Suncus etruscus (white-toothed pygmy shrew): 126015623
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Entry
126015623 CDS
T09902
Symbol
DDX6
Name
(RefSeq) LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase DDX6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
setr
Suncus etruscus (white-toothed pygmy shrew)
Pathway
setr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
setr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
126015623 (DDX6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
setr03019
]
126015623 (DDX6)
03036 Chromosome and associated proteins [BR:
setr03036
]
126015623 (DDX6)
Enzymes [BR:
setr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
126015623 (DDX6)
Messenger RNA biogenesis [BR:
setr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
126015623 (DDX6)
mRNA degradation factors
5'-3' decay
Decapping complex
126015623 (DDX6)
Chromosome and associated proteins [BR:
setr03036
]
Eukaryotic type
Gene silencing
piRNA pathway
126015623 (DDX6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
126015623
NCBI-ProteinID:
XP_049634162
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All DBs
Position
8:15144017..15182002
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AA seq
482 aa
AA seq
DB search
MSTARTENPVIMGLSSQNGQLRGPVKPSGGPGGGGTPTQQQMNQLKNTNTMNNGTQQAQS
LTSTIKPGDDWKKTLKLPPKDLRIKTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSP
IQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVS
QICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQ
MIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLQKPYEINLM
EELTLKGVTQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSC
FYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGTDIHAVNVVINFDFPKLAETYLHR
IVRSGRFGHLGLAINLITYDDRFNLKSIEEQLGTEIKPIPSNIDKSLYVAEYHSEPVEDE
KP
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgagcacggccagaacagagaaccctgttataatgggtctttccagtcaaaatggtcag
ctgaggggcccggtgaagcccagtggtggccccggaggagggggtacacctacacagcaa
cagatgaaccagctgaaaaacaccaacacaatgaataacggcactcagcaagcacagagc
ctgacctccacaattaaacctggtgatgactggaaaaagactttaaaactccctccaaag
gatctaagaatcaaaacttcggatgtgacctccacaaaaggaaatgagtttgaagattac
tgtttgaaacgggagttactgatgggaattttcgaaatgggctgggaaaagccatctcct
attcaggaggagagtattcccattgcattatctggtagggatatattagctagagcaaaa
aatggaacaggcaagagcggtgcctacctcattcccttacttgaacggctagacctgaag
aaggataatatacaagcaatggtgattgttcccactagagaacttgctctacaggtcagt
caaatctgcatccaggtcagcaagcatatgggaggggccaaagtgatggcgaccaccgga
ggaaccaatttacgtgatgacataatgagactggatgacacagtgcacgtggtgatagct
acgcctggaaggatcctggatcttatcaagaaaggagtagcaaaagttgatcatgtccag
atgatagtgttggatgaggctgataagttgctatcacaggattttgtgcagataatggag
gatattattctcacgctacctaaaaacagacagattttattatattctgctacttttcct
cttagtgtacagaagttcatgaattcccatttgcagaaaccctatgagattaacctgatg
gaggagctaacattaaagggagtaacccagtactatgcttacgtaactgagcgccagaaa
gtacactgcctcaacacgctcttctccaggcttcagataaatcaatcgatcattttctgt
aactcctctcagcgagttgaattactggccaagaagatttctcaactgggttattcttgc
ttctatatccatgctaaaatgaggcaggaacatcgaaatcgtgtgtttcatgatttccga
aatggcttatgccgcaatcttgtttgcactgatttgtttacccgaggtactgatatccac
gctgtgaatgtggtgataaactttgacttcccaaagctggcagagacctatctccaccgt
attgtaagatcaggtcgttttggtcatcttggcttagccatcaacttgatcacatatgat
gatcgattcaacctaaaaagtattgaggagcagctgggaacagaaattaaacctatccca
agcaacattgacaagagcctctatgtggcagaataccacagcgagcctgtagaagacgag
aaaccttaa
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