KEGG   Suncus etruscus (white-toothed pygmy shrew): 126011107
Entry
126011107         CDS       T09902                                 
Symbol
HDAC1
Name
(RefSeq) histone deacetylase 1 isoform X1
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
setr  Suncus etruscus (white-toothed pygmy shrew)
Pathway
setr03082  ATP-dependent chromatin remodeling
setr03083  Polycomb repressive complex
setr04110  Cell cycle
setr04213  Longevity regulating pathway - multiple species
setr04330  Notch signaling pathway
setr04350  TGF-beta signaling pathway
setr04613  Neutrophil extracellular trap formation
setr04919  Thyroid hormone signaling pathway
setr05016  Huntington disease
setr05031  Amphetamine addiction
setr05034  Alcoholism
setr05165  Human papillomavirus infection
setr05169  Epstein-Barr virus infection
setr05200  Pathways in cancer
setr05202  Transcriptional misregulation in cancer
setr05203  Viral carcinogenesis
setr05206  MicroRNAs in cancer
setr05220  Chronic myeloid leukemia
Brite
KEGG Orthology (KO) [BR:setr00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    126011107 (HDAC1)
   03083 Polycomb repressive complex
    126011107 (HDAC1)
 09130 Environmental Information Processing
  09132 Signal transduction
   04330 Notch signaling pathway
    126011107 (HDAC1)
   04350 TGF-beta signaling pathway
    126011107 (HDAC1)
 09140 Cellular Processes
  09143 Cell growth and death
   04110 Cell cycle
    126011107 (HDAC1)
 09150 Organismal Systems
  09151 Immune system
   04613 Neutrophil extracellular trap formation
    126011107 (HDAC1)
  09152 Endocrine system
   04919 Thyroid hormone signaling pathway
    126011107 (HDAC1)
  09149 Aging
   04213 Longevity regulating pathway - multiple species
    126011107 (HDAC1)
 09160 Human Diseases
  09161 Cancer: overview
   05200 Pathways in cancer
    126011107 (HDAC1)
   05202 Transcriptional misregulation in cancer
    126011107 (HDAC1)
   05206 MicroRNAs in cancer
    126011107 (HDAC1)
   05203 Viral carcinogenesis
    126011107 (HDAC1)
  09162 Cancer: specific types
   05220 Chronic myeloid leukemia
    126011107 (HDAC1)
  09172 Infectious disease: viral
   05169 Epstein-Barr virus infection
    126011107 (HDAC1)
   05165 Human papillomavirus infection
    126011107 (HDAC1)
  09164 Neurodegenerative disease
   05016 Huntington disease
    126011107 (HDAC1)
  09165 Substance dependence
   05031 Amphetamine addiction
    126011107 (HDAC1)
   05034 Alcoholism
    126011107 (HDAC1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:setr03036]
    126011107 (HDAC1)
Enzymes [BR:setr01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     126011107 (HDAC1)
Chromosome and associated proteins [BR:setr03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     126011107 (HDAC1)
   HDAC complexes
    Sin3A-HDAC complex
     126011107 (HDAC1)
    BRAF-HDAC complex
     126011107 (HDAC1)
    REST complex
     126011107 (HDAC1)
    SHIP complex
     126011107 (HDAC1)
    MiDAC complex
     126011107 (HDAC1)
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     126011107 (HDAC1)
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    126011107 (HDAC1)
  Chromatin remodeling factors
   NuRD complex
    126011107 (HDAC1)
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 126011107
NCBI-ProteinID: XP_049630767
LinkDB
Position
6:complement(45148205..45188723)
AA seq 481 aa
MAQTLGTRRKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKAN
AEEMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVAS
AVKLNKQQTDIAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHHG
DGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNYPLRDGIDDESYEAI
FKPVMSKVMEMFQPSAVVLQCGSDSLSGDRLGCFNLTIKGHAKCVEFVKSFNLPMLMLGG
GGYTIRNVARCWTYETAVALDTEIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTNEYLE
KIKQRLFENLRMLPHAPGVQMQAIPEDAIPEESGDEEEDDPDKRISICSSDKRIACEEEF
SDSEEEGEGGRKNSSNFKKAKRVKTEDEKEKEPEEKKEVTEEEKTEEKQEVKGVKEEVKL
A
NT seq 1446 nt   +upstreamnt  +downstreamnt
atggcgcagacgctgggcactcggaggaaagtctgttactactacgacggggatgttgga
aattattattacggacaaggccacccaatgaagcctcatcgaatccgtatgactcacaac
ttgcttcttaattatggtctctacagaaaaatggaaatctatcgtcctcataaggcaaat
gctgaggagatgaccaagtatcacagtgatgactacattaaattcttgcgttccatccgc
ccagataacatgtctgagtacagcaagcagatgcagagatttaatgttggtgaggactgt
ccagtatttgacggcctgtttgaattctgtcagttatctactggtggctctgtggcaagt
gctgtgaaacttaataagcagcagacggacatcgctgtgaattgggccgggggcctgcac
catgcaaagaagtctgaggcatctggcttctgttacgtcaatgatatcgtcttggccatc
ctggagctgctaaagtatcaccagagagtgctgtatattgacattgatattcaccacggt
gatggtgtggaggaggccttctatactacagaccgggtcatgactgtgtcctttcataaa
tatggagaatacttcccgggaactggagacctacgggatattggggccggcaaaggcaag
tattatgctgttaactatccactccgtgatgggattgatgatgaatcctatgaggccatt
ttcaagccggtcatgtccaaagtaatggagatgttccagcccagtgcggtcgtcttacag
tgtggctccgactccctgtctggagatcgattaggttgcttcaatctgaccatcaaaggg
catgccaagtgtgtggaatttgtgaagagcttcaacctgcctatgctgatgctgggagga
ggtggctataccattcgcaacgttgcccgatgctggacatatgaaacagctgtggcctta
gatacggagatccctaatgagcttccatacaatgactattttgaatactttggaccagat
tttaaacttcacatcagtccttccaatatgactaaccagaatacaaatgagtacttggag
aagatcaaacagagactgtttgagaacctgagaatgctgccccatgcccctggggttcag
atgcaggcaattcctgaagatgccatcccagaggagagtggtgatgaggaggaagatgac
cctgacaaacgtatctctatctgttcttctgacaaacgaattgcctgtgaggaagagttc
tccgattcagaggaggagggagaaggtggccgcaagaactcttccaacttcaaaaaagcc
aagagagtcaaaacggaagatgagaaagaaaaagaaccagaggagaagaaagaagtcaca
gaagaggagaaaaccgaagagaaacaagaagtcaaaggggtcaaggaagaggtgaagttg
gcctga

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