaactcatgttatgtctgaagataaaaaggactttttaaaacctgtt
gcaaatgggaagatggtaaacagctga
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