Suncus etruscus (white-toothed pygmy shrew): 126013401
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Entry
126013401 CDS
T09902
Symbol
TAF5L
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
setr
Suncus etruscus (white-toothed pygmy shrew)
Pathway
setr03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
setr00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
126013401 (TAF5L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
setr03021
]
126013401 (TAF5L)
03036 Chromosome and associated proteins [BR:
setr03036
]
126013401 (TAF5L)
Transcription machinery [BR:
setr03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
126013401 (TAF5L)
Coactivators
SAGA/TFTC/STAGA complex
126013401 (TAF5L)
Chromosome and associated proteins [BR:
setr03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
126013401 (TAF5L)
STAGA complex
126013401 (TAF5L)
TFTC complex
126013401 (TAF5L)
SAGA complex
126013401 (TAF5L)
SLIK complex
126013401 (TAF5L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
Beta-prop_CAF1B_HIR1
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
TFIID_NTD2
EIF3I
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Beta-prop_TEP1_C
Beta-prop_SCAP
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_1st
ANAPC4_WD40
WDR90_beta-prop_4th
Beta-prop_IFT122_1st
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
NBCH_WD40
Beta-prop_SPT8
Beta-prop_HPS5
Beta-prop_DCAF4
Beta-prop_EIPR1
Beta-prop_Vps41
WD40_RFWD3
Beta-prop_WDR19_1st
PEP5_VPS11_N
PROPPIN
Beta-prop_IP5PC_F
Ge1_WD40
WD_LRWD1
vATP-synt_AC39
Nbas_N
Motif
Other DBs
NCBI-GeneID:
126013401
NCBI-ProteinID:
XP_049632443
LinkDB
All DBs
Position
7:50902253..50924735
Genome browser
AA seq
589 aa
AA seq
DB search
MKRVRTEQIQMAVSCYLKRRQYVDSDGPLKQGLRLSQTAEETAANLTVQSESGCANIVSA
APCQAEPQQYEVQFGRLRNFLTDSDSQHSREVMPLLYPLFVYLHLNLVQNSSKSTVESFY
SRFHGMFLQNASQKDVIEQLQTTQSLQDILSNFKLRAFLDNKYVVRLQEDSYNYLIRYLQ
SDNNTALCKVLTLHIHLDVQPAKRTDYQLYASGSSSRSDGNGLEPTDIPAPILQNEAALE
VLQESIKRVKDGPPSLTTICFYAFYNTEHLLNTAEISPDSKLLAAGFDNSCIKLWSLRSK
KLKSKPHQVDISRIHLACDILEEEDDEDDNTGTEMKILRGHCGPVYSTRFLTNSTGLLSC
SEDMSIRYWDLGSFTNTVLYQGHAYPVWDLDISPYSLYFASGSHDRTARLWSFDRTYPLR
IYAGHLADVDCVKFHPNSNYLATGSTDKTVRLWSAQQGNSVRLFTGHRGPVLSLAFSPNG
KYLASAGEDQRLKLWDLASGILYKELRGHTDNITSLTFSPDSSLIASASMDNSVRVWDIR
NTYCSAPADGSSSELVGVYTGQMSNVLSVQFMACNLLLVTGITQENQEH
NT seq
1770 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgagtgcgcactgaacagattcagatggcagtgtcctgctacctcaaacgccgg
caatacgtggactcagacggtcccctcaaacaaggactgcgactttctcagacagcggaa
gaaacggcagccaatcttacagttcaatcagaatctggttgtgccaacatagtgtctgca
gctccatgccaggcagagccccaacaatatgaagtacaatttggacgactgaggaatttt
ctcactgattctgattcccaacatagccgtgaagtgatgcctcttctctatcctctcttt
gtctacctccatctcaacctggttcagaacagttcgaagagcacagtggaaagtttttac
agccgcttccacggaatgtttctacagaatgctagccagaaggatgtcattgagcagcta
cagaccactcaaagcctccaggacatcctgtctaacttcaagcttcgagcattcctagat
aacaaatatgttgtccgtctccaagaagatagctacaactaccttatccgctacctccag
agtgacaacaatactgctctgtgcaaagtcctcaccttgcatatccatcttgatgtgcag
cctgccaagagaacagactaccagctgtatgccagtggcagttcctcacgaagtgatggc
aatggcttagagccaactgacatacctgcccctattcttcaaaatgaggcagctctggaa
gtcttgcaggagagcattaaacgtgtcaaggatggccctccttctcttaccaccatctgt
ttctatgccttctataatacagaacatctgttgaatactgcagaaatctccccagatagc
aagttgcttgctgctgggtttgacaactcctgtattaaattatggagtttacgatccaag
aagttaaaatcaaaaccccatcaagttgatatttcccgcattcacttggcttgtgatatt
ttggaagaggaggatgatgaggatgacaatacaggcacagaaatgaagatactgcgggga
cactgtggaccagtgtacagtacgaggtttctcacaaacagcacagggttgctctcttgt
tcagaagacatgtccattaggtactgggaccttgggagtttcaccaacactgtgttatac
caaggacatgcctaccctgtatgggacctggacattagcccttacagcttgtacttcgcc
agtgggtctcatgatcgcactgcaaggctgtggtcatttgatcggacgtaccctctgaga
atatatgcaggacacctggcagatgtggactgtgttaaattccaccctaattcaaactat
ttagctacaggctctactgacaaaactgttcgactatggagtgctcagcagggaaactcg
gtgaggctcttcacaggtcaccgtggccctgtgctttctcttgccttctctcccaatggt
aagtacttggcatcagctggtgaggatcagcgtttgaagctatgggacttggcctctggg
atcctttataaagaactgcgaggccatacagacaatattaccagcctcaccttcagtcca
gacagtagcctgatcgcctctgcatccatggacaactctgtgcgtgtctgggacattaga
aacacttactgcagtgcacctgctgatggctcctccagtgaacttgtgggtgtgtatact
gggcagatgagcaatgtactgagtgtccagttcatggcctgtaatctccttctagtgaca
ggaatcacacaagaaaatcaggaacattaa
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