Suncus etruscus (white-toothed pygmy shrew): 126016341
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Entry
126016341 CDS
T09902
Symbol
CNTNAP1
Name
(RefSeq) contactin-associated protein 1 isoform X1
KO
K07379
contactin associated protein 1
Organism
setr
Suncus etruscus (white-toothed pygmy shrew)
Pathway
setr04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
setr00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
126016341 (CNTNAP1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
setr04990
]
126016341 (CNTNAP1)
Domain-containing proteins not elsewhere classified [BR:
setr04990
]
Laminin domain-containing proteins
Laminin G domain-containing proteins
126016341 (CNTNAP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Laminin_G_2
Laminin_G_1
F5_F8_type_C
EGF
F5_F8_type_C_2
Motif
Other DBs
NCBI-GeneID:
126016341
NCBI-ProteinID:
XP_049634877
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All DBs
Position
1:189941932..189961748
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AA seq
1392 aa
AA seq
DB search
MMLLRLFCILLVWVSGARGWGYYGCDEELVGPLYYRSLGASSYYGFFTAPRFARLHGISG
WSPRIGDPNPWLQIDLMKKHRIRAVATQGSFNSWDWVTRYMLLYGDRVDSWTPFYQQGHN
STFFGNMNESAVVRHDLHYHFTARYIRIVPLAWNPRGKIGLRLGLYGCPYKSDVLYFDGD
DAISYRFPRGYSRSLWDVVAFSFKTEEKDGLLLHSEGAQGDYVTLELQDAHLLLHMSLGS
SPIQPRPGHTTVSAGGVLNDLHWHYVRVDRFGRDANFTLDGYVQRFILNGDFERLNLDNE
MFIGGLVGAARKNLAYRHNFRGCIENVIFNRVNIADLAVRRHSRIAFEGKVAFRCLDPVP
HPVNFGGPHNFLYVPGFPRRGRLAVSFRFRTWDLTGLLVFSSLGEGLGHVELMLSEGQVN
VSIAQAGRKKLQFAAGFRLNDGFWHEVNFAAQDNHAVISIDDIEGSEVRVSYPLLIRTGT
SYFFGGCPKPASRWGCHSNQTAFHGCMELFKVDGQLVNLTLVEFRKLGSFAEILFDTCGI
TDRCNPNMCEHDGRCYQSWDDFICYCELTGYKGETCHHPLYKESCEAYRLSGKYSGNYTI
DPDGSGPLKPFMVYCDIRENRAWTVVRHDRLWTTRVTGSSMERPFLGAVQYWNASWEEVG
ALANASQHCEQWIEFSCYNSRLLNTAGGYPYSFWMGRNEEQHFYWGGSQPGIQRCACGLD
RSCVDPALHCNCDADQPQWRTDKGLLTFVDHLPVTQVVIGDTNRSSSEAQFFLRPLRCYG
DRNSWNTISFHTGAALRFPPIRANHSLDVSFYFRTSAPSGVFLENMGGRFWEFRRPYLRV
ELNTSRDVVFAFNVGNGDENLTLHSDDLEFNDDEWHLVRAEINVKQVRLRVDHRPWVLRL
MPLQTYIWLEYDQPLYVGSAELKRRPFVGCLRAMRLNGVTLNLEGRANASEGTFPNCTGP
CAHPRFPCFHGGRCVERYSYYTCDCDLTAFDGPYCNHDIGGFFEPGTWMRYNLQSALRSA
AREFSHMLSRPVPGYEPGYVPGYDTPGYVPGYHGPGYRLPDYPRPGRPVPGYRGPVYNVT
GEEVSFSFSTSSAPAVLLYVSSFVRDYMAVLIKEDGTLQLRYQLGTSPYVYQLTTRPVTD
GQPHSVNITRVYRQLFIQVDYFPLTQQKFSLLVDSQLDSPKALYLGRVMETGIIDPEIQR
YNTPGFSGCLSGVRFNNVAPLKTHFRTPRPMTAELAEALRVQGDLSESNCGAMPRLFSEV
PPELDPWYLPPDFPYYHDDGWVAILLGFLVAFLLLGLVGMLVLFYLQNHRYKGSYHTNEP
KAAHDYPPGGKPPPATSGPAQAPAPTPAPSQVPTPAPTPAPTPAPAPAPTPTPAPGPREQ
NLPQILEESRSE
NT seq
4179 nt
NT seq
+upstream
nt +downstream
nt
atgatgcttctccggctcttctgcatcctgctggtctgggtgtcgggagcccggggctgg
ggctattatggctgcgacgaagagctggtggggcccctctactaccgctccctgggcgcc
tcctcctattacgggttcttcactgcaccccgctttgcccggctgcacggcatcagtggc
tggtctcccaggattggggacccaaacccctggctccaaatcgacttaatgaagaagcac
cgcatccgtgccgtggccacacagggctcctttaactcctgggactgggtcacccgttac
atgctgctctatggcgaccgggtggacagctggacacctttctaccagcaagggcacaac
tcgaccttctttgggaatatgaacgagtctgccgtggtgcgccatgacctacactatcac
ttcaccgcacgatacatccgcatcgtccccctggcctggaacccgcgtggcaagatcggt
ctccggctgggcctctacggctgcccctacaagtccgacgtgctctacttcgacggcgac
gatgccatctcctaccgcttcccgcgcgggtacagccggagcctgtgggacgtggtcgcc
ttcagcttcaaaaccgaggagaaagacggacttctgctgcactccgagggcgcccagggc
gactacgtaacccttgagctccaggacgcacacttgctgctgcacatgagcctgggcagt
agccccatccagccacggccgggccacaccacagtgagcgctgggggcgtcctcaatgac
ctacactggcattatgtccgggtggaccgctttgggcgagacgcgaatttcaccttggat
ggctacgtgcagcgcttcatactcaacggcgactttgagaggctgaacctggacaatgag
atgttcatcgggggtttagtgggcgccgcccgaaagaacttggcctatcggcacaacttc
cgtggctgcatagaaaatgtcatcttcaaccgggtgaacatcgctgacctggctgtcagg
cgccactcacggatagcattcgagggtaaggtggcattccgttgcctggaccccgtccct
caccccgtcaacttcggagggccccacaactttctatatgtgcctggcttcccacgccgg
ggccgcctggctgtgtcctttcgcttccgcacttgggacctcacggggctgctcgtcttc
tccagcctgggtgaggggctgggacatgtggagctgatgctcagcgaaggtcaggtcaac
gtgtccatcgcccaggctggccgcaagaagctgcagttcgctgctgggttccgcctgaat
gatggcttctggcatgaagtgaactttgctgcccaggataaccatgcagtcatcagcatt
gacgacatcgaggggtcagaggtcagggtctcatacccactgctgatccgaactgggacc
tcatacttctttgggggttgtcccaagccagccagtcgatggggctgccactccaaccag
acagcattccacggctgtatggagctgttcaaggtggatggtcaactggtcaacctgacg
ctggtggagtttcggaaactcggatcctttgctgagatcctctttgacacatgcggcatc
actgacaggtgcaaccctaacatgtgtgagcacgatgggcgctgctaccagtcttgggat
gattttatctgctactgtgagctcacaggctacaagggggaaacctgccaccatccattg
tataaggagtcttgcgaagcgtatcgcctcagtggaaaatattctggaaactacaccatt
gatcctgatggcagtggccccctaaagccatttatggtctactgtgacatccgagagaac
cgggcctggacagtggtgcggcatgacaggctgtggaccacgcgcgtaacgggctctagc
atggagcggcccttcctgggggctgtccagtactggaacgcttcctgggaagaagttggt
gctctggccaatgcttcccagcactgtgagcagtggatcgaattctcctgctacaattcc
cggctgctcaacactgcaggaggttacccctacagcttctggatgggccgaaacgaggag
cagcacttctactggggaggctcacagccgggcattcagcgctgtgcctgtgggctggat
cgcagctgcgtggaccctgccctacactgtaactgtgacgcggaccagccgcagtggaga
acagacaagggcctgctgacctttgtggaccatttgcctgtcacccaagtggtgattggg
gacaccaaccgttccagctccgaagcccagttcttcctgagacctctgcgctgctacggt
gaccgcaattcctggaacaccatctccttccacactggggctgcgctccgctttcccccg
atccgggccaaccacagcctcgatgtctccttctacttcaggacctcagctccctctgga
gtcttcctggagaacatggggggccgattctgggagtttcggcggccttacttacgggtg
gaactcaacacctcccgggatgtggtctttgcctttaatgtgggcaacggagatgagaac
cttacactgcactcagatgatcttgaattcaatgacgacgagtggcacctggtgcgggca
gagatcaatgtcaagcaggtccggcttcgtgtggaccatcggccctgggtgctgcggctt
atgcccctgcagacctacatctggctggagtacgaccagcccctctacgtcggatctgca
gagcttaagagacggccctttgtggggtgcttgagggccatgcgtctgaatggggtgact
ctgaacctggagggccgtgccaatgcctcagagggcaccttccccaactgcacgggccct
tgtgcccacccccgcttcccctgtttccatggaggccgctgcgtggagcgctacagctac
tacacttgtgactgtgacctcacggcatttgacgggccttactgtaaccatgacatcggc
gggttcttcgaaccgggtacctggatgcgctataacctgcagtcagctctgcgttctgcc
gcccgcgagttctcccacatgctgagccgccccgtgccaggctatgaaccgggatatgtc
cctggctacgacacccctggctatgtgccgggctaccacggccccggttaccgcctgcct
gactatccacggcctggccggccagtgccaggttaccgcggacctgtctacaatgtcaca
ggagaggaggtgtccttcagcttcagcaccagctcagcccctgctgtcttgctctatgtc
agctcctttgtacgtgactacatggctgtgctcatcaaggaggacgggactctgcagctg
cgctaccagctgggcaccagtccctacgtgtaccagctcaccacgcgaccagtgactgat
ggccagccacacagcgtcaacatcacaagggtctatcgccagctcttcatccaggtggac
tacttcccactgacccaacagaaattttctttgctggtggacagccagctggattcaccc
aaggctttgtatctcggacgtgtgatggagactggcatcattgacccagagatccagcgc
tacaacacaccaggcttttcgggctgcctgtccggggtgcgcttcaacaacgtggctccc
ctcaaaacccacttccgaaccccacgccccatgaccgctgagttggctgaggccctccgc
gtgcagggagacctgtcagaatccaactgtggtgccatgccacgtctgttctcagaggtg
ccgcctgaactggacccctggtatctgcccccagacttcccatattaccatgatgatgga
tgggtcgcgatacttttaggctttttggtggccttcttgctgctggggctggtgggaatg
ttggtgctcttctatctgcaaaatcatcgctacaagggctcttaccacaccaatgagccc
aaggccgcccacgattacccacctggtggcaaacctccccctgcgacttcaggcccagcc
caggcccctgctcctacaccagctccctcacaagttcctaccccagccccgaccccagcc
ccaactccagccccagccccagccccgaccccaaccccagccccaggtcctcgggaacaa
aaccttcctcagatcctggaggaatccaggtctgaatga
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