Suncus etruscus (white-toothed pygmy shrew): 126015551
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Entry
126015551 CDS
T09902
Symbol
COL4A1
Name
(RefSeq) collagen alpha-1(IV) chain
KO
K06237
collagen type IV alpha
Organism
setr
Suncus etruscus (white-toothed pygmy shrew)
Pathway
setr04151
PI3K-Akt signaling pathway
setr04510
Focal adhesion
setr04512
ECM-receptor interaction
setr04820
Cytoskeleton in muscle cells
setr04926
Relaxin signaling pathway
setr04933
AGE-RAGE signaling pathway in diabetic complications
setr04974
Protein digestion and absorption
setr05146
Amoebiasis
setr05165
Human papillomavirus infection
setr05200
Pathways in cancer
setr05222
Small cell lung cancer
Brite
KEGG Orthology (KO) [BR:
setr00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
126015551 (COL4A1)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
126015551 (COL4A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
126015551 (COL4A1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
126015551 (COL4A1)
09150 Organismal Systems
09152 Endocrine system
04926 Relaxin signaling pathway
126015551 (COL4A1)
09154 Digestive system
04974 Protein digestion and absorption
126015551 (COL4A1)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
126015551 (COL4A1)
09162 Cancer: specific types
05222 Small cell lung cancer
126015551 (COL4A1)
09172 Infectious disease: viral
05165 Human papillomavirus infection
126015551 (COL4A1)
09174 Infectious disease: parasitic
05146 Amoebiasis
126015551 (COL4A1)
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
126015551 (COL4A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
setr04147
]
126015551 (COL4A1)
00536 Glycosaminoglycan binding proteins [BR:
setr00536
]
126015551 (COL4A1)
Exosome [BR:
setr04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
126015551 (COL4A1)
Glycosaminoglycan binding proteins [BR:
setr00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
126015551 (COL4A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
126015551
NCBI-ProteinID:
XP_049634049
LinkDB
All DBs
Position
8:complement(123523068..123594074)
Genome browser
AA seq
1672 aa
AA seq
DB search
MGPRLGLWLLLLPPWTLLIPQRQGLAAAKGAYGCAGSGCGKCDCQGVKGQKGERGLPGLQ
GVIGFPGMQGPEGPVGPPGQKGDPGEPGLPGTKGTRGAPGMAGFPGTPGLPGIPGQDGPP
GPQGIPGCNGTKGERGPLGPPGLPGFMGNPGPPGIPGMKGDPGEILGHIPGTLLKGERGY
PGPPGTPGSPGLPGLQGPVGPPGFQGPPGPPGPPGPPGEKGQMGLSFQGPKGEKGDQGVT
GPPGVPGQAQVKEKGEIATKGDKGEKGDPGFQGIPGFGEKGEPGKPGPRGKPGKDGEKGE
RGSPGFPGESGFPGLPGREGQKGDKGDAGPPGPPGIVIGTGPLGEKGEQGYPGTPGLRGE
PGPKGFPGQRGLPGPPGVPIPGHVGAPGIPGDRGEKGDQGPPGVSLPGPSGKDGLQGPPG
PPGPPGQPGHTNGIVECQPGPRGDQGPPGAPGQPGLSGEVGEKGQKGEGCLTCDLTGLRG
PPGPQGPPGEIGFPGQPGAKGDRGAPGRNGLEGLPGPPGVPGLMGQPGAKGEPGEIYLDM
RLKGDKGDPGFPGQPGMPGRAGSPGRDGQPGLPGPKGSPGTVGLKGERGPPGGVGFPGSR
GDTGPPGLPGFGPIGPIGDKGQAGFPGNPGAPGLPGPKGEAGKVVPLPGPPGSAGLPGSP
GFQGPQGDRGFPGTPGRPGVPGEKGSVGQPGIGFPGPPGPKGVDGLPGEAGPPGLPGRQG
FNGLPGSPGVPGPKGEPGVGQPGLKGLPGLPGIPGTPGEKGNIGGPGVPGENGAIGPPGL
QGNRGDPGPPGLPGPKGSPGVPGTGPPGAMGPPGGQGPPGSSGPPGVKGEKGFPGFPGPG
TQGPKGDKGSQGLPGLTGQLGLPGLPGQQGTPGLPGFPGAKGEMGVMGTPGQPGPPGSSG
SPGLPGLKGDLGLPGSSGPRGEPGFKGDKGDTGLPGKPGTMDHLDMGTMKGQKGDQGEKG
QIGPTGDKGSRGDPGTPGVPGKDGLIGQPGQPGPKGDPGIGGSPGAPGLPGPKGAIGGMG
MPGSPGEKGVPGIPGPQGMPGVPGEKGTKGEKGQAGLPGVGIPGRPGDKGDQGLAGFPGS
PGEKGEKGSAGIPGMPGSPGPKGLPGTAGYPGSPGLPGEKGDKGLPGLDGIQGVKGEAGV
PGRPGPTGPAGQKGEPGSDGFPGSAGEKGEPGLPGRGMPGFPGSKGEKGSKGEVGIPGLA
GSPGIPGPKGEQGFMGPPGPQGQPGLPGAPGHAMEGPKGDRGPQGQPGLPGMPGPMGPPG
LPGLDGLKGDRGNPGWPGTPGAPGPKGDPGFQGMPGIGGSPGLTGSKGDIGPPGVPGFQG
QKGLPGLQGLKGEPGDQGFPGEKGLPGPPGPPGPYDVIKGEPGIPGPEGPAGLKGLQGPP
GPKGQQGVTGSVGLPGSPGSPGFDGAPGLKGEPGPFGPTGPRGFPGPPGPDGLPGSMGPP
GTPSVDHGFLVTRHSQTVDEPQCPPGTKILYHGYSLLYVQGNERAHGQDLGTAGSCLRKF
STMPFLFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPITGENIRPFISRCSVCEAPAMV
MAVHSQTIQIPQCPTGWSSLWIGYSFVMHTSAGAEGAGQALASPGSCLEEFRSSPFIECH
GRGTCNYFANSYSFWLATIERNEMFKKPTPSTLKAGELRTHISRCQVCMRRT
NT seq
5019 nt
NT seq
+upstream
nt +downstream
nt
atggggccccggctcggcctctggctgctgctgctgccgccctggacgctgctgatcccc
cagcgccagggcctcgccgccgccaagggtgcttatggctgtgctggctccggctgtggg
aaatgtgactgtcaaggcgtgaagggacagaagggtgagaggggcctccccggattacaa
ggtgtcataggatttcctggcatgcagggccccgaagggccagtgggacccccaggacag
aagggtgatccaggagaacccggacttcccggaaccaaagggaccaggggtgcccctggc
atggctggattccccggaaccccaggccttccgggcatccctggtcaagatggcccaccc
ggaccccagggaatcccaggatgtaatgggacaaagggtgaacgaggacccctgggccct
ccaggtctgcccggcttcatggggaaccctggacccccgggtatccccggaatgaagggg
gatccaggagaaattctgggccacattcccgggacgctgttgaagggcgagcgtggctat
ccaggaccccccggaacacctggctctccaggactcccaggactacaaggacccgtgggc
ccacctggatttcaaggaccccccggtcccccaggcccccctggcccgcccggtgagaag
ggtcagatgggcctcagcttccaaggaccaaaaggggagaagggagaccaaggagtgaca
ggacccccaggggtccctggccaggctcaggtgaaggagaagggagagattgctactaaa
ggagataagggtgaaaaaggcgatcctgggttccagggcataccaggcttcggggaaaaa
ggtgaacctggaaaaccagggccccgaggcaagccaggaaaggatggcgagaaaggggag
cgagggtcaccgggatttcctggagaaagcggcttcccgggactaccaggccgagaggga
cagaagggagacaaaggcgacgctggacccccaggcccccctggaattgtcattggcacc
gggccgctgggcgagaaaggagaacagggctaccctgggactcctgggcttagaggtgaa
ccaggacccaaaggcttcccaggacagcgaggactccctggccccccaggcgtccccatc
ccaggccacgttggcgctcccggcatccctggagaccgaggcgagaaaggcgatcagggg
ccgccgggcgtgtcgttaccaggaccaagtggaaaggacgggctccagggtcctcctggg
ccccccggccccccagggcagccaggccacaccaatggaatcgtagagtgccagcctgga
ccacggggcgatcagggcccccctggagccccgggccagcccgggctgagtggtgaagtg
ggtgagaaaggtcagaaaggagagggctgcctgacttgtgacctcacaggacttcgggga
ccccctgggccacagggacccccaggagaaatcggtttcccgggacagccaggagccaag
ggtgatcgcggagcacctggccgaaacggtctggaaggcctgcctggacccccaggtgta
cctgggctgatgggccagcctggagccaagggagaacccggcgagatttatctagacatg
cggctcaaaggcgacaagggagaccccggattcccaggacagcctggcatgccgggcaga
gcagggtctccgggaagagacggccagccgggactccccggccccaaaggctccccgggc
accgtgggtctgaaaggcgagcgtggccctccaggaggcgtgggcttccccggcagccgt
ggggacaccggccccccaggcctcccaggctttggtcccatcggccccatcggtgacaaa
ggacaagccggcttcccggggaaccctggtgccccggggctgccaggtcccaagggggaa
gcaggaaaagtggtccccttgcctggcccccctggatcagctgggctccctggctctccc
ggcttccaaggaccccaaggtgaccggggtttccccgggaccccgggaagaccgggcgtt
cctggagagaaaggctccgttggtcagcctggcatcggcttccctggacctccagggccc
aaaggcgtggatggcttacctggagaagcaggccccccagggctgcctggccgccagggc
ttcaacggcttacctggtagtcctggtgttccagggcccaagggggagcccggggtagga
cagcctggcctcaaaggactgcccggccttcctggcatccccgggacgcccggagagaag
gggaacattgggggacctggagtccccggcgagaatggagccatcggcccccctggcctc
cagggtaaccgaggtgacccaggacctcccggattaccgggacccaaaggctctcccgga
gtccctggcactggcccccctggagcgatgggcccccctggaggacagggacccccggga
tcctcaggccctcctggagtcaaaggcgagaaaggatttccggggttccccggccccggc
acgcagggccccaaaggcgacaaaggatctcaggggctgcccggtctcaccggccagctg
gggctccctggccttcctggccagcagggcacacctgggcttcctggatttccaggcgcc
aaaggagagatgggtgtcatggggaccccggggcagccgggcccgccgggctcatcgggc
tccccaggactgcccggcctgaaaggggacttgggcttgcctggctcttcggggcccagg
ggagaacctggcttcaaaggggataaaggtgacaccggtctccccgggaagcctggcacc
atggaccacttggatatgggcaccatgaaggggcagaagggcgaccagggtgagaaagga
caaatcggacccactggtgacaaggggtcccggggcgacccggggactcccggagtccca
ggaaaggatggcctgatcggtcagccagggcagccaggccctaaaggtgaccctggcatc
ggtgggagccctggagccccaggacttcctggccccaaaggagcgattggcggaatggga
atgccaggatctcctggagagaagggggtgcccgggatccccggccctcagggcatgccc
ggcgtgcctggggagaagggtaccaagggcgagaagggccaggcagggctgcctggtgtc
ggcattccagggcggcctggggacaagggagaccagggcttggctggcttcccaggaagt
cccggcgagaagggagagaaaggaagtgctggtatcccaggaatgcctggttcccccggg
cccaagggcctgccgggcacggccggctacccagggagccccgggctgcccggggagaaa
ggagacaagggcctcccaggcctggatggcatccaaggcgtgaaaggagaagcaggtgtc
cctggcagacccggccccactggccccgccggccagaagggtgaacctggcagtgacgga
tttccagggtcagcgggggagaagggcgagccaggccttcccggaagaggcatgccaggc
ttccccggctccaagggcgagaaaggttctaaaggcgaagtgggcatcccaggactggcc
gggagtccaggaatccccggaccgaagggagagcaaggattcatgggccccccagggccc
caagggcagccaggactccccggagctccaggccatgccatggaaggtcccaaaggggac
cgtggcccccagggacagcctggactgccaggcatgccgggtcccatgggtcctcctgga
ctccctggactggacggcctgaaaggggacagaggaaaccctggctggcctggcacaccc
ggtgccccaggacccaaaggagacccaggattccagggcatgccgggtatcggcggctct
cccgggctcacaggctctaagggagacattgggcctcccggtgtcccagggttccaaggt
cagaaggggcttcccggcctccagggactcaagggcgagcccggagatcaaggcttcccc
ggagaaaaaggtctccctgggccgcccggcccacctggcccctacgacgtcatcaaaggg
gagccaggaatccctggccccgagggtcctgctggtctgaaagggcttcaaggaccgcct
ggccccaaaggacagcaaggtgtcactgggtcagtaggcttgcctggatcaccgggcagc
cctgggtttgatggcgcccccggactgaaaggagagccaggacccttcgggcccactggt
ccacgagggtttccaggccctcctggccctgatgggctgccgggctccatgggcccccca
gggaccccgtcggtggaccatggcttcctggtaaccagacacagccagacggtggacgag
cctcagtgccctccgggcacgaagatcctctaccacggctactctctgctctatgtgcag
ggcaacgagcgtgcccatgggcaggacctgggcactgcggggagctgtctacgcaagttc
agcaccatgcccttcctcttctgcaacatcaacaacgtctgcaacttcgcgtcccgcaat
gactattcctactggctgtccacgcctgagcccatgcccatgtctatggcacccatcacc
ggtgagaacatccgcccattcatcagcaggtgctcagtgtgcgaggccccagccatggtg
atggccgtgcacagtcagaccatccagatcccgcagtgcccgactggctggtcctcgctc
tggatcggctactcctttgtcatgcacaccagtgcgggtgctgagggtgccggccaggcg
ctggcgtcgcccggctcgtgcctggaggagttccgcagctcgcctttcatcgagtgccac
ggcaggggcacctgcaactacttcgccaactcctacagcttctggctcgccaccatcgag
aggaatgagatgttcaagaaacccacgccatccacactcaaggcgggagagctgcgcacg
cacatcagccgctgtcaggtgtgcatgaggaggacttag
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