Suncus etruscus (white-toothed pygmy shrew): 126011502
Help
Entry
126011502 CDS
T09902
Symbol
CLSTN1
Name
(RefSeq) calsyntenin-1 isoform X1
KO
K22659
calsyntenin 1
Organism
setr
Suncus etruscus (white-toothed pygmy shrew)
Brite
KEGG Orthology (KO) [BR:
setr00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
setr04515
]
126011502 (CLSTN1)
Cell adhesion molecules [BR:
setr04515
]
Cadherins
Cadherin related
126011502 (CLSTN1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLSTN_C
Cadherin
Laminin_G_3
Laminin_G_2
CDC45
FAM176
Cadherin_pro
Cadherin_C_2
EphA2_TM
PFF1_TM
V_ATPase_I
Motif
Other DBs
NCBI-GeneID:
126011502
NCBI-ProteinID:
XP_049631240
LinkDB
All DBs
Position
6:complement(5143991..5977164)
Genome browser
AA seq
987 aa
AA seq
DB search
MLRPRPAPPASAALLLLLLAGLLLLRGGGVWAARVNKHKPWLEPTYHGIVTENDNAVLLD
PPLIALDKDAPLRYSESFEVTVTKEGEICGFKIHGQNVPFDAVVVDKSTGEGLIRSREKL
DCELQKDYSFTLQAYDCGQGPDGTGAKKSHKAAVHIQVNDVNEFGPVFKEKSYKATVVEG
RQYERILRVEALDADCSPQFSQICSYEIVTPDVPFAVDKDGYISNTEKLNHGKEQQYKLM
VTAYDCGKKRAAEDVLVKISVRPTCTPGWQGWNSRIEYEPGTGSLTLFPNLRLETCDGAV
AAVQATLELETGHIGKGCDRDTYSEKALHRLCGAVSGTTELLPAPSSAANWTAGLPTDNG
HDSDQVFEFNGTQAVRIPAGVVAVSPEEPFTLSVWMRHGPLGRRKETVLCSSDRTDMNRH
HYSLSVHGCRLIFLLRQEPSSEKKYRPAEFHWKLDQVCDEEWHHYVLNVELPSVTLFVDG
SPHEPFSVAEDRPLHPSKIETQLVVGACWQEDSGLESENDTESWPPGPPGADLRLTQFFR
GDLAGLTLRPGKLADKNVIDCLYTCKEGLDLQLPEDASRGVKVQLSHSHAVLTVETESVG
DLEKALQRAVYLNSRQFPTPGTRRLRLSSSAQCFNEAACVSIPPVEAAVMVLQPEEPKIS
LSGVHHFARAASEFESLEGVFLFPELHIISTITREVEPDSDGGEDPTVQESLVSEEIVHD
LDACTVTVQGEELNSEHESLEVDAAPLQQRGIDLSRSGLGVVFTGVDTMASYEQILRLLR
YRNWHTRALLDRKFKLVCSELNGRYVSNEFQVEVNVIHTAEPVDHASHMAAQPQFVHPEH
HAFIDLSGHNLASPHPFAVVPSTATVVIVVCVSFLVFMIILGVFRIRAAHQRTVRDQDGG
KESEMDWDDSALTITVNPMETYEDQHSSEEEEEEEEEESEEGEEEEDITSAESESSEEEE
GGGREQPRGDRGDRRQQLEWDDSTLSY
NT seq
2964 nt
NT seq
+upstream
nt +downstream
nt
atgctgcgccctcgccccgcgccccccgcttcggccgccctgctgctgctgctgctggcc
gggctgctgctgctgcgcggcggcggggtttgggccgcgcgagtgaacaagcacaagccg
tggctggagcccacctaccacggcatcgtcaccgagaacgacaatgcggtgctgctggac
cctccgctcattgccctggacaaggacgcgcccctgcgctactcggagagttttgaggtg
acagtcaccaaagaaggtgagatttgtgggtttaaaatccacgggcagaacgtccccttc
gacgctgtggtggtggacaagtccacgggagagggcctgatccgctcccgggagaagctg
gactgcgagctgcaaaaggactattccttcaccctccaggcctacgactgtggccagggc
cccgatggcacgggggccaagaagtcgcataaggccgctgtgcacatccaggtgaatgac
gtgaatgagttcgggcctgtgttcaaggaaaagtcgtacaaggccacagtggtggaaggc
cggcagtatgagcgcatcctgcgggtggaggccctggacgccgactgctcgccgcagttc
agccagatctgcagctacgagatcgtcacacccgacgtgcccttcgccgtggacaaggat
ggctacatcagtaacacggagaagctcaaccacgggaaggagcagcagtacaagctgatg
gtcacggcctacgactgcgggaagaaacgcgccgccgaggacgtgctggtcaagatcagt
gtccggcccacctgcacacccggctggcaaggatggaacagcaggatcgagtatgaaccc
ggcaccggctccctgaccctctttcccaacctccgcctggagacgtgcgacggggccgtg
gcagctgtgcaggccacactggagctggagacaggccacatcggcaagggctgtgaccgg
gacacctactcggagaaggccctgcaccgcctctgcggtgctgtctccggcaccaccgag
ctgctgcctgcgcccagcagtgccgccaactggacggctggcctccccactgacaatggc
cacgacagcgaccaagtgttcgagttcaacggcacgcaggccgtgcgcatcccggctggc
gtggtggctgtgtcccctgaggagcccttcactctgtctgtgtggatgcggcacgggccg
ctgggccgcaggaaggagacggttctctgtagctccgaccgcacggacatgaaccggcac
cattactcgttgtctgttcacggctgccgcctcatcttcctcctgcgccaggagccatcg
tcggagaagaagtacaggcccgcggaattccactggaagcttgaccaggtgtgtgacgag
gagtggcaccactacgtcctcaacgtggagctccccagcgtcactctcttcgtggacggg
tcgccccatgagcccttctccgtggccgaagatcgtccgctgcacccgtccaagatcgag
acgcagctggtggttggggcttgctggcaagaggactcgggccttgagagcgagaatgac
acggagtcctggcctccgggccccccaggcgccgacctgcgcctgacgcagttcttccga
ggggacctggcgggcctgacgctgcggccggggaagctggctgacaagaatgtcatcgac
tgtctgtacacctgcaaggaggggctggacctgcagctccccgaggatgccagccgaggg
gtgaaggttcagctcagccacagccacgcggtgctgacagtggaaaccgaatctgtcggg
gacctggagaaggccctgcagcgcgccgtctacctcaactcccgccagttccccacgccc
ggcacccgcaggctgcgcctctccagcagcgcccagtgcttcaatgaggcggcctgcgtg
tccatccccccggtggaagccgccgtgatggtgctgcagcccgaggagcccaagatcagc
ctcagcggcgtccaccacttcgcacgagcagcctcagagtttgagagcttggagggcgtc
ttcctcttccctgagctgcacatcatcagcaccattacgagggaggtggagcctgacagt
gacggtggtgaggaccccacagtgcaagagtcgctggtgtccgaggagatcgtgcatgac
ctggacgcctgcacggtgacggtgcagggggaggagctgaactccgagcatgaaagtctg
gaggtggatgcggcccccctgcagcagcggggcattgatttgagccgctctggcctgggt
gtcgtctttacgggcgtggacaccatggccagctacgagcagattctgcggctgctccgc
taccggaactggcacacccgggccttgctcgaccgcaagttcaagctcgtctgttcagag
ctcaacgggcgctatgtcagcaacgagtttcaggtggaggtgaatgtcatccacacggct
gagcccgtggaccatgccagccatatggctgcacagccacagttcgtccaccccgagcac
cacgccttcatcgacctctcgggccacaacctggccagcccacaccccttcgcagtggtc
cccagcacggccaccgtggtcatcgtggtgtgcgtcagcttcctggtcttcatgatcatc
ctgggcgtgttccgtatccgggcggcacaccagcgcaccgtgagggaccaggacgggggc
aaggagagcgagatggactgggacgactcagccctgaccatcaccgtgaaccccatggag
acctacgaggaccagcacagcagtgaggaggaagaggaggaagaggaggaggagagcgag
gagggggaagaggaggaggacatcaccagcgccgagtctgagagcagtgaggaagaggaa
ggcggaggccgagagcagccgcgtggggaccgcggggaccggcggcagcagctggagtgg
gacgactccaccctcagctactga
DBGET
integrated database retrieval system
