Suncus etruscus (white-toothed pygmy shrew): 126013345
Help
Entry
126013345 CDS
T09902
Symbol
ABCB1
Name
(RefSeq) LOW QUALITY PROTEIN: ATP-dependent translocase ABCB1
KO
K05658
ATP-binding cassette, subfamily B (MDR/TAP), member 1 [EC:
7.6.2.2
]
Organism
setr
Suncus etruscus (white-toothed pygmy shrew)
Pathway
setr02010
ABC transporters
setr04976
Bile secretion
setr05206
MicroRNAs in cancer
setr05226
Gastric cancer
Brite
KEGG Orthology (KO) [BR:
setr00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
126013345 (ABCB1)
09150 Organismal Systems
09154 Digestive system
04976 Bile secretion
126013345 (ABCB1)
09160 Human Diseases
09161 Cancer: overview
05206 MicroRNAs in cancer
126013345 (ABCB1)
09162 Cancer: specific types
05226 Gastric cancer
126013345 (ABCB1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
setr02000
]
126013345 (ABCB1)
04147 Exosome [BR:
setr04147
]
126013345 (ABCB1)
04090 CD molecules [BR:
setr04090
]
126013345 (ABCB1)
Enzymes [BR:
setr01000
]
7. Translocases
7.6 Catalysing the translocation of other compounds
7.6.2 Linked to the hydrolysis of a nucleoside triphosphate
7.6.2.2 ABC-type xenobiotic transporter
126013345 (ABCB1)
Transporters [BR:
setr02000
]
ABC transporters, eukaryotic type
ABCB (MDR/TAP) subfamily
ABCB1, 4, 5 subgroups
126013345 (ABCB1)
Exosome [BR:
setr04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
126013345 (ABCB1)
CD molecules [BR:
setr04090
]
Proteins
126013345 (ABCB1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_membrane
ABC_tran
SMC_N
ABC_ATPase
AAA_16
AAA_22
Zeta_toxin
RsgA_GTPase
Rad17
AAA_5
AAA
AAA_29
G-alpha
AAA_14
AAA_7
AAA_30
nSTAND1
AAA_15
PRK
NTPase_1
DUF815
DUF2207_C
Motif
Other DBs
NCBI-GeneID:
126013345
NCBI-ProteinID:
XP_049632387
LinkDB
All DBs
Position
1:101702204..101801325
Genome browser
AA seq
1251 aa
AA seq
DB search
MMLGTLAAIIHGAALPLMMLIFGEMTDSFADAGNYPNITLNGTEGYPNSSIDARNELEKK
MTTYAYYYSAIGAGVLVAAYIQVSFWCLAAGKQIFKIRKQFFHAIMRQEIGWFDMHDVGE
LNTRLTDDVSKINEGIGDKIGIFFQSIATFFTGFIVGFTRGWKLTLVILAVSPVLGFSAA
LWAKVLSSFTDKELLAYAKAGAVAEEVLAAIRTVIAFGGQKKELDRYNKNLEEAKKLGIK
KAVTANISMGAAFLLIYASYALAFWYGTSLVLSDEYTIGQVLTVFFSVLIGAFSIGQASP
SIEAFANARGAAYEIFNIIDNKPSIDSFSKNGYKPDNIKGNLEFKNVHFNYPSRKEVQIL
KGLNLKVQSGQTVALVGNSGCGKSTTVQLIQRLYDPVEGMVTIDGQDIRTINVRYLREII
GVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFILKLPNKFDTLVGERGAQ
LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLS
TVRNADVIAGFENGVIVEKGNHEELMKVEGIYFKLVTMQSQGNEIELEPSVEEPYETLLN
YSKDEGSSLIRRKSARGSIREPQAQDRKLSIKEAEVKFECYMQHYIGSSSLNNFVLFVPN
ENVPPVSFWRILKLNQTEWPYFVVGVICAIINGGLQPAFSVIFSKIIGVFTRPEDPDIKR
QNSNMFSLLFLVLGIISFITFFLQGYTFGKAGEILTKRLRFLVFRSMLRQDMSWFDDPKN
TTGALTTRLANDAAQVKGAIGARLAVITQNIANLGTGIIISLIYGWQLTLLLLAIVPIIA
VAGVIEMKMLSGQALKDKKELEGAGKIATEAIENFRTVVSLTREEKFEHTYAQNLQVPYR
NSLRKAHIFGLTFAFTQAMMYFSYAGCFRFGAYLVAREMMTFENVLLVFSAIVFGAMAVG
QVSSFAPDYAKAKISASHIIMIIEKVPLIDSYSTGGLQPKTLEGNVTFNEVVFNYPTRPD
IPVLQGLNLQVKKGQTLALVGSSGCGKSTVVQLLERFYDPLSGKVLIDGEEIKNLNVQWL
RAHLGIVSQEPILFDCSIAENIAYGDNSRIVSQEEIEQAAKEANIHPFIETLPNKYNTRV
GDKGTQLSGGQKQRIAIARALVRHPHILLLDEATSALDTESEKIVQEALDKAREGRTCIV
IAHRLSTIQNADLIVVFQNGRIKEHGTHQQLLAQKGIYYSMVSVQAGAKRL
NT seq
3756 nt
NT seq
+upstream
nt +downstream
nt
atgatgctgggaacattagctgccatcattcacggagctgcactccccctaatgatgctg
atttttggagaaatgacggatagttttgcagatgcaggaaactatccaaatataacttta
aatggtactgaaggttatcccaacagcagtatagatgcccgcaacgagctggaaaagaag
atgacaacatatgcctattattacagtgcaattggtgctggtgtgcttgttgccgcctac
atccaggtttcattctggtgcttggcagctggaaaacaaatattcaaaatcagaaaacaa
ttttttcatgctataatgcgacaggagataggctggtttgacatgcatgatgttggagaa
ctgaacacacgactgacagatgatgtctccaaaattaatgaaggaattggtgacaaaatt
ggaatattcttccagtcaatagcaacatttttcactggctttatagtaggatttacacgt
ggttggaagctaacccttgtaattttggctgtcagccctgtacttggattctcagctgcg
ctctgggcaaaggtactttcttcatttactgataaagaactcttggcatatgcgaaagct
ggagcagtagctgaagaagtcttggcagcaattagaactgtgattgcatttggaggacaa
aagaaagaacttgacagatacaacaaaaatttggaagaagctaaaaaacttggaataaag
aaagctgtaacagccaacatttcgatgggagccgctttcctattgatttatgcatcatat
gctctggcattttggtatggaacctccttggttctctcagatgaatatactattggacaa
gtgctaactgtcttcttttctgtattaattggggcatttagtattggacaagcgtcccca
agcattgaagcctttgcaaatgcaagaggagcagcttatgaaatcttcaatataattgat
aataaaccaagcattgacagcttctcaaaaaatggatacaagccagataatattaaagga
aatttggaattcaaaaatgttcatttcaattacccatctcgaaaagaagtccagatcttg
aaaggcctcaacctgaaggtccagagtgggcagacagtagccctggttggaaacagtggc
tgtggaaaaagcacaacagtacaactcatacagagactctacgaccctgtggaaggcatg
gtcactattgatggacaggacattagaacaataaatgtaaggtatctgcgggaaattatt
ggcgtggtgagtcaggaacctgtgttgtttgccaccacaatagctgaaaacattcgctat
ggccgtgaagatgtcaccatggatgagattgagaaagctgtgaaagaagccaatgcctat
gactttatcttgaaactgcccaataaatttgacaccctggttggagagcgaggggcccag
ttgagtgggggacagaaacagagaattgctattgctcgtgctctggttcgaaaccccaag
attcttctgctagatgaagccacatcagccttggacacggaaagtgaagcagttgttcag
gcagccctggataaggctcgagaaggcaggaccactattgtgatagctcatcgtttgtct
acagttcgtaatgcggatgtgattgctgggtttgaaaatggagtcattgtggagaaagga
aatcatgaggaactcatgaaagtggaaggcatttatttcaaacttgtcacaatgcagtca
cagggaaatgaaattgaattagaaccttcagttgaggaaccctatgaaaccttgctaaat
tattcaaaagatgagggatcaagtctaataagaagaaaatcagctagaggtagtatccgt
gaaccacaagcccaagacagaaaacttagtataaaagaggctgaggtgaaatttgaatgt
tacatgcaacattatattggatcttcaagtctaaacaattttgttctctttgttccaaat
gaaaatgtacctccggtttccttttggaggatcctgaaactaaatcaaacagaatggcct
tattttgtggttggtgtaatctgtgccatcataaatggaggcttgcagccagccttttca
gtaattttttcaaaaattataggagtttttacgaggcctgaggatcctgatataaaaaga
caaaatagtaatatgttttcactattgtttctagtgcttggaattatttcttttattaca
tttttccttcagggctacacttttggcaaagctggagagattctcaccaagcggctccga
ttcctggtttttagatctatgctacgacaggatatgagctggtttgatgaccctaaaaat
accactggagcactaactaccaggcttgccaatgatgctgctcaagtgaaaggggctata
ggtgcccggcttgctgtaattactcagaatatagcaaatcttggaacaggcattataata
tccttaatttatggctggcagttaacacttttactcttagcaattgtgccaatcattgca
gtagctggagttattgaaatgaaaatgttgtctggacaagcactcaaagataagaaagaa
ctcgaaggtgctgggaagattgctactgaagcaatagaaaatttcagaactgttgtttct
ctgactcgggaggaaaagtttgagcatacatatgcacagaatttgcaggtaccatacaga
aactctttgagaaaagcacacatctttggactcacatttgctttcactcaggcaatgatg
tacttttcctatgctggctgtttccgttttggtgcctacttggtggcaagggaaatgatg
acctttgaaaatgttctgttggtattctctgctattgtctttggtgccatggctgtgggg
caggtcagttcatttgctcctgactatgctaaagccaaaatatcagcatctcatatcatc
atgatcattgaaaaagtccctttgattgacagctatagtaccggaggcctccaaccgaaa
acattggaaggaaatgtgacattcaatgaagttgtattcaactatcccactcgaccagac
atccctgtgctacagggacttaacctccaggtgaagaagggtcagacactcgctctggtg
ggcagcagtggctgtgggaagagcacggtggtccaactcctggaacgattctacgaccct
ctatccggaaaagtgctaattgatggtgaggaaataaaaaacttgaatgtccaatggctc
cgagcacatctgggcatcgtgtcccaggagcccatcctgtttgactgcagcattgctgag
aacattgcctatggtgacaacagccggatcgtgtcacaggaagagattgagcaggcagcc
aaagaggccaacatccatcctttcattgaaacgctacctaataaatacaacacccgagtg
ggagacaagggcactcagctctctggaggccagaaacagcgcatcgccatagcacgtgca
ctagttcgacaccctcacattttgcttttggatgaagcaacgtctgctctggatactgaa
agtgaaaagatcgttcaggaagccctggacaaggccagagaagggcgtacctgcattgtg
atcgctcaccgcctgtccaccatccagaatgcagacctcatcgtggtgttccagaacggt
aggatcaaggagcacggcacccaccaacagctgctggcacagaaaggcatctactattcc
atggtcagtgttcaggctggagcaaagcgcttatga
DBGET
integrated database retrieval system
