Suncus etruscus (white-toothed pygmy shrew): 126013847
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Entry
126013847 CDS
T09902
Symbol
COPA
Name
(RefSeq) coatomer subunit alpha isoform X1
KO
K05236
coatomer subunit alpha
Organism
setr
Suncus etruscus (white-toothed pygmy shrew)
Brite
KEGG Orthology (KO) [BR:
setr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
setr04131
]
126013847 (COPA)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
setr04147
]
126013847 (COPA)
Membrane trafficking [BR:
setr04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
126013847 (COPA)
Exosome [BR:
setr04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
126013847 (COPA)
Exosomal proteins of bladder cancer cells
126013847 (COPA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
COPI_C
B-prop_COPA_B_2nd
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
WDR55
Beta-prop_EML_2
TPR_COPA_B
EIF3I
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
Beta-prop_EML
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_C
Beta-prop_EIPR1
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_1st
WD40_RFWD3
ANAPC4_WD40
WD40_MABP1-WDR62_2nd
Beta-prop_SCAP
Beta-prop_SPT8
Beta-prop_IFT140_1st
Beta-prop_RIG_2nd
NBCH_WD40
Motif
Other DBs
NCBI-GeneID:
126013847
NCBI-ProteinID:
XP_049633003
LinkDB
All DBs
Position
7:61939175..61957720
Genome browser
AA seq
1233 aa
AA seq
DB search
MLTKFETKSARVKGLSFHPKRPWILTSLHNGVIQLWDYRMCTLIDKFDEHDGPVRGIDFH
KQQPLFVSGGDDYKIKVWNYKLRRCLFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRVW
NWQSRTCVCVLTGHNHYVMCAQFHPSEDLVVSASLDQTVRVWDISGLRKKNLSPGAVESD
VRGITGVDLFGTTDAVVKHVLEGHDRGVNWAAFHPTMPLIVSGADDRQVKIWRMNESKAW
EVDTCRGHYNNVSCAVFHPRQELILSNSEDKSIRVWDMSKRTGVQTFRRDHDRFWVLAAH
PNLNLFAAGHDGGMIVFKLERERPAYAVHGNVLHYVKDRFLRQLDFSSSKDVAVMQLRSG
SKFPVFNMSYNPAENAVLLCTRASNLENSTYDLYTIPKDADSQNPDAPEGKRSSGLTAVW
VARNRFAVLDRMHSLLIKNLKNEITKKVQVPNCDEIFYAGTGSLLLRDAESVTLFDVQQK
RTLASVKISKVKYVIWSADMSHVALLAKHEHSCPLPLTAIVICNRKLEALCNIHENIRVK
SGAWDESGVFIYTTSNHIKYAVTTGDYGIIRTLDLPIYVTRVKGNNVYCLDRECRPRVLT
IDPTEFKFKLALINRKYDEVLHMVRNAKLVGQSIIAYLQKKGYPEVALHFVKDEKTRFSL
ALECGNIEIALEAAKALDDKSCWEKLGEVSLLQGNHQIVEMCYQRTKNFDKLSFLYLITG
NLEKLRKMMKIAEIRKDMSGHYQNALYLGDVSERVRILRNCGQKSLAYLTAATHGLDEEA
ESLKETFDPEKETVPDIDPDARLLQPPAPIMPLDTNWPLLTVSKGLFESSIASKGKGGVL
AADIDIDTVVTEGWGEDAELQLDEDGFVEAGEGFGDDTLGKGQEEGGGWDVEEDLELPPE
LDLPLSAAGGAEDGFFVPPTKGTSPTQIWCNNSQLPVDHILAGSFETAMRLLHDQVGVTQ
FRPYKQLFLQTFARGRTTFQALPCLPSMYSYPQRNWKDAGLKGGIPAVGLKLNDLIQRLQ
LCYQFTTVGKFEEAVEKFRSILLSVPLLVVDNKQEIAEAQQLITICREYIVGLSMEIERK
KLPKDSIEQQKRICEMAAYFTHSNLQPVHMVLVLRTALNLFFKLKNFKTAATFARRLLEL
GPKPEVAQQTRKILSACEKNPTDACQLNYDMHNPFDICAASYRPIYRGKPVEKCPLSGAC
YSPEFKGQVCRVTTVTEIGRDVIGLRISPLQFR
NT seq
3702 nt
NT seq
+upstream
nt +downstream
nt
atgctcaccaagttcgagaccaagagcgcgcgggtgaaagggctcagcttccaccccaaa
cgcccctggatcctcaccagcctgcacaatggcgtcatccaattgtgggactacaggatg
tgcactctcattgacaagtttgatgagcatgatggtcctgtgcgtggcattgacttccac
aagcagcagccactctttgtctctggaggtgatgactacaagatcaaggtgtggaactac
aagcttcggcgctgccttttcacactgctcgggcatctggattatatccgtaccacattc
ttccaccatgagtatccctggatcctgagcgcctctgatgaccagaccattcgcgtgtgg
aactggcagtccaggacctgcgtctgcgtgctcacagggcacaaccattatgtgatgtgt
gcgcagttccacccttctgaggacctggtagtatcggccagcctggatcagactgtgcgt
gtctgggacatctctggtcttcggaagaagaacctgtcaccgggggctgtggaatcagat
gtccggggcataactggagtggatctgtttggcaccactgatgctgtggtcaagcatgtg
ctggagggccatgatcggggcgtgaactgggctgctttccaccccaccatgcctctgatt
gtgtctggggccgatgaccgccaggtgaagatctggcgcatgaatgagtccaaggcctgg
gaggtagacacttgccgtggccactacaacaatgtgtcctgcgctgtcttccaccctcgc
caggagctcatcctcagcaactctgaggacaagagcatccgggtctgggacatgtccaag
aggactggagttcagaccttccgcagggaccacgaccgcttctgggttctcgccgcgcac
cccaacctcaacctctttgcagcaggccatgacggtggcatgattgtgttcaagctggag
cgggagcgcccagcctacgctgtgcatggcaacgtactgcactatgtcaaggaccgcttc
ctgcggcagctggacttcagcagctccaaggatgtggcagtaatgcagctgcgcagtgga
tccaagttccctgtgttcaatatgtcctacaaccctgcagagaacgcagtgctgctgtgc
acaagagccagcaacttggagaatagcacctatgacctgtacactatccccaaggacgcg
gactcgcagaacccagatgcacctgaagggaagcgctcctcaggcctgacagccgtgtgg
gtcgcccgcaaccgctttgctgtcctggaccgcatgcactcgctccttatcaagaacctg
aagaacgagatcactaagaaagtgcaggtgcccaactgcgatgagatcttctacgcgggc
accggcagcctgctgctgcgggatgcagagtctgtcaccctgttcgatgtgcagcagaag
cgcaccctggcttctgtgaagatttccaaggtgaagtacgtgatctggtcagcagatatg
tcacatgtggctctcctggccaaacatgagcactcatgccctctgcctcttacagctatt
gtgatctgtaaccgcaaactggaggctctgtgtaacattcacgagaacatccgcgtcaag
agtggggcatgggacgagagtggggtatttatctataccaccagcaaccacatcaagtat
gctgtcaccacgggggattatgggatcatccggaccctggacctgcccatctatgtcacg
agggtgaagggcaacaacgtctactgcctggaccgggagtgccgcccacgggtgctcacc
attgaccccactgagttcaagttcaagttggccctgatcaataggaagtatgatgaggtg
ctgcacatggtgcggaatgccaagctggtaggccagtccatcattgcctacctgcagaag
aagggctaccctgaggtggctctgcactttgtcaaggatgagaaaacacgctttagcctg
gccctggagtgcgggaacatagagattgccctggaagcagccaaagccctggatgacaag
agctgctgggagaagctaggggaggtgtcactgctacagggcaaccatcagattgtggag
atgtgctaccagcgcaccaagaacttcgacaagctctccttcctctacctcatcacaggc
aacctggagaagctgcgcaagatgatgaaaattgccgagatccgcaaggatatgagtggc
cactaccagaatgccctgtacctgggtgatgtgtcagagcgtgtgcgcatcctccggaac
tgtggacagaagtccctggcctacctcactgctgccactcatggcctggatgaggaggcc
gagagcctgaaagagaccttcgaccccgagaaggagactgtccctgatattgaccctgat
gctcggctgctacagccgccagcccccatcatgccacttgataccaactggccactgctg
accgtgtccaaggggctctttgaaagctccattgccagcaaagggaaaggtggtgtgctg
gctgcggacattgacatagatactgtggtcactgagggctggggcgaggatgctgagctg
caattggatgaagatggatttgtggaggctggtgagggttttggggacgacaccttgggg
aagggacaggaagaaggaggcggctgggacgtggaagaggacctggagctgccccctgag
ctggacctacccctttctgcagctggaggtgctgaggatgggttcttcgtgccccccacc
aaagggactagtcccacacagatctggtgtaataattctcagctcccagttgaccacatc
ctggcaggctcctttgagacagccatgcggctgctccacgaccaggtaggggtgacccag
ttcaggccgtacaagcagctgttcctgcagaccttcgcccgcggccgcaccaccttccag
gctctgccctgcttgccctccatgtacagttacccacagcgcaactggaaagatgcaggg
ctaaagggcggcatccctgctgtgggcctgaagctcaatgacctcatccagcgcttgcag
ctctgctaccagttcaccactgttggcaagttcgaggaggctgtggaaaagttccgctcc
atcttgctcagcgttccactgctggtggtggacaacaagcaggagattgctgaggctcaa
cagctcatcaccatctgccgcgagtacatcgtgggcctgtccatggagatcgaacgaaag
aagctgcccaaggactcaattgagcagcagaaacgcatttgtgagatggctgcctacttc
acacactccaacctgcagcctgtgcacatggtgctggtactgcgcacagccctcaacctc
ttcttcaagctcaagaatttcaagactgcggcaacctttgcacggcgtttgctggagctg
gggcctaagcctgaggtggctcagcagacccggaagatcctgtcagcatgtgagaaaaac
cccacggatgcctgccagctcaactatgacatgcacaacccctttgacatttgtgctgcc
tcttaccggcccatctaccgagggaagccagtggagaagtgcccgctgagcggggcctgc
tactcccccgagttcaagggccaagtgtgcagggtcaccacggtgacagagattggcaga
gatgtcatcggcctgcgcatcagcccactgcagtttcgttaa
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integrated database retrieval system
