Suncus etruscus (white-toothed pygmy shrew): 126011057
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Entry
126011057 CDS
T09902
Symbol
PABPC4
Name
(RefSeq) polyadenylate-binding protein 4 isoform X1
KO
K13126
polyadenylate-binding protein
Organism
setr
Suncus etruscus (white-toothed pygmy shrew)
Pathway
setr03015
mRNA surveillance pathway
setr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
setr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
126011057 (PABPC4)
09123 Folding, sorting and degradation
03018 RNA degradation
126011057 (PABPC4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
setr03019
]
126011057 (PABPC4)
03041 Spliceosome [BR:
setr03041
]
126011057 (PABPC4)
Messenger RNA biogenesis [BR:
setr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
126011057 (PABPC4)
mRNA cycle factors
Stress granule specific factors
126011057 (PABPC4)
Spliceosome [BR:
setr03041
]
Complex C
Other components
Complex C specific factors
126011057 (PABPC4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_5
RRM_7
RRM_occluded
RRM_10
RBD_RDR6
RRM_3
POP1_C
ApbA_C
Motif
Other DBs
NCBI-GeneID:
126011057
NCBI-ProteinID:
XP_049630687
LinkDB
All DBs
Position
6:38072889..38088771
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AA seq
660 aa
AA seq
DB search
MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEK
HEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKN
LDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS
KPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGGYFVPAVPQAQGRP
PYYTPNQLAQMRPNPRWQQGGRPQGFQGMPSAIRQSGPRPTLRHLAPTGNAPASRGLPTT
AQRVGSECPDRLAMDFGGAGAAQQGLTDSCQSGGVPTAVQNLAPRAAVAATAPRAVTPYK
YASSVRSPHPALQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHS
NLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHHAKKEAAQKVGTVAAATS
NT seq
1983 nt
NT seq
+upstream
nt +downstream
nt
atgaacgctgcagccagcagctaccccatggcctccctgtacgtgggtgacctgcattcg
gacgtcacggaggccatgctgtacgaaaagttcagtcctgccgggcctgtgctgtctatc
cgggtctgccgcgacatgatcacccgccgctccctgggctatgcctacgtcaacttccag
cagcctgctgacgctgaacgggccttggataccatgaacttcgatgtgattaaagggaag
ccaattcgtatcatgtggtctcagagggatccctctttgaggaagtccggcgtgggaaat
gtcttcattaagaacctggacaaatctatagataacaaggcactttatgatactttctct
gcttttggaaacattctgtcctgcaaggtggtgtgcgatgagaacggctctaagggttat
gcctttgtccacttcgagacccaagaggctgccgacaaggctatcgagaagatgaatggc
atgctcctcaatgaccgcaaagtgtttgtaggcagatttaaatctcgaaaagagcgtgaa
gcagagcttggtgccaaggccaaggaattcaccaacgtttatatcaagaactttggggaa
gaggtggatgatgaaagtctgaaagagctattcagccagtttggtaagaccctaagtgtc
aaggtgatgagagatcccagtgggaaatccaaaggctttggctttgtgagttacgaaaaa
cacgaggatgccaataaggcggtggaagagatgaacggaaaagaaatcagtggcaaagtc
atatttgtaggccgtgcacaaaagaaagttgaacggcaggctgagttaaaaagaaaattt
gaacagctgaaacaagagagaattagtcgataccagggggtcaatctatatattaagaac
ttggatgacaccatcgatgatgaaaagctaaggaaagaattttctccttttggatccatc
accagtgcaaaggtaatgctggaggatgggagaagcaaaggatttggctttgtctgcttc
tcctctcctgaagaggcaaccaaagcagtcactgagatgaatggccgtatcgtgggctct
aagcccctgtatgttgcgctggcccagaggaaggaggagcgaaaggctcacctgaccaac
cagtacatgcagcgagtggccggcatgagagcactccctgccaatgccatcttaaaccag
ttccagcctgcagctgggggctactttgtgccagctgttccacaggctcagggaagacct
ccgtattacacacctaaccagctggcacagatgaggcctaatccacgctggcagcaaggt
gggagacctcaaggcttccaaggcatgccaagtgctatacgccagtctgggcctcgtcca
actcttcgccacctggctccaactggtaatgctccggcctctcgtggcctccctactacc
gctcagagagtcgggtctgagtgcccggaccgcttggctatggactttggtggggctggt
gccgcccagcaagggctgactgacagctgccagtctggaggcgtccccacagctgtgcag
aacttagcccctcgtgctgctgtagctgctactgcccctcgagctgtaacaccatacaaa
tatgcctccagcgtccgcagcccccaccctgccttgcagcctttgcaggcgccccagccc
gcggtgcacgtgcaaggccaggagcccctcacagcctccatgttggcagcagcgcctccc
caggagcagaagcagatgctgggagaacgtctgttcccgctcatccagacgatgcactca
aacctggcgggcaaaatcacaggcatgctgctggagatcgacaactcggagctgctgcac
atgctggagtcgcccgagtctctccggtccaaggtggatgaagctgtggccgttctacag
gcccatcatgccaagaaagaagctgcccagaaggtgggcactgtggctgctgctacctcc
tag
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