Suncus etruscus (white-toothed pygmy shrew): 126013438
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Entry
126013438 CDS
T09902
Symbol
EIF4A3
Name
(RefSeq) eukaryotic initiation factor 4A-III
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
setr
Suncus etruscus (white-toothed pygmy shrew)
Pathway
setr03013
Nucleocytoplasmic transport
setr03015
mRNA surveillance pathway
setr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
setr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
126013438 (EIF4A3)
09122 Translation
03013 Nucleocytoplasmic transport
126013438 (EIF4A3)
03015 mRNA surveillance pathway
126013438 (EIF4A3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
setr03019
]
126013438 (EIF4A3)
03041 Spliceosome [BR:
setr03041
]
126013438 (EIF4A3)
03009 Ribosome biogenesis [BR:
setr03009
]
126013438 (EIF4A3)
03012 Translation factors [BR:
setr03012
]
126013438 (EIF4A3)
Enzymes [BR:
setr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
126013438 (EIF4A3)
Messenger RNA biogenesis [BR:
setr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
126013438 (EIF4A3)
mRNA cycle factors
Stress granule specific factors
126013438 (EIF4A3)
Spliceosome [BR:
setr03041
]
Complex C
Other components
EJC/TREX
126013438 (EIF4A3)
Ribosome biogenesis [BR:
setr03009
]
Eukaryotic type
90S particles
Helicases
126013438 (EIF4A3)
Translation factors [BR:
setr03012
]
Eukaryotic type
Initiation factors
eIF-4
126013438 (EIF4A3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Cas3-like_C_2
AAA_30
AAA_22
Flavi_DEAD
Motif
Other DBs
NCBI-GeneID:
126013438
NCBI-ProteinID:
XP_049632496
LinkDB
All DBs
Position
1:complement(206924747..206934692)
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AA seq
411 aa
AA seq
DB search
MAATATMATSGSARKRLLKEEDMTKVEFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEK
PSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAV
QIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRA
IKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRIL
VKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREA
NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNREL
YIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADLI
NT seq
1236 nt
NT seq
+upstream
nt +downstream
nt
atggcggccacggcgaccatggcgacctcgggctcggcgcgcaagcggctgctcaaggag
gaggacatgaccaaggtggagttcgagacgagcgaggaggtggacgtgactcccacgttc
gacaccatgggcctgcgcgaggacttgctgcgcggcatctacgcctacggttttgagaaa
ccatctgcgattcagcagcgagctatcaagcagatcatcaaagggagggatgtcattgca
cagtctcagtccggcaccggcaaaactgccaccttcagcatctcggttcttcagtgccta
gatattcaggttcgtgagacccaggctctgattctggcgccgacacgggaattggctgtg
cagatccagaagggcctgctggctctgggtgactacatgaatgtgcagtgccacgcctgc
atcgggggcaccaacgtaggagaggacatccggaagctggactatgggcagcacgtggtg
gccggcacacctgggcgtgtctttgacatgattcgacgcagaagcctaaggactcgcgcc
atcaagatgctggtgctggacgaggccgatgagatgctgaacaaaggtttcaaggagcag
atctacgacgtgtaccggtacctgccgccagccacacaggtggtactcatcagcgccacg
ctgccacacgagattctggagatgaccaacaagttcatgacagaccccatccgaatcctg
gtgaagcgtgatgagttgaccctggaaggcatcaagcaattcttcgtggcggtggagcgg
gaggagtggaagttcgacacgctgtgcgacctctatgacacgctcaccatcacgcaggcc
gtcatcttctgcaacaccaaacggaaggtggactggctgacagagaagatgcgagaagcc
aacttcacggtctcgtctatgcatggagacatgccccagaaggagcgggagtccatcatg
aaggagttccgctctggcgccagccgggtgctcatctccacggacgtgtgggcccgaggc
ctcgacgtccctcaggtatccctcatcatcaactatgacctgcccaacaatcgtgagctc
tacatccacaggatcgggcggtcgggccgctatggccgcaagggggtggccatcaacttc
gtgaagaacgatgacatccgcatcctgcgggacatcgagcagtactactccacccagatc
gacgagatgcccatgaacgttgctgatctcatctga
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