Suncus etruscus (white-toothed pygmy shrew): 126013361
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Entry
126013361 CDS
T09902
Symbol
RC3H1
Name
(RefSeq) roquin-1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
setr
Suncus etruscus (white-toothed pygmy shrew)
Brite
KEGG Orthology (KO) [BR:
setr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
setr03000
]
126013361 (RC3H1)
04121 Ubiquitin system [BR:
setr04121
]
126013361 (RC3H1)
Transcription factors [BR:
setr03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
126013361 (RC3H1)
Ubiquitin system [BR:
setr04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
126013361 (RC3H1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-RING_UBOX
Prok-RING_4
zf-RING_2
zf-C3HC4_4
zf-CCCH
zf-C3HC4_3
zf-C3HC4
zf-CCCH_UNK
zf-C3HC4_2
zf_CCCH_4
FYVE
zf-CCCH_4
Vesi_VP2
PaaA_PaaC
Baculo_IE-1
zf-RING_4
zf-RING_6
zf-RING_10
Motif
Other DBs
NCBI-GeneID:
126013361
NCBI-ProteinID:
XP_049632380
LinkDB
All DBs
Position
7:57861320..57890088
Genome browser
AA seq
1109 aa
AA seq
DB search
MPVQAPQWTDFLSCPICTQTFDETIRKPISLGCGHTVCKMCLNKLHRKACPFDQTTINTD
IEFLPVNSALLQLVGAQVPEQQPITLCSGVEDTKHYEEAKKCVEELALYLKPLSSARGVG
LNSTSQSVLSRPMQRKLVTLVHCQLVEEEGRIRAMRAARSLGERTVTELILQHQNPQQLS
SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT
SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEAGLRIAP
DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL
ANIDPSPDAPPPSWEQLENGLVAVRTVVHGLVDYIQNHSKKGADQQQPPQHSKYKTYMCR
DMKQRGGCPRGASCTFAHSQEELEKFRKMNKRLVPRRPLSASLGQLNEVGLPAAAILPEE
AGLELPSRKAPTLPNGIVATGGTVAKLIPRGTEPGYEASLKPGKMEHQSSSAPGSPPDLL
DSVPKTISTLPVNPHPVPPRGPTDLSSMPVTKPPQMVSRMSPLYPAQQADVYYPDPRAPA
APPFEPAPYQPGMYYPPPPCVSRFVRPPPSEPAPPYLDHYPPYLQDRVVSSQYGAQPQQY
PPMYPAHYDGRRLYPPQSYGREELFRESPMPVEIPPAAVTPYVPESRDRYPQMDGYYPVA
PHPAQIRPYMRESPYSRFPPPPQPHPSLDELHRRRKEIMAQLEERKVISPPPFAPSPTLP
PAYHPEEFLDEDLKVAGKYKGNDYSQYSPWSCDTIGSYIGTKDAKPKDVVASGSMEMMNV
ESKGMRDQRLDLQRRAAETSDDDLIPFGDRPTVSRFGAISRTSKTIFPGAPTKSLNLSEL
NPYGIHGGWGGIPYSQHPNTPSPGHFNDRERISMTEVASHGKPLPSAEREQLRLELQQLN
HQISQQAQLRGLEREGGAVAAPPQPLPPPPKWPGMISSEQLSLELHQVEREIGKRTRELR
MENQCSLDMKSKLNTSKQAENGQPESQNKVLAEDLALTFSDVPDGSTLTQENISLLTNKT
SSLTLSEDPEGGGDGSNSPRPGVTLSSAP
NT seq
3330 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtgcaggcgccacaatggacggatttcctctcctgccctatttgcactcagact
ttcgacgaaactatccgcaaacccatcagtttgggttgtggccatactgtctgcaaaatg
tgcctgaataaactccaccgcaaggcatgtccatttgaccagactactatcaatactgat
attgagttcctcccagtgaattcagcattactgcagctcgtgggtgctcaggtccctgag
cagcagcccattactttgtgtagtggagttgaagatacaaagcactatgaggaagccaag
aaatgtgtggaagaattagccttgtacctgaaaccactcagcagtgccagaggagtgggt
ctgaatagcacatctcagagtgttctgagtcgacccatgcaaaggaagctggtgactctg
gtccactgccaacttgtggaagaggaaggcaggattcgtgccatgagggctgctcggtcc
ttaggggaacggacagtcacggagctcatcctgcagcaccagaaccctcagcagctgtcc
tctaatctctgggcggccgtcagggcccgaggctgccagtttcttggaccagcgatgcag
gaggaagccttgaagctggttctgctggcccttgaagatggttctgctctatccaggaaa
gtcttggttctctttgtggtgcaaaggttggagccacggttcccgcaggcctctaaaaca
agcattgggcatgttgtccagctcctttatagagcctcctgcttcaaggtcaccaagcgt
gatgaagactcctctctaatgcagctgaaggaagaattccggacctacgaagcgcttagg
cgcgaacacgactctcagatcgtgcagattgccatggaggcaggtctgcgcatcgcccca
gatcagtggtcctccctgctctatggggatcagtcgcacaagtcgcacatgcagtccatc
attgacaagttgcagaccccagcctcttttgcacagagtgtacaggaactaacgattgct
ctccagcgaactggagacccggcaaacttgaaccggctaagaccccatttggagctgtta
gcaaacattgaccccagtccagatgctcctcctccgtcttgggaacaactagaaaatggg
ctggttgcagtgcgcacagttgttcatgggctggttgattatatccagaaccatagcaaa
aaaggagcagatcagcaacagcctccacagcacagcaagtataagacatacatgtgccgt
gacatgaagcagagaggagggtgcccgcgcggggccagctgcactttcgcccactctcag
gaggaactggaaaaatttcgtaaaatgaacaagcgcctggtccccaggaggccgctgagc
gcatccttgggtcagctcaatgaggtgggcctgccggctgctgccattctccctgaggaa
gctggcttggagttgcctagcaggaaggcacccacactgcccaatgggattgtggctaca
ggtggtactgtggccaagttgattccacggggcaccgagcctggctatgaggctagtctg
aaacccggaaagatggagcaccagagcagcagtgcgcctgggtcccccccagacctgctt
gactctgtccctaagactatttctaccttacctgtgaacccacatcctgtacctccaaga
gggcccacagacctatcttctatgcccgtcaccaaaccacctcagatggtgtctcgaatg
tctccactgtacccagcacagcaagctgacgtttattacccagatccacgggcgccagct
gcacctccctttgagccagcaccctaccagccaggcatgtactaccctccaccaccatgt
gtgtcccgcttcgtcaggccacctccttcagaaccggctccgccctacttggaccattac
cctccctacctccaggaccgagttgtgagctcccagtatggcgcccagcctcagcagtac
ccacccatgtacccagctcactatgatggccgccgactctacccgccccagtcatacggc
agagaggagctgtttcgggagagccccatgcccgtggagatcccgcctgctgccgtcacc
ccctatgtccctgagtccagagatcggtacccacagatggacggttactacccagtggct
cctcatccagcgcagatcagaccctacatgagagagtctccttacagtaggttccctcct
ccacctcagccacaccccagtctagatgagctgcaccgcagacggaaagaaataatggct
cagctagaggagagaaaggtcatttctccacctccttttgcaccctcaccgaccttgcct
cctgcttaccacccagaggagtttctggatgaagatctgaaggtggctgggaaatacaaa
ggaaatgattacagccagtactccccctggtcctgtgacacaattggctcatatatagga
accaaagatgcaaaacccaaagatgtggtggcttcagggagtatggaaatgatgaatgtg
gaaagcaaaggaatgagggaccagaggctggatcttcagaggcgagcagcagaaaccagt
gatgacgacctcattccctttggggaccggcccactgtatctcggttcggtgccatctct
cgaacttccaaaacaatatttccgggcgctcccaccaaatctcttaacctttcagagctt
aatccatatggcatccatggcggctgggggggcatcccatactcacaacatccaaacacg
ccttctccaggacacttcaatgacagagagagaatttccatgaccgaagtggccagtcat
ggaaaaccacttccatctgctgagagggagcaactgcgcctggagctgcagcaactgaat
catcagatcagccaacaggcccagctacgtggactggagagggaggggggtgctgtagcc
gccccgcctcagcccttgcccccaccgcccaagtggcccgggatgatctcaagtgagcag
ctgagcctggaactacatcaagtggaaagggaaattggaaagcggacccgggaactgagg
atggagaaccagtgttctctggacatgaaaagcaaattgaatacgagtaagcaagcagaa
aatggacaaccagaatcacagaataaagtcctagctgaggaccttgcattaacattcagt
gatgtgccagatggatccaccttgacacaagagaatatcagcctgcttacaaataagacc
agctctctgaccctgtcagaggaccccgagggcggaggggacggcagtaactccccgaga
ccaggagtcacactgagctctgctccctaa
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