Suncus etruscus (white-toothed pygmy shrew): 126015569
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Entry
126015569 CDS
T09902
Symbol
UPF3A
Name
(RefSeq) regulator of nonsense transcripts 3A isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
setr
Suncus etruscus (white-toothed pygmy shrew)
Pathway
setr03013
Nucleocytoplasmic transport
setr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
setr00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
126015569 (UPF3A)
03015 mRNA surveillance pathway
126015569 (UPF3A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
setr03019
]
126015569 (UPF3A)
Messenger RNA biogenesis [BR:
setr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
126015569 (UPF3A)
mRNA cycle factors
P-body specific factors
126015569 (UPF3A)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
Motif
Other DBs
NCBI-GeneID:
126015569
NCBI-ProteinID:
XP_049634083
LinkDB
All DBs
Position
8:124713775..124732734
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AA seq
445 aa
AA seq
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MLRADASPGAGKPREEKRPGLSKVVIRRLPPNLTKQQLEEQLHPLPAHDYFEFCAADCSL
YPHLYSRAYINFRDPDDILLFRDRFDGFIFIDSKGLEYPAVVEFAPFQKIVKKKLRKKDA
KIGSIDDDPEYKKFLETYCIEEEKTSISPETLLGDIEAKTRELIGRRTTPLLEYIKSRKL
EKQRIREEKREERRRRELERKRLREEEKKKRREEERCKRKEADKQKKPEKEVRIKLLKKT
EKGEELRPEKARERDEEADAGDGKQECCPGYAALRPQPHKRSLEELQEKSQNDNDKEWRD
LERRLVEKESESRYHLDDSKKPRAHYDFDKVSRKNEEEPRLGKGLFFDRGKKEIQEDGAS
VETLERPEREKSKDGRASKQELMGSKVLFFICIISLTSLYFLHRHSFTKPAGQYFLGIFK
YRSISLKMCTLSSFTPLVIFGSRQL
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
atgctgcgggccgacgcgtcgcccggcgccgggaagcctcgcgaggagaagaggccgggg
ctgagcaaggtggtgatccggcggctgccgcccaacctgaccaagcagcagctggaggag
cagctgcacccgctgcccgcgcacgactacttcgagttctgcgccgccgactgcagtctt
tatcctcatctctactcaagagcatatattaattttagagatcctgatgacatccttctt
tttagagatcgttttgatggctttatcttcattgacagtaaaggtctagaatatcctgca
gtggtagagtttgctccattccagaaaatagttaaaaagaaactaaggaaaaaagatgcc
aaaattggaagcattgatgatgatccagaatataagaagtttctggaaacctactgcata
gaagaagagaaaactagtatcagtcccgaaactcttttgggagacatagaggcaaagaca
agagaacttattggtagaagaaccactcctcttttggaatatattaaaagtaggaaatta
gaaaagcagagaattcgagaagagaagcgagaagagaggagaagaagggagttggaaagg
aaacgcttacgtgaagaagaaaaaaagaagagaagagaagaagaaagatgtaaaaggaaa
gaggcagacaagcagaagaagcctgagaaagaagtaaggattaagctacttaaaaaaaca
gaaaagggagaggaactccgccctgagaaagccagagaaagagatgaggaagcggatgct
ggagatgggaagcaggaatgctgccctggctatgcagccctgaggccccagccccacaag
agatctctggaggagctccaggaaaagtcacaaaatgacaatgataaagaatggagggat
ctggagagaagacttgtagaaaaagaatcggaatcaaggtaccacttggatgacagtaaa
aagcctagagctcactatgactttgacaaagtttctagaaaaaatgaagaagagccaaga
ttgggaaaaggattgttttttgacagagggaagaaggagattcaagaagatggtgcttct
gtggagactttggagcgaccagagagagaaaaaagtaaagatggcagggcatccaaacag
gaactcatgggaagcaaggttctcttcttcatttgcataatatctcttaccagtctgtat
tttctacatagacactcctttactaagccagcagggcagtactttctaggtatctttaag
tacaggagtatatccctaaaaatgtgcactttatctagtttcaccccactggtcatcttc
gggagcaggcagctctga
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