Suncus etruscus (white-toothed pygmy shrew): 126015550
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Entry
126015550 CDS
T09902
Symbol
COL4A2
Name
(RefSeq) collagen alpha-2(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
setr
Suncus etruscus (white-toothed pygmy shrew)
Pathway
setr04151
PI3K-Akt signaling pathway
setr04382
Cornified envelope formation
setr04510
Focal adhesion
setr04512
ECM-receptor interaction
setr04518
Integrin signaling
setr04820
Cytoskeleton in muscle cells
setr04926
Relaxin signaling pathway
setr04933
AGE-RAGE signaling pathway in diabetic complications
setr04974
Protein digestion and absorption
setr05146
Amoebiasis
setr05165
Human papillomavirus infection
setr05200
Pathways in cancer
setr05222
Small cell lung cancer
Brite
KEGG Orthology (KO) [BR:
setr00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
126015550 (COL4A2)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
126015550 (COL4A2)
04518 Integrin signaling
126015550 (COL4A2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
126015550 (COL4A2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
126015550 (COL4A2)
09150 Organismal Systems
09152 Endocrine system
04926 Relaxin signaling pathway
126015550 (COL4A2)
09154 Digestive system
04974 Protein digestion and absorption
126015550 (COL4A2)
09158 Development and regeneration
04382 Cornified envelope formation
126015550 (COL4A2)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
126015550 (COL4A2)
09162 Cancer: specific types
05222 Small cell lung cancer
126015550 (COL4A2)
09172 Infectious disease: viral
05165 Human papillomavirus infection
126015550 (COL4A2)
09174 Infectious disease: parasitic
05146 Amoebiasis
126015550 (COL4A2)
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
126015550 (COL4A2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
setr04147
]
126015550 (COL4A2)
00536 Glycosaminoglycan binding proteins [BR:
setr00536
]
126015550 (COL4A2)
Exosome [BR:
setr04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
126015550 (COL4A2)
Glycosaminoglycan binding proteins [BR:
setr00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
126015550 (COL4A2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
126015550
NCBI-ProteinID:
XP_049634047
LinkDB
All DBs
Position
8:123594579..123675676
Genome browser
AA seq
1707 aa
AA seq
DB search
MDPGARLRPARQRWLLVAVTVGLLAQSALAGVKKYDVPCGGRDCSGGCQCYPEKGGRGQP
GTVGTQGFNGPPGLQGFPGLQGQKGEKGERGRPGIIGPKGEVGGRGVAGFPGADGIPGHP
GQGGPRGRPGFDGCNGTRGDAGQQGPPGSGGFPGQPGPQGPKGQKGEPYALSPRERDLYR
GEPGEPGLVGFQGPPGRPGFMGPMGPVGAPGRPGPPGPPGPKGEQGNRGLGFYGVKGEKG
EMGLPGPNGVPSEVHHAVGPTKEVLHREQYKGEKGSEGDQGKPGYGIKGEDGIVGFPGER
GLPGYPGEKGDSGLRGTKGRDGYQGPDGRPGPRGDPGIQGPPGPPAYSPHPSLAKGMKGE
PGFPGAHGEPGSRGQPGDPGLPGLPGTPLGEDDTKRGFPGEMGPKGFAGEPGIPARYPGR
PGTDGRPGLQGLPGAPGAPGPDGFLFGLKGTEGGVGYPGPSGFPGTRGQKGWKGEAGDCS
CGDEFTRGLPGLPGHKGFPGTSGEPGRKGDAGEPGAHGIPGFSGFKGAPGETGAPGPKGA
KGDSRTITTKGDRGQPGVPGVPGLKGMDGFPGRDGLGGFPGLPGPPGDGPKGPPGDVGQN
GIPGTKGLPGERGPPGLGLPGPKGERGFPGDPGATGIPGFPGPPGLPGSPGQLDCEDDGV
KRPIGGQGQASVQPGCVGGPKGLPGPPGPPGSPGIKGLPGIQGLSGADGTPGLKGLPGDP
GREGFPGPPGFVGPRGSKGLVGRPGPDGLPGPSGVPGPAGPPGDKGLPGEALGAHPGPRG
DAGLPGHPGLKGVPGERGPPGFTGSQGMPGMPGLKGPSGFPGPTGQPGLPGPPGQHGFPG
VPGRAGPLGLPGAPGFGGLPGERGEPGDVGMPGPVGIKGVSGDRGSTGAVGEQGQPGPSG
FKGMAGMPGTPGLKGVKGSPGMDGFQGMPGFPGRPGIPGSKGETGFFGAPGLKGLAGVPG
AKGVRGEPGPPGPPPFIQPGMKDIKGEKGDEGPMGLKGFLGVKGGTGMPGVPGLSGIPGM
PGKPGYVKGIKGDIGVPGLPGSPGFPGVPGSPGIIGFPGFTGSRGEKGIQGREGLFGEAG
PTGDFGDIGDTINLPGTPGLKGDRGTSGIPGRKGFFGQKGAAGDIGFPGITGMAGVQGPP
GLKGQTGFPGLTGLTGPQGEPGRAGVPGEKGDFGWPGTPGLPGFPGPRGIGGLNGLPGTK
GFPGSPGSEGHGDPGFPGPVGERGEPGEPNTFPGPAGDPGQKGERGIPGNRGPAGSPGHR
GFPGITPQSNISGAPGDVGAPGIFGMEGYRGPPGPPGSAALPGSKGDEGAPGNPGTPGSK
GWGGEPGPQGRPGVFGLPGEKGPRGEPGFMGNTGAVGRTGDRGPAGPKGDRGRPGPPGSL
GSPGIVGIPQKIVSEPGPMGPQGRRGPPGAQGDIGPQGPPGDPGFRGAPGKPGAQGRGGV
SAMPGFRGDPGPMGNQGPIGQEGEPGRPGTPGLPGMPGRSVSIGYLLVKHSQTEQEPMCP
VGMNKLWSGYSLLYFEGQERAFNQDLGLAGSCLARFSTMPFLYCNPGDICYYASRNDKSY
WLSTTAPLPMMPVSEDDIKPYISRCSVCEAPAVAIAVHSQDVSIPHCPSGWRSLWIGYSF
LMHTAAGDEGGGQSLVSPGSCLEDFRATPFIECNGARGTCHYYANKYSFWLTTIAEQNFQ
PSPQADTLKAGLIRTHISRCQVCMKNL
NT seq
5124 nt
NT seq
+upstream
nt +downstream
nt
atggacccaggcgcacggttgcgccctgcccggcagaggtggctgctggtggccgtgacc
gtgggactgctggctcagagcgccctggcgggcgtgaagaagtacgacgtgccatgtggc
ggcagagactgcagcgggggctgccagtgctaccctgagaaaggaggacggggccagccg
ggaacagtgggcacccagggcttcaacggacctccagggctgcaaggcttcccgggtctg
caaggccaaaaaggcgagaagggcgagcgcggccgacccgggatcatcggacccaaaggc
gaagtgggtggcagaggcgttgcaggcttcccaggggctgacgggatacccggacaccca
ggacagggcggcccccgagggagacccggctttgacggctgtaatggcacccgaggagat
gcaggccagcagggaccacctggctccgggggattccctggccaacccggaccccaagga
ccgaaagggcagaaaggcgagccttatgcactgtccccccgagaacgtgacctctacagg
ggcgaacccggtgaaccaggactggtcggcttccagggtccccctggccgcccggggttc
atggggccaatggggccagtcggagctccagggagaccgggcccacctggacctcctgga
cccaaaggggagcagggcaatcgcggactcggcttctacggagtaaagggcgagaagggc
gagatgggcctgccgggacccaacggggttccgtctgaggtgcaccacgccgtgggcccc
accaaggaggtgctgcaccgggaacagtacaagggcgagaaggggagcgagggagaccaa
ggcaaaccgggttatggcataaagggtgaagacggcatcgtgggattcccaggagagcgg
ggcctgcctggatatcctggagagaagggtgactcaggacttaggggaaccaaaggtcga
gatggctaccaaggtcctgatggccgcccgggccccaggggagaccctggcatccaaggc
ccaccagggccccccgcatactctccgcatccatccctcgccaaaggcatgaaaggtgaa
cccggatttcccggagcccacggagagccaggaagccgcggtcagccaggagaccctggt
ctccccggcctgccaggcacccctctgggagaagatgataccaagaggggcttccccgga
gagatggggcccaaaggcttcgccggagaacccggcatccccgcacggtaccctggacgc
cccggaactgatggaaggccagggctgcagggactccctggggctcctggggcccccgga
ccagacggtttcctgtttggactgaaaggaacagaaggaggtgtggggtaccccggacca
tcggggttccccgggacccgaggacagaagggatggaaaggggaggccggagactgcagc
tgtggtgacgagtttacccgagggctaccgggcctgccaggacacaaaggcttcccaggc
accagcggggagccgggacggaaaggagacgcaggcgagcctggggctcatggcatcccc
ggcttttcagggttcaagggtgcccctggggagactggagcccctgggcccaaaggagca
aaaggagactccagaaccatcaccaccaaaggtgatcggggacagccaggagttccaggt
gtgccaggcctaaagggcatggatggcttcccaggccgtgatggactcggtggcttccca
ggtcttccaggccctccgggggatggcccgaaaggccctcctggagacgtaggccagaat
gggattcccggcactaagggcctccctggagaaaggggccctccaggcctgggcctgcca
ggccccaaaggcgagcgcggcttccctggagatccaggggctaccggtattccgggcttt
cccggcccccctggcctgcctggctccccaggacagctcgactgtgaagatgacggcgtg
aagaggcccatcggagggcaggggcaggcatctgtgcagccaggctgtgttggaggaccc
aagggtctccctgggcccccaggccctcctggatccccaggaatcaaagggctgcctggc
attcaaggcctctcgggagccgatggaaccccaggtctcaagggtctccccggagatccc
ggccgtgaagggttcccaggtcctccaggcttcgtgggaccccgtggatccaaaggcctc
gtcggtcggccaggccctgatggcctccccgggcccagtggtgtgccagggccggccggc
ccccctggagacaagggtcttcctggagaagccctgggcgcccatcctgggccccgggga
gatgctggcctacccggccaccccggcctgaagggcgtccctggagagagaggcccgccg
ggattcacggggagccaaggcatgcctggaatgccaggactcaagggcccctcgggcttc
ccaggaccgactggccagcccgggctgccaggcccaccaggacagcatggcttccccgga
gtgccaggccgagctggccccttggggctgccaggcgccccaggctttgggggcctacct
ggggagagaggtgaacctggggacgttggcatgccagggcctgtgggcataaaaggagtc
tctggagacagagggagcacaggcgccgtgggggagcaaggccagccaggcccctccgga
ttcaaaggcatggcagggatgccaggcacaccagggctgaaaggggtcaagggatccccc
gggatggacggcttccagggcatgcccggcttcccggggagacccggcataccaggcagc
aaaggagaaaccggcttctttggggcgcccggactgaagggcctggccggggtgcccggg
gcgaaaggtgttcgcggagagcccggacccccaggaccaccccctttcatccagcctgga
atgaaggatatcaaaggggagaaaggcgacgagggccccatggggctgaaggggttcctg
ggcgtgaaaggaggcaccgggatgccaggagtgcccgggctgtcagggatccctggcatg
ccgggaaagcccggctacgtcaaaggaatcaagggggacatcggtgtacccggtctgcct
ggctctcccggcttccccggagtgcccgggtcccctgggatcatcggcttcccagggttc
acaggaagtaggggtgaaaaggggatccaggggagagagggtctgtttggggaggccggc
cccacaggcgactttggtgacatcggagacaccatcaacctgccgggaacccccggcctg
aagggggatcgtggcacctcggggattccaggtcggaagggattcttcggtcagaagggt
gcggcgggcgacattggcttcccgggaatcaccggcatggcaggcgttcaagggcccccg
gggctgaaaggacaaacaggatttccggggctcacgggcctcacggggcctcagggtgag
cccggacgtgctggagtgccgggagagaaaggagatttcggctggccagggactcccggc
ttgccaggcttcccaggccccagaggcatcggaggactcaacggcttgccaggcaccaaa
ggtttcccaggatccccaggatctgaaggccacggagaccctggcttccccggccctgtg
ggagagaggggggagcccggagagcccaacacctttccaggccctgctggagacccagga
cagaagggggagcgaggaataccggggaaccgcggcccagctggaagccccggacacagg
ggtttccccggcatcaccccccaatccaacatctctggggcacctggtgacgtcggggcc
cctggcatcttcggcatggaaggttatcggggccccccgggcccacctggatctgctgca
cttcctggaagcaaaggagatgagggggcccccgggaacccaggaacccccggatccaaa
ggctggggtggagagcctggcccccagggccggcccggtgtgtttggcctccctggagag
aaaggcccccgtggcgaaccgggctttatggggaacacaggagctgtgggaaggaccggg
gaccgaggtcctgcgggccccaaaggtgaccgcggaaggcctgggcctccagggtccttg
ggttcccccgggattgtggggattccccagaagatcgtctctgagccaggacccatgggt
cctcagggtaggcgaggaccgcccggagcacagggcgatataggaccgcagggaccccca
ggagacccagggttccgaggggctcccgggaagcctggcgcacagggacgaggaggcgtg
tctgccatgcccggattccgcggtgacccggggcccatgggcaaccaggggcctattggc
caggaaggagagccgggccgccccgggaccccaggcctgccgggcatgccaggccgaagc
gtgagcatcggctacctgctggtgaagcacagccagacggagcaggagcctatgtgcccc
gtgggcatgaacaagctgtggagcggatacagcctgttgtactttgagggccaggagcgg
gcgttcaaccaggacctgggtctagcaggctcctgcctggcccgcttcagcactatgccc
ttcctgtactgcaacccgggcgacatctgctattacgccagccgcaacgacaagtcctac
tggctgtcgaccaccgcccccctgcccatgatgcccgtctccgaggacgacatcaagccc
tacatcagccgctgctccgtatgcgaggccccggccgtggccattgcggtgcacagccag
gacgtgtccattccccactgcccgtcggggtggcgtagcctgtggattggctactccttc
ctcatgcacacagcggccggtgacgaagggggcggccagtcactggtgtcgccgggcagc
tgcctggaggacttccgtgccacgcccttcatcgagtgcaacggtgcccggggcacctgc
cactactacgccaacaagtacagcttctggctcaccaccatcgccgagcagaacttccag
ccttcgcctcaggcggacacgctcaaggcggggctcatccgcacgcacatcagccgctgc
caggtgtgcatgaagaacctatga
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integrated database retrieval system
