KEGG T09902: 126014024

Suncus etruscus (white-toothed pygmy shrew): 126014024

Entry

126014024         CDS       T09902

Symbol

SMARCC1

Name

(RefSeq) SWI/SNF complex subunit SMARCC1

K11649

SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C

Organism

setr Suncus etruscus (white-toothed pygmy shrew)

Pathway

setr03082

ATP-dependent chromatin remodeling

setr04714

Thermogenesis

setr05225

Hepatocellular carcinoma

Brite

KEGG Orthology (KO) [BR:setr00001]
09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    126014024 (SMARCC1)
09150 Organismal Systems
  09159 Environmental adaptation
   04714 Thermogenesis
    126014024 (SMARCC1)
09160 Human Diseases
  09162 Cancer: specific types
   05225 Hepatocellular carcinoma
    126014024 (SMARCC1)
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:setr03021]
    126014024 (SMARCC1)
   03036 Chromosome and associated proteins [BR:setr03036]
    126014024 (SMARCC1)
Transcription machinery [BR:setr03021]
Eukaryotic type
  RNA polymerase II system
   Coactivators
    BAF/PBAF complex
     126014024 (SMARCC1)
Chromosome and associated proteins [BR:setr03036]
Eukaryotic type
  Chromatin remodeling factors
   BAF complex
    126014024 (SMARCC1)
   PBAF complex
    126014024 (SMARCC1)
   GBAF(ncBAF) complex
    126014024 (SMARCC1)

SSDB

Motif

Pfam:

SWIRM-assoc_3 SWIRM-assoc_1 SWIRM SWIRM-assoc_2 Myb_DNA-binding Myb_DNA-bind_6 HEAT_GCN1 Chromo DUF919 BRCT_2 SpeFL

Other DBs

NCBI-GeneID:

126014024

NCBI-ProteinID:

XP_049633291

LinkDB

Position

7:complement(120813647..120939484)

AA seq 999 aa
MDFKAGGTLCHILGAAYKYKNEQGWRRFDLQNPSRMDRNVEMFMNIEKTLVQSNCLTRPN
IYLIPDIELKLANKLKDIIKRHQGTFTDEKSKASHHIYPYPSSQEDEEWLRPVMRKDKQV
LVHWGFYPDSYDTWVHSNDVDAEVEDPPIPEKPWKVHAKWILDTDVFNEWMNEEDYEVDE
NRKPVNFRQRISTKNEEPVRSPERRDRKASANARKRKHSPSPPPPPPTESRKKSGKKGQA
SLYGKRRNQKEEDEQEDLTKDMEDPTPVPNIEEVVLPKNVNPKKDSENTPVKGGTVADLD
EQDEEAVTTGGKEDEDPGKGDQSRSVDPGEDNVTEQTNHIIIPSYASWFDYNCIHVIERR
ALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEYLTSTACRRNLTGDVCAVMRVHAFL
EQWGLVNYQVDPESRPMAMGPPPTPHFNVLADTPSGLVPLHLRSPQIPAAQQMLNFPEKN
KEKPIDLQNFGLRTDIYSKKTLAKSKGASAGREWTEQETLLLLEALEMYKDDWNKVSEHV
GSRTQDECILHFLRLPIEDPYLENSDASLGPLAYQPVPFSQSGNPVMSTVAFLASVVDPR
VASAAAKAALEEFSRVREEVPLELVEAHVKKVQEAARASGKVDPTFGLESSCIAGTGPDE
PEKLEAPEEEKMETDADGQQPEKAENKGENEMDENDKAQDGENEKNIEKEQDSEVSEDIK
SEEKETEENKELTESCKERESDIGKKKVEHEISEGNVATAAAAALASAATKAKHLAAVEE
RKIKSLVALLVETQMKKLEIKLRHFEELETIMDREKEALEQQRQQLLTERQNFHMEQLKY
AELRARQQMEQQQHGQNPQQAHQHSGGPGLAPLGAAGHPGMMPHQQPPPYPLMHHQMPPP
HPPQPGQLPGPVSMLPGQPMPGRMIPTVAANIHPPGSGPAPPGMPPMPGNILGPRVPLTA
PNGMYPPPPQQPQQQPLPPPPADGVPPPPAPGPPASAAP

NT seq 3000 nt +upstreamnt +downstreamnt
atggatttcaaagctggaggcaccttgtgtcatattcttggggctgcttacaagtataaa
aatgaacagggatggcggaggtttgatctacagaatccatcccgaatggatcgtaatgtt
gaaatgtttatgaacattgaaaaaacattggtacagagtaattgtcttaccagacccaac
atctacctcattccagacattgaactgaagttggctaacaaattgaaagatatcatcaaa
cggcatcagggtacatttactgatgagaagtcaaaagcttcccaccacatttatccatat
ccttcctcacaggaggatgaagaatggttgagaccagtgatgagaaaagacaagcaggtg
ttagtgcattgggggttctacccagacagctatgatacatgggtccatagtaatgatgtt
gatgcagaagttgaagatccaccaattccagaaaagccatggaaggttcatgcaaaatgg
attttggacacagatgttttcaatgaatggatgaatgaagaggattatgaggtggatgag
aataggaaacctgtgaattttcgtcagcgaatttcaacaaagaatgaagagccagtcaga
agcccagagagaagagatagaaaagcgtcagcaaatgctcgaaaaagaaaacattcacct
tccccaccgccgccccctcccacagaatctcggaagaagagtgggaagaaagggcaagcg
agcctttatggaaagcgcagaaatcagaaagaggaggatgaacaagaagatcttacaaag
gatatggaggatccaacacctgtacccaacattgaggaagttgtgcttccaaaaaatgtc
aatccaaagaaagatagtgaaaatacacctgttaaaggaggaactgtagcagatctagat
gagcaagatgaagaagcagtcacaacaggaggaaaggaagatgaagatcctggcaaaggg
gatcagagtcggtcagtcgatcctggtgaagataatgtgacagagcaaaccaatcacatt
attattcctagctatgcatcttggtttgattataactgtattcacgtgattgaacgccgt
gctctccctgagttcttcaatgggaagaacaaatccaagactccagaaatatatctggcc
tatcgaaattttatgattgatacatatcgcttaaatccccaagaatatttaaccagcact
gcttgtcgtaggaatttgactggagatgtgtgtgcagtgatgagggttcatgccttttta
gagcagtgggggcttgttaattaccaagtggatccagaaagccgacccatggcaatggga
cctcctcctactcctcatttcaatgtgttagctgataccccatctgggcttgtgcctctg
catcttcgatcacctcagattccagctgctcagcagatgttaaattttcctgagaaaaac
aaggaaaaaccaattgatttacagaactttggtcttcgtactgatatttattccaagaaa
accttagcaaagagtaaaggtgcaagtgctggaagagaatggacagagcaagagaccctt
ctgctactggaggccctggaaatgtacaaggatgattggaacaaagtgtctgaacatgtt
ggaagtcgaactcaggatgaatgcatcctccattttttgagacttcccattgaggaccca
taccttgagaattctgatgcttcccttggacctcttgcctaccagcccgttcccttcagt
cagtctggaaacccagtcatgagcactgttgcatttttagcatctgtagtagatcctcgt
gtggcatctgctgcagcgaaagcagctttggaggagttttctcgagtccgggaagaggtg
ccattggaattggttgaagcgcatgtcaaaaaagtacaagaagcagcgcgagcatctggg
aaagtggaccccacgtttggcctggaaagcagttgcattgcaggcacaggacctgatgag
ccagagaagcttgaagctcctgaagaagaaaaaatggaaacagatgctgatggtcaacag
cctgaaaaggcagaaaacaaaggagaaaatgaaatggatgaaaatgataaagcacaagat
ggagaaaatgaaaaaaatattgaaaaggaacaggatagtgaagttagtgaagatatcaaa
tcagaagaaaaggagaccgaagaaaacaaagaactcactgagagttgtaaagaaagggaa
agtgatattggaaagaagaaagtggaacatgaaatttctgaaggaaatgtcgctacagcc
gcagcagctgctcttgcctcggctgcgaccaaagccaagcatctggctgctgtcgaagaa
cgaaagatcaaatctctggtagctcttctggttgagacacaaatgaagaaactggagatc
aaacttcgacatttcgaagagctggaaactatcatggacagagagaaagaagctttagaa
caacagagacagcagttgcttactgagcgccagaacttccacatggaacagctgaaatat
gctgaattacgcgcccgacagcaaatggaacagcaacagcatgggcagaacccacaacag
gcacaccagcactctggaggacctggcctagcgccacttggagcagcaggccacccgggc
atgatgcctcatcagcaaccccctccctatcctctaatgcaccaccagatgccaccacct
catccaccccagccaggtcagctacccggcccagtttccatgctgcccgggcagcccatg
ccaggccgcatgattcctactgttgcagccaatatccaccccccggggagtggccctgcc
cctcctggtatgcctccaatgccaggaaatatcttaggaccccgggtaccactcacagct
cctaatggcatgtatccccctccgccacaacagccgcagcagcaaccactgccgccaccc
cctgcagatggagtcccaccacctcctgctccaggccctccagcctcagctgcaccctag

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