Suncus etruscus (white-toothed pygmy shrew): 126015971
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Entry
126015971 CDS
T09902
Symbol
PCDH20
Name
(RefSeq) LOW QUALITY PROTEIN: protocadherin-20
KO
K16498
protocadherin delta 1
Organism
setr
Suncus etruscus (white-toothed pygmy shrew)
Pathway
setr03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
setr00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
126015971 (PCDH20)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
setr01009
]
126015971 (PCDH20)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
setr04515
]
126015971 (PCDH20)
Protein phosphatases and associated proteins [BR:
setr01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
126015971 (PCDH20)
Cell adhesion molecules [BR:
setr04515
]
Cadherins
Protocadherins
126015971 (PCDH20)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_CELSR2_9th
RTBV_P12
Motif
Other DBs
NCBI-GeneID:
126015971
NCBI-ProteinID:
XP_049634455
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All DBs
Position
8:complement(79701544..79821345)
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AA seq
1333 aa
AA seq
DB search
MHRRTAILGRFWFLLVTNAASLAESTCNFSTVSASAVSSAWLLPSASGTPYQPLVGSAYP
YQQINTGMLSGVSVQNQTFTSTASYHPLLFSGILLEVLKIRPLPVEASLWTVTDQNTAVS
SMSVAAQYPNISHTTSTVPLYTYPTFQADLSRGHHLRGPHHTQRPGSPAPKCLIPRPPPL
DFYNSVSASAHHRIKISSPDLHQILTSFDPLDQEKQVASENKGLGKSQKFYEDDVALESD
TDSSSSLADITTLEEINCPLTLRVLAKTVDQNNSLQEIDTKQNITIATTCKVKLIPLPFF
ASEKPPPVSRRRPRPQHLAASVPAASQPTRPGSSQCPLNQCCEDEKTTEKDRSYITSSEE
EFVSFSIGRRKQNLPRECLLGPGNAHSSRALALSWRPATWHPGLDMGRLNRPRSSSSTSP
RNLPHLFLFFLFVGPFNCLASYSRATELLYSLNEGLPAGVLIGSLAQDLRLVPPAPTGRN
KPQWQPPERLGAELNPPLSFSLASRGLSGQYVTLDNRSGELHTSTQEIDREALCLEGGAG
AAWGASISISSSPSQDQCLLLLDVLVLPQEYFRFVKVKIAIRDINDNAPQFPVSQISVWV
PENAPINTRLAIEHPATDPDVGTNGVQTYRLLDYHRMFTLDVEENENGERTPYLIVMGLL
DRETQDQYVSIIIAEDGGSPPLLGSATLTIGISDINDNCPLFTESQINVTVYGNATVGTP
IAAVEAVDIDLGINAQITYSYSQKVPQASKDLFHLDENTGVIKLFNKIGENVLQTHKLTI
LANGPGCIPAVITALVTIIKVIFRPPEIVPRYIANEVDGVVYLKELEPVNTPIAFFTIRD
PEDKYKVNCYLDGDGPFKLSPYKPYSNEYLLETTKPLDYELQQLYDVSVVAWNSEGFHVK
KILKVQLLDDNDNAPIFPQPLIELTIEENNTPNAFLTKLYATDADSGERGQVSYFLGPDA
PSYFSLDNVTGILTVSTQLDREEKEKYRYTVRAVDSGKPPRESVATVTLTVLDKNDNSPR
FINKDFSFFVPENFPGYGEIGVISVTDADAGRNGWVALSVVNQSDIFVIDTGKGMLRAKV
SLDREQQSSYTLWVEAVDGGEPALSSSVKITILLLDINDNPPLVLFPQSNMSYLLVLPST
LPGSPVTEVYAVDKDTGMNAVIAYSIIGRRGPRPESFRIDPKTGNITLEEALLQTDYGLH
RLLVKVSDHGYPEPLHSTVMVNLFVNDTVSNESYIESLLRKEPDINIEEKEPQISIEPTH
RKAESISCMPTLVALSIISLGSITLITAMGIYICLRRGKKYHREVENLEVQIPLKGKIDL
HMRERKPMDISNI
NT seq
4002 nt
NT seq
+upstream
nt +downstream
nt
atgcatcggagaactgcaattcttggcaggttttggttcctgttagtaaccaatgcagct
tccctggcagaaagtacctgcaacttctccacagtctctgcttcagctgttagctctgcc
tggctcctaccatcagcctctggcaccccttatcaaccacttgtgggtagtgcctaccct
taccaacaaattaacacaggaatgctgtctggagtgtcagtccagaaccagactttcact
tcaactgcttcctaccacccactattattcagtgggatattactggaagtgctcaaaata
cgtcctctacccgtggaggcttcactatggactgtcactgaccaaaacacagctgtctct
tccatgtcagtagcagctcagtaccctaacatctcacataccaccagcacagtgcctctg
tacacatacccaacttttcaggcagacttgtcaagaggacaccacctcaggggtccacat
cacactcagaggcctgggagtccagcccccaaatgccttatccctcggcctccacctctt
gacttctacaactctgtgtctgcctcagcccatcacagaatcaagatttcaagccctgat
ttacaccaaatcctgacctcctttgatcctctggaccaagaaaagcaggttgcttctgaa
aacaagggcctgggaaagagtcaaaagttctatgaagatgatgtagcactggaaagtgac
acagactctagtagcagtctggcagatatcaccaccttggaagaaataaattgtcccctc
actcttagagtccttgccaagaccgtggaccaaaacaactctctccaagaaattgacacc
aaacaaaatatcacaattgccaccacctgcaaggtcaaattaatacctttgccatttttc
gcctcggagaagccaccacctgtttctcggcggcggccaagaccacaacatctggctgct
agtgttcctgctgcatctcagcctaccaggcctggttcttctcagtgcccactcaaccaa
tgctgtgaggatgagaagacgacagaaaaggacagaagctacattactagttcagaagag
gaatttgtatcctttagcataggtagaaggaaacagaatcttccccgggagtgcttgctt
ggcccagggaatgcgcacagctcgcgggccctggcattgagctggcgtccggcgacttgg
cacccgggcctggatatggggcgtctaaatcgtcccaggagcagcagcagcaccagcccc
agaaacctcccgcatctgtttctcttcttcctcttcgtgggacccttcaactgcctcgcg
agttacagtcgggccacggagctcctgtacagcctgaacgagggactccctgccggagtg
ctcattggcagtctggcccaggaccttcgtctggtgccccctgctcccaccgggagaaac
aagccgcagtggcagccacctgagcgcttgggtgctgagctgaatccccctctgtccttc
agcctggcctcccggggactgagtggccagtatgttaccctggacaaccgctccggggag
ctgcacacgtcaacacaggagattgatcgtgaggccctgtgtctggaagggggtgcaggg
gctgcctggggcgccagcatctccatttcctcctccccttcccaggaccagtgtcttttg
cttctggatgtcctggtcctgcctcaggaatacttcaggtttgtgaaggtgaaaattgca
atccgggacatcaatgacaatgctccacagttccctgtgtctcagatctccgtgtgggtc
ccagaaaatgcacctataaatactcgtctcgccatagagcatcctgccaccgacccagat
gtaggaacgaatggggttcagacctaccgcctcctggattaccatcgcatgttcaccctg
gatgtggaagagaatgaaaatggggagcgcaccccctacctgattgtcatgggcctgttg
gatagggagactcaggaccagtatgtgagcatcatcatagccgaggatggtggatctcca
cctctactgggtagtgccacactcactattggcataagtgacattaatgacaattgccct
ctttttactgagtcacaaatcaatgtcacggtgtatgggaatgctacagtgggcacaccg
atcgcggctgtcgaggctgtggatatagacttgggaatcaatgctcagatcacctattct
tacagccaaaaagttccacaggcttccaaggatttatttcacctggatgaaaacactgga
gtcattaaactttttaataagattggagaaaatgttctacagacacataagctcactatc
cttgctaatgggcctggctgcatccctgccgtgattactgccctagtgaccatcatcaaa
gtaattttcagaccacctgaaattgttcctcgttatatagcaaatgaggtagacggtgtt
gtttacctaaaggaactggaacctgtgaacaccccaattgccttcttcaccattcgagat
ccagaagacaaatacaaggtgaactgctacctggatggcgatgggccatttaagttatca
ccctacaaaccatacagcaatgaatatttgctggaaaccacaaaacctttggactacgaa
ctacagcagctatatgacgtatctgtggtggcctggaattctgagggatttcatgtcaaa
aaaattcttaaagtgcaactcttagatgacaatgataatgctcctattttccctcaaccc
ttgatagaactcacaatcgaagaaaacaacacacccaatgcctttttgactaaactctat
gctacagatgcagatagtggagagagaggacaagtttcttattttctgggacctgatgct
ccatcttatttttctttagacaatgtcacaggaattctcactgtttctactcagctggac
agagaagagaaagaaaaatatagatacacagttagagctgtggactctgggaagccacca
agggagtctgtagccactgtgactctcacggtattggataaaaatgacaatagcccacgg
tttatcaacaaggatttcagcttttttgtgccagagaacttcccaggatatggtgaaatc
ggtgtaattagtgtcacagatgctgatgctgggcggaatggatgggtggccctctcagtg
gtaaaccagagtgatatttttgtcatagacacgggaaagggcatgttaagagccaaagtg
tctttggacagagagcagcaaagttcctatactttatgggttgaagctgtggatgggggt
gagcctgcactctcctcctctgtaaaaattaccattctccttcttgatatcaatgacaat
cctcctctggttttatttcctcagtctaacatgtcttatctgttggtactaccttctact
ctccctggctccccagttacagaggtctatgcagttgataaggacacaggcatgaatgct
gttatagcttacagcatcataggaagaagaggcccaagacctgagtcttttagaatcgat
cctaaaactggcaacataactctggaagaggcattgctacagacagattacgggttgcat
cgtttgctggtgaaagtgagtgatcatggttatcctgaacctctacactctacggtcatg
gtcaatttatttgtcaatgatactgtcagtaatgagagttacattgagagtcttttaaga
aaggagccagacattaatatagaggagaaagaaccacagatctcaatagaaccaactcac
aggaaggccgaatctatttcctgcatgcctaccttagtagcactgtctataataagcctg
ggttctatcacactgatcacagcaatgggcatctacatctgtttaaggagagggaaaaaa
tatcacagggaagttgaaaatttggaagtacaaattccactgaaaggaaaaattgattta
catatgagagagaggaaaccaatggatatttctaacatttga
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