Suncus etruscus (white-toothed pygmy shrew): 126013357
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Entry
126013357 CDS
T09902
Symbol
SMG7
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG7 isoform X1
KO
K14409
protein SMG7
Organism
setr
Suncus etruscus (white-toothed pygmy shrew)
Pathway
setr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
setr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
126013357 (SMG7)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
setr03019
]
126013357 (SMG7)
Messenger RNA biogenesis [BR:
setr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
126013357 (SMG7)
mRNA cycle factors
Common to processing body (P body) and stress granule
126013357 (SMG7)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
TPR_2
Motif
Other DBs
NCBI-GeneID:
126013357
NCBI-ProteinID:
XP_049632374
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All DBs
Position
7:complement(53443791..53488795)
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AA seq
1135 aa
AA seq
DB search
MSLPSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDLYQKMLVTDLEYALDKKVEQDL
WNHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCR
VKSSQLGILSNKQSHPSTIVKPQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQ
LVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDEV
RTKWGVSDFIKAFIKFHGHVYLSKSLEKLSPLREKLEEQFKRLLFQKAFNSQQLVHVTVI
NLFQLHHLRDFSSETESHSYSQDEQLCWTQLLALFMSFLGTLCKCPLQNSAQEEACSTYP
LPAVKVSMDWLRLRPRVFQEAVVDERQYIWPWLISLLNSFHPHEEDLSNTNATPLPEEFE
LQGFLALRPSFRNLDFSKGHQGITGDKEGQQCQIRQQRLISIGKWIADNQPRLIQCENEV
GKLLFITEIPELILEEPSEAKENLIPQDGPVTEPLCTDGNPGLKSVLSVGRNLSNHCDPG
DKPVVTFQENIKPREVNRDQGRSFPPKEVKSQTELRKTPVSEVRKTPVTQSPSQASNSQF
IPIHHPGAFPPLPSRPGFPPPTYVIPPPVAFPMGSGYTFPAGVSVPGTYLQPAAHAPAGK
QVQAGKQSHIPYSQQRPSGPGPLTQGAPQPQPPSQPPLAPLPAQPAAQPAGPLQVHALSQ
QQSPTKAGPALGKSPPHHSGFQQYPQADTSKQLWNPPQVQGPLGKILPVKPSCYLQAQAP
LKLFEPPLQPPGVQQPPLEKKMKPFRLEPYNHSPSEAKGPEFYWDSACSLAQPTGLERRG
KRPPGVFRPEPDPTPRMPFEDPKGSPLLPPDLFKSLAALEDEDELLFSNPPDLYPALLGP
LASLPGRSLFKSLLEKPSELISHSSSFLSLTTTGFSLNQERHPSNSVFNEVYGKTLSSSS
KGELPPTMAPQETSLYSLFEGTPWSPSLPASSDHSTPASQSPHSSNPSSLPSSPPTHNHS
TTPFSTFGPIGAPDSRDRRSSDRWKADKPAMGGFGIDYLSATPSSESTWHQASSPGGTWT
SHGPTMEDSSAVLMESLKSIWSSSMMHPGPSALEQLLMQQKQKQQRGHGTMNPPH
NT seq
3408 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgccgagcgcgcagtatctccggcaggcagaagtcctgaaggctgacatgaca
gattcaaagctgggtccagctgaggtctggacatcccgacaggcattacaggacctctac
cagaagatgctcgtcactgatctggagtatgctttggataaaaaagtagagcaggatctc
tggaatcatgcctttaaaaatcagatcaccacactccaaggtcaggccaagaaccgagcg
aacccgaaccggagcgaggtccaggcaaacctctctctattcttagaggcagctagtggc
ttctacacacagctgctacaggagctgtgcaccgtgttcaatgttgatttgccctgtcgc
gtgaaatcctcccagctgggcatcctcagcaataaacagtcacaccccagcaccatcgtg
aagccgcagtccagctcctgctcctacatctgccagcactgccttgtgcacttgggggac
atcgcccgatacaggaaccaaaccagccaggcagaatcctattatcggcacgctgctcag
cttgtcccctccaatggtcagccttacaatcagctggcgatcttagcctcttccaagggg
gaccacctgaccaccatattctactactgcagaagcatcgctgtcaagttccctttcccc
gctgcctccaccaatctgcagaaagcactttcgaaagcactggaaagccgggatgaggtg
agaaccaagtggggtgtttcggacttcatcaaggccttcatcaagttccatggccacgtg
tacctgagcaagagcctggagaagttgagcccactccgggagaagttggaagagcagttt
aagcggctgctcttccagaaggccttcaactcacagcagctggtgcacgtcacagtcatc
aacctcttccagctgcaccacctgcgcgacttcagcagcgagactgagtcacacagctat
agccaggacgaacagttgtgctggacacaactgctggcgctcttcatgtcttttcttggc
accctgtgcaaatgcccgcttcagaactcggcccaggaagaggcctgcagcacatacccg
cttcctgccgtcaaggtttccatggattggctacgtctacggcctcgggtcttccaggag
gccgtggtggatgaaaggcaatacatctggccctggctgatatcacttctgaacagtttc
catccccacgaggaggatctctccaacacaaacgccacgccacttcctgaggagtttgag
ttacaaggattcctggccttacgaccttctttcaggaacttggacttctccaaaggccac
cagggtatcacaggcgacaaagaaggtcagcagtgccagatccgccaacagcgcctcatc
tccatcggcaagtggattgccgacaaccagcccaggctgattcagtgtgaaaatgaggta
gggaaattgttgtttatcacagagatcccagagttaatactggaggaacccagtgaagcc
aaagagaacctcattcctcaagatgggcctgtgacagagcccttgtgcaccgacgggaac
ccagggctaaagtcagtgctgtctgtgggccgaaaccttagcaaccactgtgaccctgga
gacaagcctgtggtcaccttccaggagaacattaagcctcgagaagtgaatcgagaccaa
ggaaggagttttcctcccaaggaggtgaagtcccagacagaactaagaaagactccagtg
tccgaagtcaggaaaacacctgtgacccagtcaccgagtcaagccagtaattcccagttc
atccccatccatcaccctggagcctttccgcctctccccagccggccagggtttccaccc
ccgacatacgtgatacccccaccggtggcatttcccatgggctcaggttacaccttccca
gccggtgtttcagtgccggggacctaccttcagcctgcagctcatgctccagcaggaaag
caggtgcaagctgggaaacagtcccacattccgtacagccagcagcggccctcaggccca
gggcccctgactcagggggctccacagccacaacccccctcgcagccccccctggcgcct
ctaccagctcagccagcggcacagccagcaggcccactgcaggtgcatgcactcagccaa
cagcagtcccccaccaaggctgggccagcactaggcaagagtcccccgcaccactctgga
ttccaacagtacccacaggcagacacctccaaacagctgtggaatccacctcaggttcaa
ggtccgctggggaaaatcctgcctgtgaagccgtcctgctacctgcaggcccaggccccc
ctcaaactctttgagccgcccctgcagccgcccggcgtgcaacagccaccactagagaag
aagatgaagcctttccgcctggagccatataaccacagcccctctgaggctaagggaccc
gaattctactgggactcggcctgtagcctggcccagcccactggcctggagcgccggggc
aagcggccacctggagtcttccggcccgagcctgaccctacacccaggatgcccttcgag
gaccccaaaggctcccctctgctccccccggacctgtttaagagtctggctgccttggag
gatgaggacgagctgcttttctctaaccctcctgacctttaccccgccctgctcgggcct
ctcgcctctctccctggaaggagcctctttaaatccttgctggagaagccgtcggagcta
atctcacactcatcctccttcctgtccctcacaaccactggcttctcactcaaccaggag
agacaccccagcaacagcgtcttcaatgaggtctatggcaagaccctgagctccagctcc
aaaggggagctgccccccaccatggcccctcaggagacatcgctgtactccttgttcgag
gggaccccatggtctccatcgcttcctgccagctcagatcactcgacaccagccagccag
tctcctcattcctcaaaccccagcagcctgcccagttcccctccaacccacaatcatagc
accacccccttctccacctttggccccatcggggcaccggacagcagggatcggagaagc
tcagatcggtggaaagctgacaagccagccatgggtgggtttggaatcgattacctctcg
gctacgccatcctcggagagcacctggcatcaggccagctcacccggcggtacctggacc
agccacggccccaccatggaggactcatctgcagtgctcatggagagtctaaagtcgatc
tggtccagttccatgatgcaccccggcccttcagctctggagcagctgctgatgcagcag
aagcagaagcagcagcggggtcacggcaccatgaaccccccacactga
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