KEGG   Suncus etruscus (white-toothed pygmy shrew): 126011182
Entry
126011182         CDS       T09902                                 
Symbol
SNRNP40
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
  KO
K12857  Prp8 binding protein
Organism
setr  Suncus etruscus (white-toothed pygmy shrew)
Pathway
setr03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:setr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    126011182 (SNRNP40)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:setr03041]
    126011182 (SNRNP40)
Spliceosome [BR:setr03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    126011182 (SNRNP40)
 Complex C
   U5 SnRNP specific factors
    126011182 (SNRNP40)
SSDB
Motif
Pfam: WD40_Prp19 WD40 WD40_WDHD1_1st Beta-prop_TEP1_2nd WD40_CDC20-Fz EIF3I Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 WDR55 WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C Beta-prop_WDR75_1st Beta-prop_EML NBCH_WD40 WDR90_beta-prop_4th Beta-prop_SCAP WD40_MABP1-WDR62_1st ANAPC4_WD40 Beta-prop_EIPR1 Beta-prop_SPT8 Beta-prop_IFT122_1st Beta-prop_RIG_2nd Beta-prop_DCAF4 WD40_RFWD3 Beta-prop_IFT140_1st Beta-prop_WDR75_2nd Beta-prop_WDR19_1st Beta-prop_Vps41 eIF2A Beta-prop_WDR35_TULP_N Beta-prop_HPS5 Beta-prop_NWD2_C Beta-prop_RIG_1st Cytochrom_D1 WD40_like WDR54 Beta-prop_Nup120_160
Other DBs
NCBI-GeneID: 126011182
NCBI-ProteinID: XP_049630870
LinkDB
Position
6:46202459..46240000
AA seq 361 aa
MIEQAKRKGPELPLVPVKRPRHELLLGAAGSGPGAGQQQQQQAAPGALLQAGPPRCSSLQ
APIMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELH
YNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTV
KLWDIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHAD
SVTGLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKVFQGNVHNFEKNLLRCSWSPD
GSKIAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEPIILSASSDKRLYMGEI
Q
NT seq 1086 nt   +upstreamnt  +downstreamnt
atgatagaacaggcgaagcgaaaaggcccagaattgccgctggttccagtcaagcggccg
cggcatgagttgctcttgggagcggcggggtccggccccggagcgggccagcagcagcaa
cagcaggcagcgccgggagctttgttgcaagctgggcctcctcggtgttcctctcttcaa
gctccaatcatgcttctctcaggacatgagggagaagtatattgctgcaaatttcatccc
aatggatccaccttagcatctgcaggatttgaccgactaatattgttatggaatgtctat
ggtgactgtgataactatgctacactgaagggacacagtggagcagtgatggaactgcat
tataacacagatggcagtatgctcttctcagcatccacagataaaactgtggcagtgtgg
gatagtgaaaccggtgaaagggttaaaagactaaagggacatacttcctttgtgaattcc
tgttacccggccagaaggggccctcagcttgtatgcactggcagtgacgatggaacagtt
aagctttgggacatccggaagaaagcagccatccagacatttcagaacacctatcaggta
ttagctgtgaccttcaatgacacaagtgatcagattatttctggtggaatagacaacgat
attaaggtttgggacttacgccaaaacaagctaacctacaccatgagaggccatgcagat
tctgtgactggcctgagtttaagttctgaaggctcttatctcttgtccaatgcaatggat
aatacagtgcgggtatgggatgtccggccatttgctccaaaagagaggtgcgtgaaggta
tttcaaggaaatgtgcacaactttgagaagaatcttctgcgatgctcttggtccccggat
gggagcaagatagcagctggctcagctgacaggttcgtgtatgtgtgggataccacaagc
agaaggattttgtataagttacctggccatgctggctctatcaatgaagtggctttccat
cccgatgaacccatcattctctcagcatcaagtgacaagaggctgtatatgggagagatt
cagtga

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