Suncus etruscus (white-toothed pygmy shrew): 126013194
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Entry
126013194 CDS
T09902
Symbol
PBRM1
Name
(RefSeq) protein polybromo-1
KO
K11757
protein polybromo-1
Organism
setr
Suncus etruscus (white-toothed pygmy shrew)
Pathway
setr03082
ATP-dependent chromatin remodeling
setr05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
setr00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
126013194 (PBRM1)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
126013194 (PBRM1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
setr03021
]
126013194 (PBRM1)
03036 Chromosome and associated proteins [BR:
setr03036
]
126013194 (PBRM1)
Transcription machinery [BR:
setr03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
126013194 (PBRM1)
Chromosome and associated proteins [BR:
setr03036
]
Eukaryotic type
Chromatin remodeling factors
PBAF complex
126013194 (PBRM1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bromodomain
BAH
HMG_box
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
126013194
NCBI-ProteinID:
XP_049632110
LinkDB
All DBs
Position
7:complement(125326183..125427819)
Genome browser
AA seq
1708 aa
AA seq
DB search
MRRLAFRGAGCALVKLKKLDSMGSKRRRATSPSSSVSGDFDDGHHSVSTPGPSRKRRRLA
NLPTVDPIAVCHELYNTIRDYKDDQGRLLCELFIRAPKRRNQPDYYEVVSQPIDLMKIQQ
KLKMEEYDDVNLLTADFQLLFNNAKAYYKPDSPEYKAACKLWDLYLRTRNEFVQKGEADD
EDEDEDGQDNQGTEGSSPSYLKEILEQLLEAIVVATNPSGHLISELFQKLPSKVQYPDYY
AIIKEPIDLKTIAQRIQNGSYKSIHAMAKDIDLLAKNAKTYNEPGSQVFKDANSIKKIFY
MKKAEIEHHEMTKSSLRIRTSSNLAASRLTGASQSKSGLSDERNPASKYYRNKRAVQGGR
LSAITMALQYGSESEEDATLAAARYEEGESEAESITSFMDVSNPFYQLYDTVRSCRNNQG
QLIAEPFFHLPSKKKYPDYYQQIKVPISLQQIRTKLKNQEYETLDHLECDLNLMFENAKR
YNVPNSAIYKRVLKLQQVMQAKKKELARRDDIEDGDSMISSATSDTGSAKRKSKKNIRKQ
RMKILFNVVLEAREPGSGRRLCDLFMVKPSKKDYPDYYKIILEPMDLKIIEHNIRNDKYA
GEEGMIEDMKLMFRNARHYNEEGSQVYNDAHILEKLLKDKRKELGPLPDDDDMASPKLKL
SRKSGISPKKSKYMTPMQQKLNEVYEAVKNYTDKRGRRLSAIFLRLPSRSELPDYYLTIK
KPMDMEKIRSHMMANKYQDIDSMVEDFVMMFNNACTYNEPESLIYKDALVLHKVLLETRR
DLEGDEDSHVPNVTLLIQELIHNLFVSVMSHQDDEGRCYSDSLAEIPAVDPNFPNKPPLT
FDIIRKNVENNRYRRLDLFQEHMFEVLERARRMNRTDSEIYEDAVELQQFFIKIRDELCK
NGEILLSPALSYTTKHLHNDVEKEKKEKLPKEIEEDKLKREEEKREAEKSEESSGASGLS
GLHRTYSQDCSFKNSMYHVGDYVYVEPAETNLQPHIVCIERLWEDSAGEKWLYGCWFYRP
NETFHLATRKFLEKEVFKSDYYNKVPVSKILGKCVVMFVKEYFKLCPENFRDEDVFVCES
RYSAKTKSFKKIKLWTMPISSVRFVPRDVPLPVVRVASVFANADKVEDDKNTDNSEENRN
EDSYNLEKEKEDVPVEMSNGEPGCHYFEQLRYNDMWLKVGDCVFIKSHGLVRPRVGRIEK
VWVRDGAAYFYGPIFIHPEETEHEPTKMFYKKEVFLSNLEETCPMTCILGKCAVLSFKDF
LSCRPTEIPENDILLCESRYNESDKQMKKFKGLKRFSLSAKVVDDEIYYFRKPIVPQKEP
SPLLEKKIQLLEAKFAELEGGDDDLEEMGEEDSEVIEPPSLPQLQTPLSSELDLMPYTPP
QSTPKSAKGSAKKESSKRKINMSGYILFSSEMRAVIKAQHPDYSFGELSRLVGTEWRNLE
TAKKAEYEERAAKVAEQQERERAAQQQQPSASPRAGTPVGALMGVVPPPTPMGMLNQQLT
PVAGMMGGYPPGLPPLQGPVDGLVSMGSMQPLHPGGLPPHHLPPGVPGFSGIPPPGVMNQ
GVAPLVGTPAPGGSPYGQQVGVLGPPGQQAPPPYPGPHPAGPPVIQQPSTPMFVAPPPKT
QRLLHSEAYLKYIEGLTAESNSISKWDQTLAARRRDIHLSKEQESRLPSHWLKSKGAHTT
MADALWRLRDLMLRDTLNIRQAYNLENL
NT seq
5127 nt
NT seq
+upstream
nt +downstream
nt
atgaggagactggcttttcgaggcgctggttgtgctctggtaaagctgaagaaattggat
tccatgggttccaagagaagaagagccacctccccttccagcagtgtcagcggggacttc
gacgatgggcaccattctgtgtccacaccaggcccaagcaggaaaaggcggcgactcgcc
aaccttccaactgtggatcccattgctgtgtgtcatgaactctacaacactattcgagac
tataaggacgaccagggcaggctcctctgtgagctcttcattagggcaccaaagcgaaga
aatcaaccagattattatgaagtagtttctcagccaattgacttgatgaaaatccaacag
aaattaaaaatggaagaatacgatgatgttaacttgctcactgctgacttccagctgctt
tttaacaatgcaaaggcttattataagccagattctcctgaatataaagctgcttgcaaa
ctctgggatttgtaccttcgaaccagaaatgagtttgttcagaaaggagaagcagatgat
gaagacgaagatgaagacgggcaagacaatcaaggcacagaaggatcctctccaagttac
ttgaaggagatcctggagcagctgcttgaagccatagttgtagccacaaatccatcaggg
catctgattagtgaactttttcagaaactgccttcgaaagtgcaatatccagactattat
gcaataattaaggagcctatagatcttaagaccattgcacagagaatacagaatggaagt
tacaagagtattcatgcaatggccaaagacatagatctcctagcaaaaaatgccaaaact
tataacgagcctggttctcaagtattcaaggatgcaaattcaattaaaaaaatattttat
atgaaaaaggcagaaatcgaacaccatgaaatgactaagtccagccttcgaataaggact
tcgtcaaacttggctgcatctaggctgacaggtgcttctcagagtaaaagtggcctgagt
gatgagagaaatcctgctagcaaatattaccgtaataagagagcagtacaaggaggtcgt
ttgtcagcaattactatggcacttcagtacggctcagaaagtgaagaggatgcaacttta
gcagctgcacgttatgaggagggagagtcagaagcagagagcattacttcatttatggat
gtttcaaatcctttttaccagctttatgacacagttaggagctgtcggaacaaccaagga
cagttaatcgctgagccttttttccacttaccttccaagaaaaaataccccgactattat
cagcaaattaaagtgcccatatcactgcagcaaatcagaacaaagctaaaaaaccaagaa
tatgaaactttagatcatttggagtgtgacctgaatttaatgtttgaaaatgccaaacgc
tataatgttccaaattcagccatctacaaacgagtactaaaattgcagcaagtcatgcag
gcaaagaagaaggagcttgccagaagagatgacatcgaggatggagacagcatgatttct
tcagccacctctgatactggtagtgccaaaagaaaaagtaaaaagaacatcagaaagcag
cgaatgaaaattttattcaatgttgttcttgaagctcgagagccaggctcgggcagaaga
ctttgtgatctctttatggtcaagccatccaaaaaggactatcctgattattacaaaatc
atcttggagccaatggacctgaagataattgagcataacattcgaaacgacaagtacgca
ggggaagagggcatgatagaagacatgaagctgatgtttcgaaatgcgaggcactacaat
gaagagggctcacaggtatacaatgatgcacacatcttggagaagttgctcaaggataag
aggaaagaactgggcccactgcctgatgatgatgacatggcttctcccaagctcaagctg
agtaggaagagtggcatttctcctaaaaaatcaaaatacatgactccaatgcagcaaaaa
ctaaatgaagtctacgaagctgtaaagaactatacggataaaaggggccgccgcctcagt
gctatatttctgcgacttccatccagatccgagttgccagactactatttgactattaaa
aagcccatggacatggaaaaaattcggagtcatatgatggccaacaagtaccaagatatc
gactctatggttgaggacttcgtcatgatgttcaacaatgcctgcacatacaatgaaccc
gagtctttgatctacaaagatgccctcgtcctgcacaaagtcctcctggaaactcggaga
gacctcgagggagacgaggactctcatgtccccaatgtgaccttgctgattcaagagctt
atccacaacctctttgtgtcggtcatgagtcatcaggatgatgagggcaggtgctacagc
gattctttagcagaaattcctgctgtggaccccaacttcccaaataaacctcctctcact
tttgacataattcggaagaacgtggaaaataatcgctaccgacggcttgacttatttcaa
gagcatatgtttgaagtattggaaagagcgaggaggatgaatcggacagattctgaaata
tatgaagatgcagtagagcttcagcagttttttattaaaatccgtgatgaactctgcaaa
aatggagagatccttctttcaccagccctcagctataccacgaagcacttacacaatgat
gtagaaaaagagaaaaaggaaaaattaccgaaagaaatcgaggaggataaactaaaacga
gaagaagaaaaaagagaagctgaaaagagtgaagagtcctctggtgcctcaggcctctcc
ggccttcatcggacatatagccaggactgcagtttcaagaacagtatgtaccatgttggt
gattatgtctatgtggagcccgcagaaaccaatctacaaccacatattgtctgtatagag
agactttgggaagattcagctggtgaaaaatggttgtatggctgttggttttatcggcca
aatgaaacattccatctggctacacgaaaatttctagaaaaggaagtttttaagagtgac
tattacaataaagttcctgttagtaaaattctaggcaaatgtgtagttatgtttgtcaag
gaatactttaaattatgcccggaaaattttcgtgatgaggatgtttttgtctgtgagtcc
cgatactctgccaaaaccaaatctttcaaaaaaattaaactgtggaccatgccgatcagt
tcagttcggtttgtccctcgggatgtccctctgcctgtggttcgagtggcctctgtattt
gcgaatgcagataaagtcgaagatgacaaaaacacagacaactcagaagagaatcgcaat
gaagacagttataacttagaaaaggagaaagaagatgtccctgtggaaatgtccaacggt
gaaccaggttgccactattttgagcagcttcgttacaatgacatgtggctaaaggttgga
gactgtgtcttcattaagtcccacggcctggtgcgcccccgtgtaggcagaatcgagaag
gtatgggtccgagatggagctgcatatttttatggccccatcttcattcatccagaagaa
acagaacatgaacccacaaaaatgttctacaaaaaagaagtatttttgagtaacttggaa
gaaacctgccctatgacgtgtattctgggaaaatgtgctgtattgtctttcaaggacttc
ctttcctgcaggccaactgaaataccagaaaatgacattctgctttgcgagagccgctac
aatgagagtgataaacagatgaaaaaattcaagggacttaaaagattttcactgtctgct
aaagtagtagatgatgaaatttattatttcagaaaaccaattgttcctcagaaggagccg
tcacctttgctggaaaagaagattcaattgctcgaagctaaatttgccgagttagaaggt
ggagatgatgatctggaagagatgggagaggaagacagcgaggtcatcgagcctccttct
ctaccccagcttcagacgcccctgtccagtgagctggatcttatgccctacacgccccca
cagtccaccccaaagtctgcaaaaggcagtgcaaagaaagaaagctccaagcggaaaatc
aacatgagtggctatatcctgttcagcagcgagatgagagctgtgattaaggcccagcac
ccggactactcttttggtgagctcagccgactggtggggacagaatggagaaatcttgag
acagccaagaaagcagaatatgaagagcgggcagctaaagttgctgagcagcaggagaga
gagcgagcagcacagcaacagcagccgagtgcttctccccgagcaggcacccctgtgggg
gctctcatgggggtggtgccaccaccaacaccaatggggatgctcaatcagcagttgaca
cctgttgcaggcatgatgggtggctatccgccaggccttccacctttgcagggcccagtt
gatggccttgttagcatgggcagcatgcagccactacaccctggggggcttccaccccac
catcttccaccaggtgtgcccggcttctcgggcatcccacctccgggtgtgatgaaccaa
ggagtggccccattggtagggactccagcacctggtggaagtccatatggacagcaggtg
ggagttttggggcctccagggcagcaggcaccacctccatatcctggcccacatccagcc
ggcccccctgtcatacagcagccatcaacacccatgtttgtggctccaccaccaaagacc
cagcggcttctccactcagaggcctacctgaaatacattgaaggactcactgctgagtcc
aacagcattagcaagtgggaccagaccctcgcagctcgaagacgtgatattcacttgtca
aaagaacaggagagccgcctcccttcccactggctcaaaagcaaaggggcccacacgacc
atggcagatgccctctggcgccttcgggatttgatgctccgagacaccctcaacattcgc
caagcatacaacctagagaacctttaa
DBGET
integrated database retrieval system
