Suncus etruscus (white-toothed pygmy shrew): 126014185
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Entry
126014185 CDS
T09902
Symbol
PKD1L1
Name
(RefSeq) LOW QUALITY PROTEIN: polycystic kidney disease protein 1-like 1
KO
K04987
polycystin 1L1
Organism
setr
Suncus etruscus (white-toothed pygmy shrew)
Brite
KEGG Orthology (KO) [BR:
setr00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
setr03037
]
126014185 (PKD1L1)
04040 Ion channels [BR:
setr04040
]
126014185 (PKD1L1)
Cilium and associated proteins [BR:
setr03037
]
Primary cilia and associated proteins
Other primary cilia associated proteins
126014185 (PKD1L1)
Ion channels [BR:
setr04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
126014185 (PKD1L1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
REJ
PKD
PLAT
Polycystin_dom
PKD_4
PKD_channel
Glyco_trans_2_3
Motif
Other DBs
NCBI-GeneID:
126014185
NCBI-ProteinID:
XP_049633472
LinkDB
All DBs
Position
7:complement(12506133..12619718)
Genome browser
AA seq
2730 aa
AA seq
DB search
MEAGPVASIYTLNTCFGVLSCRPLESHLHGSWLEDARPFSALLLGTIHPKDQLKGSWPVA
CSDYDQLPPGETLVPGMVESSEDIFDGPERCVQASYPLSLPSGMTVTVECRDLQLCLCSH
RLPAKKVQVEICAHLVEPVSAENLNCAPCELAGREENLEDVESSPLSLAPWKKNTLKTTS
GTMAMAEINGKALIPPVLDTHAERLILRHSFFSPHISSSLPLRALNINGRSASEPGAREP
CACPYHHGALPVSGPAVTVQAIFRGHPETDTETPRNLGFRLHVASKAAWCVVMNFGDSSR
VQVKTYNVSEEMTVTTFHWYRKGIYMLKYVIYNGCYDTGVELGPYYVDIGHEATSVFMNS
SSVHANEVLVFAGSTLDEKYTVIMHHFPTISSYNVSFASQIQVNNNLMWHSTTIQYRMQP
ISVYTNGTVFATETDITFVSVTKETTLLEFIWYFGEDPPVKTTSRNIKKKLLIPQWYHVT
VKATNGVSSVISEPYRIQVQRGIIGTRLASATSALVNASVIFECRINVGTDISYLWSFGD
GTVELGNSTTSHIYSRXSTGEGEFMVDVLAFNNISATSLRKHLFITLKPCQPPPVKTLGP
GKVQIWSGRSQPVELTVTFEATILCDISRGLSYSWHLKNSWGWPGTLPPRCQHTHTDLHS
AQIFFWEPGNYTALAKVQVEGSFVYSNYCVEVEVRARAPVSVISEGTHLFISRTHPASVI
LRGFQSYDPDYPDAILRYYWACTVPSAQGHPCFIASSPHNLDTTTSTLIFTANSLRDSYD
QFIVSLTVSSAGRNSSEAHIFLSTHSDPEFRFIHISWVDFKGIFVNWNEEISFQAECEDC
NEITNLSYSWDLFLVNATEKKGFEVPFCRTVGLLESSKFGAASKLLELDSLSKEQNTADP
YVMTSPYSLEGLPRAQSQPNLTATEGLSVEPTDSTYQTSLFSSTVALNDASGNKESLASN
HWPSENYSFYLPDFEAYYNDIQEEIPSKGRQPARRINLPELSQSETDDKDHGDGDNLLGP
ILPSSHARPTLLVDWPKFLLSRSIFHGYTSSGTMEQRVTIKPYSLNPGETYVLQASVVSK
HHMLGKAQLYLTINQAPKDVSCQVQPSHGLEAQTIFSVFCMSGRPDFRYEFSYQIGNSSK
HTLYHGRDVQYYFALPAGEPLNNYKVLVSTEVTDGQGSRVQPCTVEVTVLPHFSGSHCPD
EDLYNSSLKYLSTLQLMGNYLEIRNYITMINRILSRWTKEVKSSSCIQWSQIQNTFISSV
CKLEFTNQEEMIDSILMLRDLIQFPNKLSFKNTVHIFKYSRMMLTQNQHSAKFVADRRSM
AELILLIAEVLEVSDEGKSRSVNYLREEGNKIISDILLGCLFLNNGSELCMSTKQMEFCV
LFHHEQQSSVQRLGSIQVHLPAVVAPLSPSATEMQRFCCIQLTLFKKNPFLERPDPSQIG
QVISVSQYNCSSRRPISRQRLRNPLTVEFRAEDGLENKRKKTTFVLNQDKMTFHKFWGLS
ENPLESLQIRIEFSKPITSTFPVMILVRYFEKPTSSDFLVKQIHLWDTSIIYIYLPAVSH
KGPNFGYLSLLDADYDRTPLYKSFAKSVNYSIHFHWLQCIFWDSREWKSKEFSPQPGTSP
DKVNCSYSHLAAFTLARRKVNASFEESDISILRRHPENLLPSIVIVIFMILYALMVIKSK
RVDHREKKKMGYIFLQENVPLDHQLYAVVIDTGFRTPSHFSAKVYIVFYGENGLSEPKEL
YCPEKPLFESNSRHTFILSAPAMLGPLQKIHLWHDSSGPSPAWFVSHVMVKELLRAQGQC
CFFRAESWLAVSQGDGSVERELTCLYQGLGFWKLLYSKFTEYLEDFHVWASVYSRPSSSH
YLHTPRLTVALALLCVYAWLSALMVAAGQEQLLPGASTTYFTLGYFQMGFLCSLLISPGA
QLLSLLFRLSKESSGDFRAEPLLPQRGEQTEAFQDTNFLRRIPDAHETSKKNPSADLSGC
IGTQKRITSLSGIGHLPPDLEVYGNDLSQLALGEKSDFGALNSHSNIAAPQVSLEALATC
WPWWGSLAWTVCGIISVACGLGTGFLGFRFGIAQCVQWMCLLTVSILCCVFLTQPFMIGL
VALAFAWKRKDDKHFFTESLHAATKYLDSELVASPKTCTPLSSFCSIPNYSSDVGKILAA
RHQARRLRWARPPSLAQLRVTRTRMRREMRTHQALRDISMYTLKLLLFLFIIYEKFSQDE
YFLNQALRNEFTRNMRHSLGSLRSVDDWWHWSLTTLLNGLYQESYSTANTSGIQPMALGG
KCYLISTLTIKQLKESPGSLCKILSSFPALLQDSFPTLNPRIEDPKILSMMDPEIQIITG
SCMDDCELSLGRTRPVVQETLMGLKTRKWIDHRTKTVSIHFSLYNPPTQLFSSVSLISEV
LPSGRLTISALVESFTIFHSNSSLQPYRIPLELVFLVLNLIQLCIELYGMTEKGVHNYFQ
RPRNWLELSIVGTCLAYHITSSHCPTVTGEVMDQLRKGLFQGFVDLSHITIWNQRTRWLQ
GILSFLLMLKFLCLLGIQKIMAFMHLSLFASGLVGVLMVVAHFHLHEFLHFTKDLTSGTS
SETFYNHLFHFQRSQRDASFGSSIYEQHSKAWCYGEGVIFILMTTVWFGMLRSSLMILAQ
NRKFFQRRFLIMHKDVPAYLWRKVLTLLGRTKMEETKVTGNHNYFLDEFEDLLDELLLKI
NGLSDCLEFSLLQQQTEYMGEASIEDNSLV
NT seq
8193 nt
NT seq
+upstream
nt +downstream
nt
atggaggctggccctgttgcttctatctacactctgaatacctgctttggggtgctgagt
tgtagaccccttgagagtcatctgcatgggagctggttggaggatgctcgtccattttct
gctcttctgcttggtactatccatcccaaagatcagctcaaaggaagctggccagttgcc
tgcagcgactatgaccaactcccaccaggagagacattggtcccaggaatggtggagtcc
tctgaagacatttttgatggcccagaaaggtgtgtccaggcttcttaccccctttccttg
cctagtgggatgactgtaacagtggaatgcagggatctccaactctgtctctgcagtcac
aggctgcctgccaagaaagtgcaagttgagatctgtgctcatcttgttgagcctgtgagt
gctgagaacctgaactgtgctccttgtgagctggcaggaagagaggagaatctggaggat
gtagagagcagcccactgtcattggctccctggaagaagaacactttgaaaacaactagt
ggaacaatggcaatggcagaaattaatggaaaagcattgattcctccagttttggatact
catgctgagagactgattctgaggcattcctttttctctccccacatctcttccagtctt
cctttgagagcactcaacattaatggccgctcagcatctgagcctggagctagagaaccc
tgtgcttgtccttatcatcatggagctctcccagtatctggtcctgctgtgactgtacag
gccatctttcgtggccacccagaaactgacacagagacgcctaggaatctgggattccga
cttcatgtggcttccaaggcagcttggtgtgtggtgatgaactttggggatagttctaga
gtgcaagtgaagacctacaatgtgtctgaggaaatgacagttaccaccttccactggtac
agaaaaggtatctatatgctcaagtatgttatttataatgggtgttatgatactggagtg
gaacttggaccttattatgtggatattggtcatgaagctacctctgtgtttatgaattcc
agcagtgtgcatgcaaatgaagttcttgtttttgctggctccaccctggatgagaaatac
actgttattatgcatcattttccaaccatttcttcatataatgtgtcctttgcttctcaa
atccaagtgaataacaacctgatgtggcacagcacgactattcagtatcggatgcagccc
atctctgtctacacaaatggaactgtgtttgccacagaaactgacattacttttgtatct
gtgaccaaggaaacaactctcctggaattcatttggtattttggagaagacccacctgtg
aaaacaacttctagaaacattaagaaaaaactcctcatcccccaatggtaccacgtgaca
gtcaaggccaccaatggtgtcagcagtgtgatctcagagccctatcgtatccaagtacag
agaggaatcattggcacccgacttgcatccgccacatcagcactggtgaatgccagtgta
atctttgagtgcagaatcaatgttggaactgacatttcttacctgtggagctttggagat
ggtaccgttgagttggggaacagtactaccagccatatctacagcaggtaaagcacaggg
gaaggagaatttatggtggatgttcttgcctttaataacatcagtgccacttcccttaga
aagcacttgttcatcacactcaagccctgccaaccacccccagtgaagactctgggacct
gggaaagtgcagatatggtctgggcggtctcaaccggtggagctaacagtgacatttgaa
gccaccattctctgtgacatctctcgaggtctttcgtacagctggcaccttaaaaattca
tggggatggccaggtaccctgcctcctagatgtcagcacacacacacagaccttcattct
gcccagatatttttttgggagcctgggaactacactgctttggccaaggttcaagtggaa
ggtagctttgtgtacagtaactactgtgtggaggtggaggtgcgggcccgggctccagtc
agtgtcatctctgaaggaacacacctgttcatctcgcggacccacccagccagcgtcatc
ctcaggggattccagtcctatgacccagactatcctgatgccattctcaggtattactgg
gcatgtactgtgccaagtgctcaggggcacccttgcttcattgcctcctctccacacaac
ctggacaccacaacttctactctgatctttacagcaaactcccttagagacagttatgac
cagtttatcgtctcactaacagtgtctagtgctggccggaactcttcagaggcgcatata
tttctatctactcactctgatcctgaattcagattcatccacatctcttgggttgacttt
aaaggtatctttgttaattggaatgaagaaatttcttttcaagctgaatgtgaagactgc
aatgaaataacaaatctttcttactcctgggatctctttttagtgaatgcaacagagaag
aagggttttgaagttcccttttgtagaacagtgggactactggaatcttccaaatttggg
gctgcttccaagctattagagttggattcactctctaaggagcaaaatacagctgaccct
tatgtaatgacctcaccctactcattggagggattgccaagggctcaaagccaacccaac
cttacagctacagaaggactctctgtggaacctacagacagcacataccagacttcttta
tttagcagcacagtggcactaaatgatgcctctgggaacaaggaatctctagcatctaac
cactggccatcagagaactattccttttacctgcctgactttgaagcctattacaatgat
attcaagaagaaattccatccaaaggaagacaaccagccaggaggatcaaccttcctgaa
ttaagccaaagtgagactgatgataaggaccacggtgatggggataacttactgggcccc
atccttccttccagtcatgccaggcccaccctcctagtggactggcccaagttcctgctc
agccgaagtattttccatggctacacgtcttctggaaccatggagcagcgtgtgacaata
aagccatactcactgaatcctggagagacatacgtcttacaagcatctgtggtttcaaag
caccacatgctggggaaagctcagctatacttgaccatcaaccaggctccaaaggatgtg
tcctgccaggtgcaaccctctcatggcctggaggcccagactatctttagtgtcttctgc
atgtcaggaagaccggactttcgttatgaatttagttatcagataggcaactcatccaaa
cacaccttgtatcatggcagagatgttcagtattactttgctttgcctgctggagagccc
ttgaataattataaagtcctggtgtccactgaggtcacagacggccaaggctctcgggta
cagccatgtactgtggaggtcactgtacttccacatttctctggctctcactgcccagat
gaagacttgtataattccagcctaaaatatctatctaccctccagttaatgggaaattac
ttagaaatcaggaattatatcacgatgattaacagaatcctaagtcgttggacaaaagaa
gtaaaaagttcatcatgtatccaatggtcgcagatacaaaatacattcatttcttctgta
tgcaaactagaatttacaaaccaggaagaaatgattgattctattcttatgttaagggac
ctcatccagtttcctaataagttaagttttaaaaatacagttcacatattcaaatacagc
cgaatgatgctcacacaaaaccaacactcagcaaagtttgtggcagacagaaggtccatg
gctgagctcatccttcttatagctgaggttttggaagtatctgatgaaggaaaatcaaga
agtgttaactatttacgagaagaaggaaacaagattatctcagatatattgttgggctgc
ctctttttgaacaacggtagtgagctctgtatgagcaccaaacagatggaattctgtgtg
ctgtttcaccatgagcaacagagctctgtgcagagactgggttctatccaggtgcattta
cctgctgtcgtggctcctctcagtccttctgcaacagaaatgcagcgtttctgctgtatc
cagctaacactcttcaagaagaatccatttctagagagaccagatcctagtcagattggt
caagttatatccgtctcccagtacaactgttctagcagaaggcccatcagcagacagcga
ctaaggaatcctttgactgtggaattcagagcagaagatggcctggaaaataagagaaag
aaaacaacatttgtattgaatcaggataaaatgacttttcataagttttggggactttct
gaaaatcccttggaatctctacagataagaatagaattttctaagcccatcacaagtact
ttcccggtcatgattctggtaaggtactttgaaaaaccaacttcctcagattttcttgta
aaacagatacacctctgggatacaagcattatatatatttatctccctgctgtttcacat
aaaggtccaaacttcgggtatttgtccttattagatgctgactatgacagaacacctcta
tacaaatcttttgctaagtcagtaaattattccatacatttccactggcttcagtgtata
ttttgggattcaagagagtggaaatctaaggaattctctccgcagccaggaacgtctcct
gataaagtgaactgcagctacagtcacctggcagcattcactctcgcaagaagaaaagta
aatgccagttttgaagagagtgacatttccatattacggagacacccagaaaatctactt
cccagcattgttattgttatttttatgatcctttatgccttgatggtcattaaaagtaag
cgagtagatcaccgtgaaaaaaagaaaatgggttatatctttttgcaagaaaatgtccct
ctcgaccaccagttgtatgctgtggtcattgacactggtttccggaccccttctcacttt
agtgcaaaggtctacattgttttctatggagaaaatggactttctgagccaaaagaactt
tattgtccagagaagcccctgtttgaaagcaattccagacatacttttattctgagcgcc
ccagcaatgctaggacccctccagaaaatccacctttggcacgacagctccggaccttct
cctgcctggtttgtgagccacgtcatggtgaaagagctgctcagggcacagggccagtgc
tgcttcttccgtgcggagagctggctagcagtgagccagggcgatggcagtgtggagcgg
gagttgacctgcctgtaccagggtcttggcttctggaagcttttatactccaaattcacc
gaatatcttgaggacttccacgtgtgggcctccgtgtacagccggccctcctccagtcac
tacctgcacacacctcgactcactgtggccttggctttgctgtgtgtgtatgcatggctt
tcggccctgatggttgctgcgggacaagaacagctcctgccgggtgccagcaccacttac
ttcactcttggatacttccagatgggtttcctatgcagcctcctcatatctccgggggcc
cagctcttgtccctgctcttcaggctcagcaaggaatccagtggggatttcagagcagag
ccacttctgccccagagaggagagcagacagaagcatttcaggacactaatttcctgaga
aggattccagatgcccacgagacatccaagaaaaacccatcagctgatctttctggctgt
attggaacccagaagaggataaccagcctcagtggcatcggccatctgcctcctgaccta
gaagtctatgggaatgaccttagtcagttggctctaggagagaagagtgattttggcgct
cttaattcacacagtaacattgctgcccctcaagttagccttgaagcactcgccacatgc
tggccttggtggggctctttagcatggactgtttgtggaataatttctgtggcctgtggc
ctggggacaggattcctgggatttagatttggaatagcacaatgtgtccagtggatgtgc
ctgctgaccgtctccatcttgtgctgtgtcttcctcacccagccattcatgattggcctt
gtggcattagcttttgcttggaaaaggaaagatgacaagcactttttcactgagtctttg
catgctgctaccaagtatctggattctgaattagttgcatcacccaagacctgcacaccc
ttatcttccttttgtagtattcccaactattcaagtgatgttggaaagatcttggctgca
agacaccaggcacggcgattgcgttgggcacgtccaccttccctggcccagctcagagtc
acacgaactaggatgagaagagagatgagaacccatcaggcactgagagatatttccatg
tataccctcaagttgctactgtttttatttataatttatgaaaaattctcccaggatgaa
tattttctcaatcaagctctcaggaatgaatttacacgaaatatgagacattccttgggt
agcctgaggagtgtggatgactggtggcactggagcctgaccacgttgctcaatggcttg
taccaagaaagctactctacagccaacacatcaggtatccagcccatggctctgggagga
aagtgttacttaataagcactttgaccattaaacagctaaaagaatctcctggtagtctc
tgcaaaattctaagttcatttccagcgcttctccaagattctttccccacacttaatccc
agaattgaagaccctaagattctctccatgatggacccagagatccagattataactggg
agttgcatggatgattgtgaactcagtctgggcaggacaaggcccgtcgttcaagagacc
ttgatgggcctcaagaccagaaaatggattgaccatagaaccaagactgtgtctatacat
ttctccctctacaacccaccaactcaactattctcaagtgtatcattgatttcagaggtt
ctcccttctgggagactcaccatctctgccctagtagagtcctttaccatcttccatagc
aactcatccctgcaaccctacagaattcctcttgagctagttttcctggtactcaacctg
attcaactctgcattgaactctatggcatgactgagaagggtgtccacaactattttcaa
agaccaaggaactggctagagttatccatagtaggaacctgccttgcctaccacataacc
tccagccactgccccactgttactggagaagtgatggaccagttacgcaaagggcttttt
caagggtttgtggaccttagtcatataaccatatggaatcagaggacaagatggctccaa
ggaatcctttccttcctcctgatgctgaaattcctttgtcttcttggcatccaaaagata
atggcatttatgcacctctcactctttgcatcagggcttgtgggtgtcctgatggtagtt
gcccacttccaccttcatgaatttctgcactttaccaaggatctgacttctggaacatct
tcagaaaccttctacaatcacctatttcattttcaaagaagtcaaagagatgcttccttt
ggatcttccatatatgagcagcattccaaggcttggtgttatggggaaggagtcattttt
atattaatgacaactgtgtggtttggaatgttgagaagttctctcatgattcttgcccaa
aacagaaagttttttcaacgcagatttcttattatgcacaaagatgtccctgcctatctg
tggagaaaggtgctcaccctcctcggaaggaccaaaatggaagagaccaaagtgactggg
aatcataattacttcctagatgaatttgaagatcttttagatgaacttttgttgaaaatc
aatggtttatcagattgtttagaattttctcttttacaacaacagactgaatatatgggg
gaagccagtatagaagataattctttggtgtaa
DBGET
integrated database retrieval system
